AT4G35720

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007566
Physical Location & Seq
Forward (+)
16927730 .. 16929224
1495 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35720.1

Sequence Viewer

Length: 978 bp
ATGTATATGGCCTCACTGTCTCCGAGACTCCACAAAGCGTACAAAGCTAGATGTGTTAGCTTACCGGTTCGGTCTCATCCGAGTGTTAGGAGGATTCAAGAAGTGGTCTCCAAGGTTAGAGCTTTGGGGTCTTCTTCGTTAGACTCGAGGACAATAGTCCGTGACAGTCTCTCTGGTCTCACCGAGCTTTACAGATGTTTAAGTGAAGATCTCTTCAAGTCTTCTTCTGAAACTCAACAAGCCCTTCTTAATGGTGATGGTTTGATGGAAGAGCTTCTTGAAGTATCACTGAAATACTTAGAGGTTTGTGGAGGAGCTAAGGACGCAGCTTCGAGGATCAAGAAGATTGTTGTCGAGCTTCAGTCTGCTTTGAGAAGGAGCAAGAAAGGAGGTGAGTTTAGCCTCGAGAGTGACGTGGATGCTTATGTGGCGTCTAGGAAAGAGATCAAGCAGGAGATCAAGAAGTATATGGTAATGTCGAAAGAGACAGATGCGTCTTTGGAGAGTGTTTGGTGTGATGGCGATGATCAAGAGATGAGTGCTTTAGTTAGAGTGATGCAAGAGACGAGTGTAATGACTTGTTTCGTCTTACGCTCGGTCTTCTCGTTCTTGTCGTCGCCTAAAGGGTTAAAGACTAAGAATCATCATCACCACAAAGGTTGGGGGATTGTTATGAAGCTTGTGAAGAAAGGAATAGAACATCATCACCAGGAGAAAAGAGATTACGAGACGGGATTTTCTTGTCTCGTGCTTGAAGCTATGGAATCTGAGCTTGGGAAGCTCGTTGTGATGATGACAAGGGAAGATCAAGAAGAAGAGAAAAAGATTAGTGAAGAAGTATCTGAGAGGGTTCAATGTGCATTGGTTAGATCCGAAGGTGTAGAGGCAGCCATGGAAGAGCTTGAAGAGGGACTTGAAGGATTGTTCAAGGTAATGATACAAGCTAGAGTCTCTCTTCTTAACATCCTCTCCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

325

Amino Acids

36.57

Weight (kDa)

6.35

Isoelectric Point (pI)

57.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 57 - 322 4.9e-56 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 493
AclWI GGATC 2 cut(s) 344, 864
AcuI CTGAAG 1 cut(s) 344
AcyI GRCGYC 1 cut(s) 431
AfaI GTAC 1 cut(s) 41
AgeI ACCGGT 1 cut(s) 64
AgsI TTSAA 8 cut(s) 98, 217, 281, 755, 854, 905, 917, 928
AjiI CACGTC 1 cut(s) 415
AjnI CCWGG 1 cut(s) 708
AjuI GAANNNNNNNTTGG 2 cut(s) 756, 788
AlwI GGATC 2 cut(s) 344, 864
Ama87I CYCGRG 2 cut(s) 145, 404
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 2 cut(s) 326, 887
AsiGI ACCGGT 1 cut(s) 64
Asp700I GAANNNNTTC 1 cut(s) 273
AsuHPI GGTGA 5 cut(s) 172, 266, 404, 641, 698
AvaI CYCGRG 2 cut(s) 145, 404
BauI CACGAG 1 cut(s) 746
BbsI GAAGAC 3 cut(s) 123, 213, 592
BbvI GCAGC 2 cut(s) 338, 899
BccI CCATC 3 cut(s) 251, 259, 512
BciT130I CCWGG 1 cut(s) 710
BclI TGATCA 1 cut(s) 526
BfaI CTAG 3 cut(s) 48, 435, 945
BglII AGATCT 1 cut(s) 208
BisI GCNGC 2 cut(s) 327, 888
BlsI GCNGC 2 cut(s) 328, 889
Bme1390I CCNGG 1 cut(s) 710
BmeT110I CYCGRG 2 cut(s) 145, 404
BmgBI CACGTC 1 cut(s) 415
BmrFI CCNGG 1 cut(s) 710
BmsI GCATC 3 cut(s) 409, 481, 546
BoxI GACNNNNGTC 1 cut(s) 155
BpiI GAAGAC 3 cut(s) 123, 213, 592
Bpu10I CCTNAGC 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 431
BsaI GGTCTC 3 cut(s) 78, 112, 182
BsaJI CCNNGG 2 cut(s) 111, 891
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 1 cut(s) 953
Bse118I RCCGGY 1 cut(s) 64
BseBI CCWGG 1 cut(s) 710
BseDI CCNNGG 2 cut(s) 111, 891
BseGI GGATG 3 cut(s) 76, 424, 963
BseMII CTCAG 2 cut(s) 759, 834
BseRI GAGGAG 1 cut(s) 327
BseXI GCAGC 2 cut(s) 338, 899
BshFI GGCC 1 cut(s) 11
BshTI ACCGGT 1 cut(s) 64
BsiHKCI CYCGRG 2 cut(s) 145, 404
BsiSI CCGG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 924
BsmBI CGTCTC 2 cut(s) 557, 722
BsmFI GGGAC 1 cut(s) 924
BsnI GGCC 1 cut(s) 11
Bso31I GGTCTC 3 cut(s) 78, 112, 182
BsoBI CYCGRG 2 cut(s) 145, 404
Bsp143I GATC 7 cut(s) 208, 336, 444, 456, 526, 805, 869
Bsp19I CCATGG 1 cut(s) 891
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 2 cut(s) 760, 835
BspPI GGATC 2 cut(s) 344, 864
BspQI GCTCTTC 2 cut(s) 264, 891
BspTNI GGTCTC 3 cut(s) 78, 112, 182
BsrFI RCCGGY 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 111, 891
BssMI GATC 7 cut(s) 208, 336, 444, 456, 526, 805, 869
BssNI GRCGYC 1 cut(s) 431
BssSI CACGAG 1 cut(s) 746
BssT1I CCWWGG 2 cut(s) 111, 891
Bst2BI CACGAG 1 cut(s) 746
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 2 cut(s) 18, 167
Bst6I CTCTTC 6 cut(s) 218, 264, 810, 891, 900, 960
BstACI GRCGYC 1 cut(s) 431
BstDEI CTNAG 5 cut(s) 298, 318, 636, 768, 843
BstDSI CCRYGG 1 cut(s) 891
BstF5I GGATG 3 cut(s) 76, 424, 963
BstKTI GATC 7 cut(s) 211, 339, 447, 459, 529, 808, 872
BstMBI GATC 7 cut(s) 208, 336, 444, 456, 526, 805, 869
BstMWI GCNNNNNNNGC 4 cut(s) 44, 323, 428, 778
BstNI CCWGG 1 cut(s) 710
BstPAI GACNNNNGTC 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 708
BstV1I GCAGC 2 cut(s) 338, 899
BstV2I GAAGAC 3 cut(s) 123, 213, 592
BstX2I RGATCY 2 cut(s) 208, 869
BstYI RGATCY 2 cut(s) 208, 869
BsuRI GGCC 1 cut(s) 11
BtgI CCRYGG 1 cut(s) 891
BtgZI GCGATG 1 cut(s) 537
BtrI CACGTC 1 cut(s) 415
BtsCI GGATG 3 cut(s) 76, 424, 963
BtsIMutI CAGTG 2 cut(s) 14, 287
Cfr10I RCCGGY 1 cut(s) 64
CseI GACGC 3 cut(s) 332, 420, 483
Csp6I GTAC 1 cut(s) 40
CspAI ACCGGT 1 cut(s) 64
CspCI CAANNNNNGTGG 2 cut(s) 641, 676
CviAII CATG 1 cut(s) 892
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 5 cut(s) 298, 318, 636, 768, 843
DpnI GATC 7 cut(s) 210, 338, 446, 458, 528, 807, 871
DpnII GATC 7 cut(s) 208, 336, 444, 456, 526, 805, 869
DrdI GACNNNNNNGTC 1 cut(s) 493
DseDI GACNNNNNNGTC 1 cut(s) 493
Eam1104I CTCTTC 6 cut(s) 218, 264, 810, 891, 900, 960
EarI CTCTTC 6 cut(s) 218, 264, 810, 891, 900, 960
Eco130I CCWWGG 2 cut(s) 111, 891
Eco31I GGTCTC 3 cut(s) 78, 112, 182
Eco57I CTGAAG 1 cut(s) 344
Eco88I CYCGRG 2 cut(s) 145, 404
EcoRII CCWGG 1 cut(s) 708
EcoT14I CCWWGG 2 cut(s) 111, 891
ErhI CCWWGG 2 cut(s) 111, 891
Esp3I CGTCTC 2 cut(s) 557, 722
FaeI CATG 1 cut(s) 895
FaiI YATR 8 cut(s) 6, 8, 426, 468, 470, 674, 761, 893
FalI AAGNNNNNCTT 6 cut(s) 231, 263, 261, 293, 897, 929
FaqI GGGAC 1 cut(s) 924
FatI CATG 1 cut(s) 891
FbaI TGATCA 1 cut(s) 526
Fnu4HI GCNGC 2 cut(s) 327, 888
FokI GGATG 3 cut(s) 63, 431, 950
Fsp4HI GCNGC 2 cut(s) 327, 888
FspBI CTAG 3 cut(s) 48, 435, 945
GluI GCNGC 2 cut(s) 327, 888
HaeIII GGCC 1 cut(s) 11
HapII CCGG 1 cut(s) 65
HgaI GACGC 3 cut(s) 332, 420, 483
Hin1I GRCGYC 1 cut(s) 431
Hin1II CATG 1 cut(s) 895
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 6 cut(s) 27, 94, 143, 640, 764, 948
HpaII CCGG 1 cut(s) 65
HphI GGTGA 5 cut(s) 172, 266, 404, 641, 698
Hpy188I TCNGA 6 cut(s) 24, 81, 229, 769, 844, 874
Hpy188III TCNNGA 7 cut(s) 98, 278, 340, 406, 460, 530, 809
Hpy99I CGWCG 1 cut(s) 619
HpyAV CCTTC 4 cut(s) 254, 369, 869, 911
HpyCH4III ACNGT 2 cut(s) 18, 167
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 2 cut(s) 559, 860
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 323, 428, 778
HpyF3I CTNAG 5 cut(s) 298, 318, 636, 768, 843
HpySE526I ACGT 1 cut(s) 414
Hsp92I GRCGYC 1 cut(s) 431
Hsp92II CATG 1 cut(s) 895
Ksp22I TGATCA 1 cut(s) 526
Kzo9I GATC 7 cut(s) 208, 336, 444, 456, 526, 805, 869
LguI GCTCTTC 2 cut(s) 264, 891
LmnI GCTCC 2 cut(s) 314, 378
LpnPI CCDG 5 cut(s) 78, 159, 437, 695, 722
Lsp1109I GCAGC 2 cut(s) 338, 899
LweI GCATC 3 cut(s) 409, 481, 546
MaeI CTAG 3 cut(s) 48, 435, 945
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 2 cut(s) 161, 410
MalI GATC 7 cut(s) 210, 338, 446, 458, 528, 807, 871
MboI GATC 7 cut(s) 208, 336, 444, 456, 526, 805, 869
MflI RGATCY 2 cut(s) 208, 869
MlyI GAGTC 3 cut(s) 21, 137, 957
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 5 cut(s) 200, 249, 629, 960, 976
MslI CAYNNNNRTG 1 cut(s) 81
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 710
MvaI CCWGG 1 cut(s) 710
MwoI GCNNNNNNNGC 4 cut(s) 44, 323, 428, 778
NcoI CCATGG 1 cut(s) 891
NdeII GATC 7 cut(s) 208, 336, 444, 456, 526, 805, 869
NlaIII CATG 1 cut(s) 895
NmuCI GTSAC 2 cut(s) 161, 410
PaeR7I CTCGAG 2 cut(s) 145, 404
PciSI GCTCTTC 2 cut(s) 264, 891
PcsI WCGNNNNNNNCGW 4 cut(s) 143, 411, 602, 611
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 3 cut(s) 94, 640, 764
PinAI ACCGGT 1 cut(s) 64
PkrI GCNGC 2 cut(s) 328, 889
PleI GAGTC 3 cut(s) 21, 137, 956
PpsI GAGTC 3 cut(s) 21, 137, 956
PshAI GACNNNNGTC 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 708
PspGI CCWGG 1 cut(s) 708
PspXI VCTCGAGB 1 cut(s) 145
PsuI RGATCY 2 cut(s) 208, 869
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 81
SapI GCTCTTC 2 cut(s) 264, 891
SaqAI TTAA 5 cut(s) 200, 249, 629, 960, 976
SatI GCNGC 2 cut(s) 327, 888
Sau3AI GATC 7 cut(s) 208, 336, 444, 456, 526, 805, 869
SchI GAGTC 3 cut(s) 21, 137, 957
ScrFI CCNGG 1 cut(s) 710
SfaNI GCATC 3 cut(s) 409, 481, 546
Sfr274I CTCGAG 2 cut(s) 145, 404
SlaI CTCGAG 2 cut(s) 145, 404
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 2 cut(s) 145, 404
SmoI CTYRAG 2 cut(s) 145, 404
SspMI CTAG 3 cut(s) 48, 435, 945
StyD4I CCNGG 1 cut(s) 708
StyI CCWWGG 2 cut(s) 111, 891
TaaI ACNGT 2 cut(s) 18, 167
TaiI ACGT 1 cut(s) 417
TaqI TCGA 5 cut(s) 146, 332, 354, 405, 479
TaqII GACCGA 2 cut(s) 60, 586
TfiI GAWTC 3 cut(s) 94, 640, 764
Tru1I TTAA 5 cut(s) 200, 249, 629, 960, 976
Tru9I TTAA 5 cut(s) 200, 249, 629, 960, 976
TscAI CASTG 2 cut(s) 21, 294
TseFI GTSAC 2 cut(s) 161, 410
TseI GCWGC 2 cut(s) 326, 887
Tsp45I GTSAC 2 cut(s) 161, 410
TspDTI ATGAA 1 cut(s) 689
TspGWI ACGGA 1 cut(s) 149
TspRI CASTG 2 cut(s) 21, 294
XhoI CTCGAG 2 cut(s) 145, 404
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 3 cut(s) 48, 435, 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.