Rroxscaffold_3G00223850

Protein of unknown function (DUF563)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0004099
Physical Location & Seq
Forward (+)
6959696 .. 6962016
2321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00223850.1

Sequence Viewer

Length: 1428 bp
ATGCTTGGCCCTGAACAAATCATGGAAGTGAAAAGCAGTGCCAGACCACTCGACAAACCGAAGAGCTTGAGCCCCTCAATAACCCTCCTCCTCATAGGCCTCTTTTCGCTATCTCTCATTCTCATCCTATTTCATGGCTTTTCTTCACTCTCCATCTCTTCTGCTTCATGGGATTTCCAGAAATGGAGAAGTGAACTTGGTGCCAACAACAATGATGCTCGTGATGATCTTAACTCGAAGCTGCGAGACTCGGTTACTTTCCTTCCTCTCAAAGACCTGAGGTTCACTAAAACTGCAATGGAGGGCAACACTTGGTTTATGAGCTCTTTCAACGACACATACGAGGAAAATGAATCCCAATACCTCTATTTCCCTTCACAAGCGTCAAAGGGAAGACTTCTATGCATCAAAGGTCATGACCAAAAAGATGGCACCAAGAATTCATATGCCTTGGCGTGGCCTCAAAGTCTACCTAACTCCACCACAGTCTTGAAAGGCCTCACCTTTGTGTCTGACACATACTATGATTATGTAAACTTGTGGCATGGACTCTCTGCAATGGTCCCTTTTGTGGGTTGGTCCATGAAGAACAGGTGTTTGAAGCCCACGAGATGGGTGTTGTTCCATTGGGGAGAGCTGAGAGACAAAATGGGGTTGTGGCTTCAGAACCTAATGGAAGCAAACTTAGGGAAAGTGCTGATTGAAGAAATGGGAAAAGGAGAAGGGCCTTATTGTTTTGAGAAGGCTGTTGTGATGAGACATAATGTTGGGAAAATGGGCAAAGAGAAGAAGCGTCAAGTGTCTGACTTATTGAGATGTAAAGCAAGAGTGTTTTGTGGCATAAATCCTTCAGGCAGAGGGAAAGAGGTTGGTGTGAGTAGGGAGCCAATTATAAGGCTAACTTTGCTAATGAGGAGAGGTTCAAGATCATTCAAGGATCCAACGGCTGTGATTAGTATATTTGCAAGGGAGTGTGCATTGGTGGATGGGTGCTTGTTCGAGGTTGTTCAGTCTGAGGACCAAAGTTTCTGTGATCAGGTTAGGGTAATGACCAACACAGATATTCTTGCATCCCCACACGGAGCTCAGCTAACAAACATGCTATTCATGGATAGAAACAGTAGCATAATGGAATTCTTCCCTAAAGGATGGTTGGAGCTTGCCGGGGTCGGCCAGTATGCTCATCACTGGATGGCAGATCAATCCGGTATGAAGCACCGAGGTGCATGGTGGGATCCTAATGCTGAAGAGGAATGTCCTGACCCTAAACAACAACTAGAATGCTTTAACTTCTACAAAGATGGCAAGGTCGGTCACAACGAAACCTACTTTGCAGGGTGGGCTAGAACTGTTCTCAACCTAGTTCGGATAAGCAAGCAGCAAGCTATGCAGAGTTCACAGAGATATTCAAATGCTTGCCGATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF563

Protein Analysis

475

Amino Acids

54.06

Weight (kDa)

8.79

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 298 - 376 4e-13 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 893
AccB1I GGYRCC 2 cut(s) 200, 431
AccB7I CCANNNNNTGG 1 cut(s) 612
AccI GTMKAC 1 cut(s) 469
AclWI GGATC 4 cut(s) 932, 945, 1229, 1242
AcoI YGGCCR 1 cut(s) 1171
AcsI RAATTY 2 cut(s) 439, 1133
AcuI CTGAAG 3 cut(s) 647, 834, 1266
AfiI CCNNNNNNNGG 4 cut(s) 456, 571, 572, 612
AgsI TTSAA 7 cut(s) 331, 493, 601, 704, 924, 934, 1410
AleI CACNNNNGTG 2 cut(s) 506, 1221
AluBI AGCT 8 cut(s) 66, 241, 324, 637, 1085, 1090, 1159, 1385
AluI AGCT 8 cut(s) 66, 241, 324, 637, 1085, 1090, 1159, 1385
Alw21I GWGCWC 2 cut(s) 326, 1087
Alw26I GTCTC 3 cut(s) 240, 636, 751
AlwI GGATC 4 cut(s) 932, 945, 1229, 1242
AoxI GGCC 6 cut(s) 7, 97, 458, 496, 725, 1171
ApeKI GCWGC 2 cut(s) 241, 1378
ApoI RAATTY 2 cut(s) 439, 1133
AspS9I GGNCC 5 cut(s) 8, 562, 579, 725, 1018
AsuC2I CCSGG 1 cut(s) 1165
AsuHPI GGTGA 1 cut(s) 493
AvaII GGWCC 3 cut(s) 562, 579, 1018
AxyI CCTNAGG 1 cut(s) 278
BamHI GGATCC 2 cut(s) 937, 1234
BanI GGYRCC 2 cut(s) 200, 431
BanII GRGCYC 3 cut(s) 74, 326, 1087
BauI CACGAG 2 cut(s) 219, 607
BbsI GAAGAC 1 cut(s) 400
Bbv12I GWGCWC 2 cut(s) 326, 1087
BbvI GCAGC 2 cut(s) 228, 1390
BccI CCATC 7 cut(s) 161, 422, 606, 980, 1143, 1186, 1295
BceAI ACGGC 1 cut(s) 960
BclI TGATCA 1 cut(s) 1033
BcnI CCSGG 1 cut(s) 1165
BcoDI GTCTC 3 cut(s) 240, 636, 751
BfaI CTAG 4 cut(s) 1277, 1344, 1361, 1426
BisI GCNGC 2 cut(s) 242, 1379
BlpI GCTNAGC 1 cut(s) 1086
BlsI GCNGC 2 cut(s) 243, 1380
Bme1390I CCNGG 1 cut(s) 1165
Bme18I GGWCC 3 cut(s) 562, 579, 1018
BmgT120I GGNCC 5 cut(s) 8, 562, 579, 725, 1018
BmiI GGNNCC 6 cut(s) 202, 433, 564, 885, 939, 1236
BmrFI CCNGG 1 cut(s) 1165
BmsI GCATC 4 cut(s) 205, 414, 1079, 1412
BpiI GAAGAC 1 cut(s) 400
Bpu1102I GCTNAGC 1 cut(s) 1086
BpuEI CTTGAG 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 1165
BsaJI CCNNGG 3 cut(s) 450, 1164, 1219
BsaWI WCCGGW 1 cut(s) 1205
Bsc4I CCNNNNNNNGG 4 cut(s) 456, 571, 572, 612
Bse1I ACTGG 2 cut(s) 1174, 1193
Bse21I CCTNAGG 1 cut(s) 278
Bse3DI GCAATG 2 cut(s) 303, 564
BseDI CCNNGG 3 cut(s) 450, 1164, 1219
BseGI GGATG 5 cut(s) 123, 991, 1070, 1154, 1197
BseLI CCNNNNNNNGG 4 cut(s) 456, 571, 572, 612
BseMI GCAATG 2 cut(s) 303, 564
BseMII CTCAG 4 cut(s) 269, 629, 1005, 1100
BseNI ACTGG 2 cut(s) 1174, 1193
BseRI GAGGAG 3 cut(s) 77, 80, 928
BseXI GCAGC 2 cut(s) 228, 1390
BshFI GGCC 6 cut(s) 9, 99, 460, 498, 727, 1173
BshNI GGYRCC 2 cut(s) 200, 431
BsiHKAI GWGCWC 2 cut(s) 326, 1087
BsiSI CCGG 2 cut(s) 1164, 1206
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 4 cut(s) 456, 571, 572, 612
BsmAI GTCTC 3 cut(s) 240, 636, 751
BsmFI GGGAC 1 cut(s) 548
BsmI GAATGC 1 cut(s) 1286
BsnI GGCC 6 cut(s) 9, 99, 460, 498, 727, 1173
Bsp1286I GDGCHC 3 cut(s) 74, 326, 1087
Bsp143I GATC 6 cut(s) 226, 926, 937, 1033, 1198, 1234
Bsp1720I GCTNAGC 1 cut(s) 1086
BspANI GGCC 6 cut(s) 9, 99, 460, 498, 727, 1173
BspCNI CTCAG 4 cut(s) 270, 630, 1006, 1099
BspHI TCATGA 1 cut(s) 415
BspLI GGNNCC 6 cut(s) 202, 433, 564, 885, 939, 1236
BspPI GGATC 4 cut(s) 932, 945, 1229, 1242
BspQI GCTCTTC 1 cut(s) 56
BspT107I GGYRCC 2 cut(s) 200, 431
BsrDI GCAATG 2 cut(s) 303, 564
BsrI ACTGG 2 cut(s) 1174, 1193
BssECI CCNNGG 3 cut(s) 450, 1164, 1219
BssMI GATC 6 cut(s) 226, 926, 937, 1033, 1198, 1234
BssSI CACGAG 2 cut(s) 219, 607
BssT1I CCWWGG 1 cut(s) 450
Bst2BI CACGAG 2 cut(s) 219, 607
Bst4CI ACNGT 3 cut(s) 487, 1121, 1351
Bst6I CTCTTC 3 cut(s) 56, 163, 1242
BstAPI GCANNNNNTGC 1 cut(s) 1387
BstC8I GCNNGC 4 cut(s) 1161, 1376, 1383, 1417
BstDEI CTNAG 5 cut(s) 278, 638, 685, 1014, 1086
BstF5I GGATG 5 cut(s) 123, 991, 1070, 1154, 1197
BstKTI GATC 6 cut(s) 229, 929, 940, 1036, 1201, 1237
BstMAI GTCTC 3 cut(s) 240, 636, 751
BstMBI GATC 6 cut(s) 226, 926, 937, 1033, 1198, 1234
BstMWI GCNNNNNNNGC 3 cut(s) 904, 1340, 1387
BstNSI RCATGY 1 cut(s) 1102
BstSCI CCNGG 1 cut(s) 1163
BstV1I GCAGC 2 cut(s) 228, 1390
BstV2I GAAGAC 1 cut(s) 400
BstX2I RGATCY 2 cut(s) 937, 1234
BstXI CCANNNNNNTGG 1 cut(s) 428
BstYI RGATCY 2 cut(s) 937, 1234
Bsu36I CCTNAGG 1 cut(s) 278
BsuRI GGCC 6 cut(s) 9, 99, 460, 498, 727, 1173
BtsCI GGATG 5 cut(s) 123, 991, 1070, 1154, 1197
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 2 cut(s) 43, 1186
Cac8I GCNNGC 4 cut(s) 1161, 1376, 1383, 1417
CciI TCATGA 1 cut(s) 415
Cfr13I GGNCC 5 cut(s) 8, 562, 579, 725, 1018
CseI GACGC 2 cut(s) 372, 782
CviAII CATG 9 cut(s) 22, 134, 168, 416, 545, 583, 1099, 1108, 1227
DdeI CTNAG 5 cut(s) 278, 638, 685, 1014, 1086
DpnI GATC 6 cut(s) 228, 928, 939, 1035, 1200, 1236
DpnII GATC 6 cut(s) 226, 926, 937, 1033, 1198, 1234
EaeI YGGCCR 1 cut(s) 1171
Eam1104I CTCTTC 3 cut(s) 56, 163, 1242
EarI CTCTTC 3 cut(s) 56, 163, 1242
Ecl136II GAGCTC 2 cut(s) 324, 1085
Eco130I CCWWGG 1 cut(s) 450
Eco147I AGGCCT 2 cut(s) 99, 498
Eco24I GRGCYC 3 cut(s) 74, 326, 1087
Eco47I GGWCC 3 cut(s) 562, 579, 1018
Eco53kI GAGCTC 2 cut(s) 324, 1085
Eco57I CTGAAG 3 cut(s) 647, 834, 1266
Eco81I CCTNAGG 1 cut(s) 278
EcoICRI GAGCTC 2 cut(s) 324, 1085
EcoO109I RGGNCCY 1 cut(s) 725
EcoRI GAATTC 2 cut(s) 439, 1133
EcoT14I CCWWGG 1 cut(s) 450
EcoT22I ATGCAT 1 cut(s) 407
EcoT38I GRGCYC 3 cut(s) 74, 326, 1087
ErhI CCWWGG 1 cut(s) 450
FaeI CATG 9 cut(s) 25, 137, 171, 419, 548, 586, 1102, 1111, 1230
FalI AAGNNNNNCTT 2 cut(s) 886, 918
FaqI GGGAC 1 cut(s) 548
FatI CATG 9 cut(s) 21, 133, 167, 415, 544, 582, 1098, 1107, 1226
FauNDI CATATG 1 cut(s) 445
FbaI TGATCA 1 cut(s) 1033
FblI GTMKAC 1 cut(s) 469
Fnu4HI GCNGC 2 cut(s) 242, 1379
FokI GGATG 5 cut(s) 110, 998, 1057, 1161, 1204
FriOI GRGCYC 3 cut(s) 74, 326, 1087
Fsp4HI GCNGC 2 cut(s) 242, 1379
FspBI CTAG 4 cut(s) 1277, 1344, 1361, 1426
GluI GCNGC 2 cut(s) 242, 1379
HaeIII GGCC 6 cut(s) 9, 99, 460, 498, 727, 1173
HapII CCGG 2 cut(s) 1164, 1206
HgaI GACGC 2 cut(s) 372, 782
Hin1II CATG 9 cut(s) 25, 137, 171, 419, 548, 586, 1102, 1111, 1230
HinfI GANTC 3 cut(s) 248, 353, 549
HpaII CCGG 2 cut(s) 1164, 1206
HphI GGTGA 1 cut(s) 493
Hpy166II GTNNAC 5 cut(s) 194, 285, 470, 535, 1397
Hpy188I TCNGA 5 cut(s) 514, 666, 805, 1015, 1368
Hpy188III TCNNGA 6 cut(s) 178, 221, 416, 490, 924, 1259
Hpy8I GTNNAC 5 cut(s) 194, 285, 470, 535, 1397
HpyAV CCTTC 5 cut(s) 272, 384, 716, 736, 858
HpyCH4III ACNGT 3 cut(s) 487, 1121, 1351
HpyCH4V TGCA 9 cut(s) 296, 405, 557, 965, 977, 1070, 1226, 1334, 1390
HpyF10VI GCNNNNNNNGC 3 cut(s) 904, 1340, 1387
HpyF3I CTNAG 5 cut(s) 278, 638, 685, 1014, 1086
Hsp92II CATG 9 cut(s) 25, 137, 171, 419, 548, 586, 1102, 1111, 1230
Ksp22I TGATCA 1 cut(s) 1033
Kzo9I GATC 6 cut(s) 226, 926, 937, 1033, 1198, 1234
LguI GCTCTTC 1 cut(s) 56
LmnI GCTCC 3 cut(s) 883, 1082, 1156
Lsp1109I GCAGC 2 cut(s) 228, 1390
LweI GCATC 4 cut(s) 205, 414, 1079, 1412
MaeI CTAG 4 cut(s) 1277, 1344, 1361, 1426
MaeIII GTNAC 2 cut(s) 253, 1313
MalI GATC 6 cut(s) 228, 928, 939, 1035, 1200, 1236
MboI GATC 6 cut(s) 226, 926, 937, 1033, 1198, 1234
MboII GAAGA 9 cut(s) 73, 135, 150, 405, 598, 716, 799, 1129, 1259
MflI RGATCY 2 cut(s) 937, 1234
MhlI GDGCHC 3 cut(s) 74, 326, 1087
MluCI AATT 3 cut(s) 439, 888, 1133
MlyI GAGTC 2 cut(s) 242, 543
MmeI TCCRAC 2 cut(s) 965, 1134
Mph1103I ATGCAT 1 cut(s) 407
MseI TTAA 2 cut(s) 231, 1287
MslI CAYNNNNRTG 3 cut(s) 26, 506, 1221
MspI CCGG 2 cut(s) 1164, 1206
MspR9I CCNGG 1 cut(s) 1165
Mva1269I GAATGC 1 cut(s) 1286
MwoI GCNNNNNNNGC 3 cut(s) 904, 1340, 1387
NciI CCSGG 1 cut(s) 1165
NdeI CATATG 1 cut(s) 445
NdeII GATC 6 cut(s) 226, 926, 937, 1033, 1198, 1234
NlaIII CATG 9 cut(s) 25, 137, 171, 419, 548, 586, 1102, 1111, 1230
NlaIV GGNNCC 6 cut(s) 202, 433, 564, 885, 939, 1236
NmuCI GTSAC 1 cut(s) 1313
NsiI ATGCAT 1 cut(s) 407
NspI RCATGY 1 cut(s) 1102
OliI CACNNNNGTG 2 cut(s) 506, 1221
PagI TCATGA 1 cut(s) 415
PceI AGGCCT 2 cut(s) 99, 498
PciSI GCTCTTC 1 cut(s) 56
PcsI WCGNNNNNNNCGW 2 cut(s) 339, 1317
PctI GAATGC 1 cut(s) 1286
PfeI GAWTC 1 cut(s) 353
PflMI CCANNNNNTGG 1 cut(s) 612
PkrI GCNGC 2 cut(s) 243, 1380
PleI GAGTC 2 cut(s) 242, 543
PpsI GAGTC 2 cut(s) 242, 543
PsiI TTATAA 1 cut(s) 893
Psp124BI GAGCTC 2 cut(s) 326, 1087
PspN4I GGNNCC 6 cut(s) 202, 433, 564, 885, 939, 1236
PspPI GGNCC 5 cut(s) 8, 562, 579, 725, 1018
PsuI RGATCY 2 cut(s) 937, 1234
RseI CAYNNNNRTG 3 cut(s) 26, 506, 1221
SacI GAGCTC 2 cut(s) 326, 1087
SapI GCTCTTC 1 cut(s) 56
SaqAI TTAA 2 cut(s) 231, 1287
SatI GCNGC 2 cut(s) 242, 1379
Sau3AI GATC 6 cut(s) 226, 926, 937, 1033, 1198, 1234
Sau96I GGNCC 5 cut(s) 8, 562, 579, 725, 1018
SchI GAGTC 2 cut(s) 242, 543
ScrFI CCNGG 1 cut(s) 1165
SduI GDGCHC 3 cut(s) 74, 326, 1087
SfaNI GCATC 4 cut(s) 205, 414, 1079, 1412
SinI GGWCC 3 cut(s) 562, 579, 1018
SmiMI CAYNNNNRTG 3 cut(s) 26, 506, 1221
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 3 cut(s) 439, 888, 1133
SseBI AGGCCT 2 cut(s) 99, 498
SspMI CTAG 4 cut(s) 1277, 1344, 1361, 1426
SstI GAGCTC 2 cut(s) 326, 1087
StuI AGGCCT 2 cut(s) 99, 498
StyD4I CCNGG 1 cut(s) 1163
StyI CCWWGG 1 cut(s) 450
TaaI ACNGT 3 cut(s) 487, 1121, 1351
TaqI TCGA 3 cut(s) 51, 236, 999
TaqII GACCGA 1 cut(s) 1301
TasI AATT 3 cut(s) 439, 888, 1133
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 2 cut(s) 231, 1287
Tru9I TTAA 2 cut(s) 231, 1287
TscAI CASTG 2 cut(s) 43, 1193
TseFI GTSAC 1 cut(s) 1313
TseI GCWGC 2 cut(s) 241, 1378
Tsp45I GTSAC 1 cut(s) 1313
TspDTI ATGAA 7 cut(s) 122, 156, 366, 432, 599, 1096, 1226
TspGWI ACGGA 1 cut(s) 1095
TspRI CASTG 2 cut(s) 43, 1193
Van91I CCANNNNNTGG 1 cut(s) 612
VpaK11BI GGWCC 3 cut(s) 562, 579, 1018
XapI RAATTY 2 cut(s) 439, 1133
XceI RCATGY 1 cut(s) 1102
XmiI GTMKAC 1 cut(s) 469
XspI CTAG 4 cut(s) 1277, 1344, 1361, 1426
Zsp2I ATGCAT 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.