pycom15g20920

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0007566
Physical Location & Seq
Forward (+)
15014097 .. 15015041
945 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g20920.1

Sequence Viewer

Length: 945 bp
ATGATGAAAAGAGCAACAATGGCTTCATTCTCTGCCAAACCTTCAAAGCTTTACAATGTTCGATCGATTAGTATGCCGGTTAGGTCACATCCAAGCACACTCAGAACCGAGGAAGAGCTGAACAAGCTCAAGGCTTTGGAGGCAGCATTGACATCTTCATCGTCTTCGCCAAAGGCGGATTCAATATGCAAAGCACTAGGTGGGCTCAAAGAGTTATGTATTTGCATTGAGGAGCTTCTTCAATTGCCATTGACACAACAGGCTCTAGCCCTTCACCAGAAAGAGAAATGGGTTGAAGAGCTGTTGGAAGGTTCTGTCACGTACTTGGATGTTTGTGGCAACACAAGGGATTCCATTTTGGCGATGAAGGAAAGCGTTAGAGATCTTCAATCCACGCTTCGGAGAAGAAAGGTGGGAGATTTGAGCGTCGAAGACAATGTTAGTTCATATGTTCGCATACGAAAAAGGATGAAGAAGGAAATTGTGCAGTTTATGGCATCGTTGAAGCAAATGGATAAAAAATATGAAGCATTTCCTTTGGATCTAGACAACCATCTCGCCGCGGTGGTGAGAGTCCTGAGAGAGGCAAGTTTGATCACCAGTTCCATTTTTCACTTCCTGTCTTCATTCCTTTCCACACCAATTCTGAAGCCAAGGCCTAGCAGATGGTCACTGGTTTCGATTTTGTTGCACAAAGGGGTGTTGGTTTGTGACAACAACCAACACAAAAGCATGAACGAGCTGGAAAATGTAGATATTGCAATTAGCAACATGCTTGTCAATAATTCAGGTGAAGGTTTTGAGGATGATCAGAAGATTCAATCTGCACAAAGAAGGTTGGAGGTCTTGGATTCAAGCATTGAAGGCATTGAAAATGGTTTGGAGTGCTTGTTTAGGCTCTTGATCCGCACCAGAGTCTCTCTCCTAAACATGCTTTCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

315

Amino Acids

35.38

Weight (kDa)

8.77

Isoelectric Point (pI)

56.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 66 - 311 4.9e-85 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 563
AciI CCGC 4 cut(s) 176, 561, 563, 907
AclWI GGATC 2 cut(s) 549, 898
AcuI CTGAAG 1 cut(s) 668
AdeI CACNNNGTG 1 cut(s) 200
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 2 cut(s) 399, 583
AjuI GAANNNNNNNTTGG 2 cut(s) 163, 195
AluBI AGCT 6 cut(s) 49, 118, 127, 235, 301, 742
AluI AGCT 6 cut(s) 49, 118, 127, 235, 301, 742
Alw26I GTCTC 1 cut(s) 922
AlwI GGATC 2 cut(s) 549, 898
AoxI GGCC 1 cut(s) 656
ApeKI GCWGC 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 531
AsuHPI GGTGA 4 cut(s) 266, 580, 589, 803
BanII GRGCYC 1 cut(s) 207
BbsI GAAGAC 3 cut(s) 156, 438, 615
BbvI GCAGC 1 cut(s) 155
BccI CCATC 2 cut(s) 561, 660
BcgI CGANNNNNNTGC 4 cut(s) 55, 89, 670, 704
BclI TGATCA 2 cut(s) 594, 808
BcoDI GTCTC 1 cut(s) 922
BfaI CTAG 4 cut(s) 197, 266, 545, 660
BglII AGATCT 1 cut(s) 382
BisI GCNGC 2 cut(s) 144, 561
BlsI GCNGC 2 cut(s) 145, 562
BmsI GCATC 1 cut(s) 506
BpiI GAAGAC 3 cut(s) 156, 438, 615
BplI GAGNNNNNCTC 2 cut(s) 906, 938
BpuEI CTTGAG 1 cut(s) 113
Bsa29I ATCGAT 1 cut(s) 65
BsaAI YACGTR 1 cut(s) 321
BsaJI CCNNGG 3 cut(s) 108, 561, 653
BsaXI ACNNNNNCTCC 2 cut(s) 875, 905
Bsc4I CCNNNNNNNGG 2 cut(s) 399, 583
Bse118I RCCGGY 1 cut(s) 76
Bse1I ACTGG 2 cut(s) 600, 678
BseCI ATCGAT 1 cut(s) 65
BseDI CCNNGG 3 cut(s) 108, 561, 653
BseGI GGATG 4 cut(s) 88, 334, 474, 811
BseLI CCNNNNNNNGG 2 cut(s) 399, 583
BseMII CTCAG 2 cut(s) 115, 569
BseNI ACTGG 2 cut(s) 600, 678
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 155
BsgI GTGCAG 2 cut(s) 506, 810
Bsh1236I CGCG 1 cut(s) 563
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 1 cut(s) 658
BshVI ATCGAT 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 65
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 399, 583
BsmAI GTCTC 1 cut(s) 922
BsnI GGCC 1 cut(s) 658
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 6 cut(s) 62, 382, 541, 594, 808, 903
BspACI CCGC 4 cut(s) 176, 561, 563, 907
BspANI GGCC 1 cut(s) 658
BspCNI CTCAG 2 cut(s) 114, 570
BspDI ATCGAT 1 cut(s) 65
BspFNI CGCG 1 cut(s) 563
BspPI GGATC 2 cut(s) 549, 898
BspQI GCTCTTC 2 cut(s) 108, 291
BsrFI RCCGGY 1 cut(s) 76
BsrI ACTGG 2 cut(s) 600, 678
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 3 cut(s) 108, 561, 653
BssMI GATC 6 cut(s) 62, 382, 541, 594, 808, 903
BssT1I CCWWGG 1 cut(s) 653
Bst6I CTCTTC 2 cut(s) 108, 291
BstBAI YACGTR 1 cut(s) 321
BstDEI CTNAG 2 cut(s) 101, 578
BstDSI CCRYGG 1 cut(s) 561
BstENI CCTNNNNNAGG 1 cut(s) 581
BstF5I GGATG 4 cut(s) 88, 334, 474, 811
BstFNI CGCG 1 cut(s) 563
BstKTI GATC 6 cut(s) 65, 385, 544, 597, 811, 906
BstMAI GTCTC 1 cut(s) 922
BstMBI GATC 6 cut(s) 62, 382, 541, 594, 808, 903
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 4 cut(s) 20, 124, 140, 864
BstNSI RCATGY 2 cut(s) 775, 934
BstUI CGCG 1 cut(s) 563
BstV1I GCAGC 1 cut(s) 155
BstV2I GAAGAC 3 cut(s) 156, 438, 615
BstX2I RGATCY 2 cut(s) 382, 541
BstYI RGATCY 2 cut(s) 382, 541
Bsu15I ATCGAT 1 cut(s) 65
BsuRI GGCC 1 cut(s) 658
BsuTUI ATCGAT 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 561
BtgZI GCGATG 1 cut(s) 377
BtsCI GGATG 4 cut(s) 88, 334, 474, 811
BtsIMutI CAGTG 1 cut(s) 671
Cfr10I RCCGGY 1 cut(s) 76
Cfr42I CCGCGG 1 cut(s) 564
ClaI ATCGAT 1 cut(s) 65
CseI GACGC 1 cut(s) 415
Csp6I GTAC 1 cut(s) 322
CviAII CATG 3 cut(s) 733, 772, 931
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 2 cut(s) 101, 578
DpnI GATC 6 cut(s) 64, 384, 543, 596, 810, 905
DpnII GATC 6 cut(s) 62, 382, 541, 594, 808, 903
DraIII CACNNNGTG 1 cut(s) 200
Eam1104I CTCTTC 2 cut(s) 108, 291
EarI CTCTTC 2 cut(s) 108, 291
EciI GGCGGA 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 653
Eco147I AGGCCT 1 cut(s) 658
Eco24I GRGCYC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 668
EcoNI CCTNNNNNAGG 1 cut(s) 581
EcoT14I CCWWGG 1 cut(s) 653
EcoT38I GRGCYC 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 653
FaeI CATG 3 cut(s) 736, 775, 934
FatI CATG 3 cut(s) 732, 771, 930
FauNDI CATATG 1 cut(s) 448
FbaI TGATCA 2 cut(s) 594, 808
Fnu4HI GCNGC 2 cut(s) 144, 561
FokI GGATG 4 cut(s) 75, 341, 481, 818
FriOI GRGCYC 1 cut(s) 207
Fsp4HI GCNGC 2 cut(s) 144, 561
FspBI CTAG 4 cut(s) 197, 266, 545, 660
GluI GCNGC 2 cut(s) 144, 561
HaeIII GGCC 1 cut(s) 658
HapII CCGG 1 cut(s) 77
HgaI GACGC 1 cut(s) 415
Hin1II CATG 3 cut(s) 736, 775, 934
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 6 cut(s) 179, 350, 573, 817, 851, 915
HpaII CCGG 1 cut(s) 77
HphI GGTGA 4 cut(s) 266, 580, 589, 803
Hpy188I TCNGA 4 cut(s) 104, 402, 648, 813
Hpy188III TCNNGA 3 cut(s) 545, 577, 901
Hpy99I CGWCG 1 cut(s) 431
HpyAV CCTTC 8 cut(s) 51, 281, 302, 361, 469, 788, 828, 857
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 6 cut(s) 189, 225, 487, 691, 761, 827
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 124, 140, 864
HpyF3I CTNAG 2 cut(s) 101, 578
HpySE526I ACGT 1 cut(s) 320
Hsp92II CATG 3 cut(s) 736, 775, 934
Ksp22I TGATCA 2 cut(s) 594, 808
KspI CCGCGG 1 cut(s) 564
Kzo9I GATC 6 cut(s) 62, 382, 541, 594, 808, 903
LguI GCTCTTC 2 cut(s) 108, 291
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 1 cut(s) 506
MaeI CTAG 4 cut(s) 197, 266, 545, 660
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 4 cut(s) 84, 316, 669, 710
MalI GATC 6 cut(s) 64, 384, 543, 596, 810, 905
MboI GATC 6 cut(s) 62, 382, 541, 594, 808, 903
MfeI CAATTG 1 cut(s) 242
MflI RGATCY 2 cut(s) 382, 541
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 5 cut(s) 242, 480, 642, 762, 784
MlyI GAGTC 2 cut(s) 582, 924
MmeI TCCRAC 2 cut(s) 285, 819
MnlI CCTC 6 cut(s) 103, 133, 223, 577, 796, 835
MroXI GAANNNNTTC 1 cut(s) 531
MseI TTAA 1 cut(s) 943
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 1 cut(s) 77
MunI CAATTG 1 cut(s) 242
MvnI CGCG 1 cut(s) 563
MwoI GCNNNNNNNGC 4 cut(s) 20, 124, 140, 864
NdeI CATATG 1 cut(s) 448
NdeII GATC 6 cut(s) 62, 382, 541, 594, 808, 903
NlaIII CATG 3 cut(s) 736, 775, 934
NmuCI GTSAC 4 cut(s) 84, 316, 669, 710
NspI RCATGY 2 cut(s) 775, 934
PceI AGGCCT 1 cut(s) 658
PciSI GCTCTTC 2 cut(s) 108, 291
PdmI GAANNNNTTC 1 cut(s) 531
PfeI GAWTC 4 cut(s) 179, 350, 817, 851
PkrI GCNGC 2 cut(s) 145, 562
Ple19I CGATCG 1 cut(s) 65
PleI GAGTC 2 cut(s) 581, 923
PpsI GAGTC 2 cut(s) 581, 923
Ppu21I YACGTR 1 cut(s) 321
PsuI RGATCY 2 cut(s) 382, 541
PvuI CGATCG 1 cut(s) 65
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SacII CCGCGG 1 cut(s) 564
SapI GCTCTTC 2 cut(s) 108, 291
SaqAI TTAA 1 cut(s) 943
SatI GCNGC 2 cut(s) 144, 561
Sau3AI GATC 6 cut(s) 62, 382, 541, 594, 808, 903
SchI GAGTC 2 cut(s) 582, 924
SduI GDGCHC 1 cut(s) 207
SfaNI GCATC 1 cut(s) 506
Sfr303I CCGCGG 1 cut(s) 564
SgrBI CCGCGG 1 cut(s) 564
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 5 cut(s) 242, 480, 642, 762, 784
SseBI AGGCCT 1 cut(s) 658
SsiI CCGC 4 cut(s) 176, 561, 563, 907
SspMI CTAG 4 cut(s) 197, 266, 545, 660
StuI AGGCCT 1 cut(s) 658
StyI CCWWGG 1 cut(s) 653
TaiI ACGT 1 cut(s) 323
TaqI TCGA 4 cut(s) 61, 65, 429, 680
TasI AATT 5 cut(s) 242, 480, 642, 762, 784
TauI GCSGC 1 cut(s) 563
TfiI GAWTC 4 cut(s) 179, 350, 817, 851
Tru1I TTAA 1 cut(s) 943
Tru9I TTAA 1 cut(s) 943
TscAI CASTG 1 cut(s) 678
TseFI GTSAC 4 cut(s) 84, 316, 669, 710
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 4 cut(s) 84, 316, 669, 710
TspDTI ATGAA 9 cut(s) 15, 20, 147, 380, 435, 485, 540, 615, 749
TspRI CASTG 1 cut(s) 678
XagI CCTNNNNNAGG 1 cut(s) 581
XbaI TCTAGA 1 cut(s) 544
XceI RCATGY 2 cut(s) 775, 934
XmnI GAANNNNTTC 1 cut(s) 531
XspI CTAG 4 cut(s) 197, 266, 545, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.