Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029361.1

Orthogroup ID

OG0004099

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 652

Gene Structure 652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029361.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 284 bp

atgaggcacaacgaaggtgggatgtctagggatcagagaatggaggtttacgatctaatgcggtgtaaggccagggcttactgtaatgtgagttcggaaggggaagatcgtcggaggaagattggaatgacgttgttcatgaggacagggccgagatcattcaagaacgagggtgcggtggttggggtctttgagaaagagtgtgccaaggttgacggttgccgcttggtggtggctcactctaacaaccttactttctgtgaccaggtgcacattcccttaac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF563

Protein Analysis

95

Amino Acids

10.84

Weight (kDa)

8.97

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004099)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33590 AT4G33600
fragaria_vesca	FvH4_2g11820 FvH4_5g35970
malus_domestica	MD05G1047000.v1.1 MD08G1191500.v1.1 MD15G1380300.v1.1
prunus_persica	Prupe.1G526500_v2.0.a1 Prupe.8G066800_v2.0.a1
pyrus_communis	pycom15g34060
rosa_chinensis	RchiOBHm_Chr4g0390351 RchiOBHm_Chr7g0237711
rosa_laevigata	RLG00000000975 RLG00000009924
rosa_multiflora	Rmu_co8254707.1_g000001 Rmu_co8428079.1_g000001 Rmu_sc0029360.1_g000001 Rmu_sc0029361.1_g000001 Rmu_ssc0000067.1_g000045
rosa_roxburghii	Rroxscaffold_3G00223850 Rroxscaffold_5G00336450
rosa_rugosa	Rorug03G0330300 Rorug07G0306500
rosa_samantha	Rh4AG031800 Rh4BG026000 Rh4CG035000 Rh4DG027600 Rh7AG463300 Rh7BG433300 Rh7CG480200 Rh7DG449200
rosa_wichuraiana	Rw4G002530 Rw7G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	61, 176, 223
AclWI	GGATC	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	2 cut(s)	71, 264
Alw21I	GWGCWC	1 cut(s)	273
Alw44I	GTGCAC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	2 cut(s)	69, 149
ApaLI	GTGCAC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	149
BaeGI	GKGCMC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	273
BciT130I	CCWGG	2 cut(s)	73, 266
BfaI	CTAG	1 cut(s)	27
BisI	GCNGC	1 cut(s)	223
BlsI	GCNGC	1 cut(s)	224
Bme1390I	CCNGG	2 cut(s)	73, 266
BmgT120I	GGNCC	1 cut(s)	149
BmrFI	CCNGG	2 cut(s)	73, 266
BsaJI	CCNNGG	2 cut(s)	72, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
BseBI	CCWGG	2 cut(s)	73, 266
BseDI	CCNNGG	2 cut(s)	72, 207
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseSI	GKGCMC	1 cut(s)	273
BshFI	GGCC	2 cut(s)	71, 151
BsiHKAI	GWGCWC	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	229
BsnI	GGCC	2 cut(s)	71, 151
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	4 cut(s)	31, 52, 106, 155
BspACI	CCGC	3 cut(s)	61, 176, 223
BspANI	GGCC	2 cut(s)	71, 151
BspHI	TCATGA	1 cut(s)	138
BspPI	GGATC	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	72, 207
BssMI	GATC	4 cut(s)	31, 52, 106, 155
BssT1I	CCWWGG	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	73, 266
Bst4CI	ACNGT	2 cut(s)	83, 218
BstF5I	GGATG	1 cut(s)	27
BstKTI	GATC	4 cut(s)	34, 55, 109, 158
BstMBI	GATC	4 cut(s)	31, 52, 106, 155
BstNI	CCWGG	2 cut(s)	73, 266
BstSCI	CCNGG	2 cut(s)	71, 264
BstSLI	GKGCMC	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	71, 151
BtsCI	GGATG	1 cut(s)	27
CciI	TCATGA	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	149
CsiI	ACCWGGT	1 cut(s)	264
CspCI	CAANNNNNGTGG	1 cut(s)	33
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	4 cut(s)	71, 77, 151, 236
CviKI_1	RGCY	4 cut(s)	71, 77, 151, 236
DpnI	GATC	4 cut(s)	33, 54, 108, 157
DpnII	GATC	4 cut(s)	31, 52, 106, 155
Eco130I	CCWWGG	1 cut(s)	207
EcoRII	CCWGG	2 cut(s)	71, 264
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	1 cut(s)	142
FaiI	YATR	1 cut(s)	140
FatI	CATG	1 cut(s)	138
Fnu4HI	GCNGC	1 cut(s)	223
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	1 cut(s)	223
FspBI	CTAG	1 cut(s)	27
GluI	GCNGC	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	71, 151
Hin1II	CATG	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
Hpy166II	GTNNAC	3 cut(s)	49, 214, 271
Hpy188I	TCNGA	3 cut(s)	36, 97, 114
Hpy188III	TCNNGA	2 cut(s)	139, 163
Hpy8I	GTNNAC	3 cut(s)	49, 214, 271
Hpy99I	CGWCG	1 cut(s)	114
HpyAV	CCTTC	2 cut(s)	8, 92
HpyCH4III	ACNGT	2 cut(s)	83, 218
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	1 cut(s)	271
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	142
Kzo9I	GATC	4 cut(s)	31, 52, 106, 155
LpnPI	CCDG	5 cut(s)	58, 85, 132, 251, 278
MabI	ACCWGGT	1 cut(s)	264
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	4 cut(s)	33, 54, 108, 157
MboI	GATC	4 cut(s)	31, 52, 106, 155
MboII	GAAGA	2 cut(s)	116, 130
MhlI	GDGCHC	1 cut(s)	273
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	4 cut(s)	37, 108, 135, 163
MseI	TTAA	1 cut(s)	281
MspR9I	CCNGG	2 cut(s)	73, 266
MvaI	CCWGG	2 cut(s)	73, 266
NdeII	GATC	4 cut(s)	31, 52, 106, 155
NlaIII	CATG	1 cut(s)	142
NmeAIII	GCCGAG	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	260
PagI	TCATGA	1 cut(s)	138
PkrI	GCNGC	1 cut(s)	224
Psp6I	CCWGG	2 cut(s)	71, 264
PspGI	CCWGG	2 cut(s)	71, 264
PspPI	GGNCC	1 cut(s)	149
PsrI	GAACNNNNNNTAC	2 cut(s)	76, 108
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	1 cut(s)	223
Sau3AI	GATC	4 cut(s)	31, 52, 106, 155
Sau96I	GGNCC	1 cut(s)	149
ScrFI	CCNGG	2 cut(s)	73, 266
SduI	GDGCHC	1 cut(s)	273
SetI	ASST	6 cut(s)	19, 48, 134, 213, 252, 270
SexAI	ACCWGGT	1 cut(s)	264
SsiI	CCGC	3 cut(s)	61, 176, 223
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	71, 264
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	83, 218
TaiI	ACGT	1 cut(s)	134
TauI	GCSGC	1 cut(s)	225
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	1 cut(s)	127
VneI	GTGCAC	1 cut(s)	269
XspI	CTAG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.