Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007566

Physical Location & Seq

Genomic Coordinates Forward (+)

10389221 .. 10390611

Gene Structure 1391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47272

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGTATTGGCTAGAATAAAGGTTGTGTTGAACGAGAGAATGACAGAGGTGAAGCAGATGAGGCATGACATCGCTTCACTCCTTCAGAAAGGTCAAGAAGTCACTGCTCGTATCTTGATTGAACATTTGACAAGAGACCAGAATTCTTTGGCTGCCTATGAACTCATTAGGCTCTTCTGCCAATTGGTCGTGGAAAGACTTTTAATCATCGAAAAGCAAAGTTTGATCTTTGCAGCCCCAAGGTGCTGCCATATTCCAGAACTAATGACAGTCAGGAATATTTTTGAGAAGAAATATGGAAGAGATTTTGTATCTGCAGCTAGTGATCTAAGACCTGAGTGTGGAGTGAATGGAAAGATGATTGAGAATCTCTCTATCAAAACCCCCAGTGGTGAAGTGAAGTTGAAACTCATGAAGGAAATAGCCAATGAGTATCGGGTTGAATGGGATGCAACAGAAAAGGAGTTTTTCAAGCCTACAGAAGAGCTTATAGTAGGACCAAAAACTTTTGTTAGTGGTGCTACATTACCTCTGCAATCTGTTCAGTTGAACAAGTTCGAGAAAACAAGTGGTGGAGAAAGGGGAAATATGCATTATCAAGGCGCACCATCAGCCGCGGAAGCAGCTGTGATATTTGCCAGTGAGGCAATGTCTGCTGCACAAGCTGCTGCAATTCTTGCCAATCAGGTATCATCTCAAGCACCTCACTGTGTTGATACTGTGTCCAAGACTCGAAACATCGATGATCATGAAGAATTAGCTGTTGATGAGGAAGAGACGCTTCTTAGTGATGATGAAATTTTTGCACGCTTTCAGGCGCTGAAGTTGCACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 ko04144 map00592 map01100 map01110 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

278

Amino Acids

31.17

Weight (kDa)

5.74

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ist1	PF03398	1 - 148	4.5e-40	Regulator of Vps4 activity in the MVB pathway

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35720
fragaria_vesca	FvH4_1g10720 FvH4_1g10730
malus_domestica	MD02G1121200.v1.1 MD15G1235000.v1.1
prunus_persica	Prupe.7G178100_v2.0.a1
pyrus_communis	pycom15g20920
rosa_chinensis	RchiOBHm_Chr2g0097881 RchiOBHm_Chr2g0097891
rosa_laevigata	RLG00000016743
rosa_multiflora	Rmu_co8303561.1_g000001 Rmu_sc0009572.1_g000010
rosa_roxburghii	Rroxscaffold_2G00144470
rosa_rugosa	Rorug02G0069000
rosa_samantha	Rh2AG115700 Rh2AG115800 Rh2BG118600 Rh2BG118700 Rh2CG120100 Rh2CG120300 Rh2DG119900 Rh2DG120000
rosa_wichuraiana	Rw2G009050 Rw2G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	617
AciI	CCGC	2 cut(s)	615, 617
AcsI	RAATTY	2 cut(s)	142, 798
AcuI	CTGAAG	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	6 cut(s)	31, 122, 406, 443, 472, 550
AluBI	AGCT	5 cut(s)	320, 487, 626, 665, 761
AluI	AGCT	5 cut(s)	320, 487, 626, 665, 761
Alw26I	GTCTC	2 cut(s)	129, 770
AlwNI	CAGNNNCTG	1 cut(s)	820
ApeKI	GCWGC	8 cut(s)	152, 233, 246, 317, 623, 656, 665, 668
ApoI	RAATTY	2 cut(s)	142, 798
Asp700I	GAANNNNTTC	1 cut(s)	554
AspLEI	GCGC	2 cut(s)	605, 820
AspS9I	GGNCC	1 cut(s)	497
AsuHPI	GGTGA	2 cut(s)	61, 404
AvaII	GGWCC	1 cut(s)	497
BbvI	GCAGC	8 cut(s)	139, 233, 245, 329, 635, 643, 652, 655
BccI	CCATC	1 cut(s)	616
BclI	TGATCA	1 cut(s)	745
BcoDI	GTCTC	2 cut(s)	129, 770
BfaI	CTAG	2 cut(s)	12, 321
BfmI	CTRYAG	2 cut(s)	315, 477
BfoI	RGCGCY	1 cut(s)	821
BglI	GCCNNNNNGGC	1 cut(s)	644
BisI	GCNGC	9 cut(s)	153, 234, 247, 318, 615, 624, 657, 666, 669
BlsI	GCNGC	9 cut(s)	154, 235, 248, 319, 616, 625, 658, 667, 670
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	497
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	1 cut(s)	439
BmuI	ACTGGG	1 cut(s)	381
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
BpuEI	CTTGAG	1 cut(s)	681
Bsa29I	ATCGAT	1 cut(s)	741
BsaI	GGTCTC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	239, 615
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	2 cut(s)	387, 639
Bse3DI	GCAATG	1 cut(s)	654
BseCI	ATCGAT	1 cut(s)	741
BseDI	CCNNGG	2 cut(s)	239, 615
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMI	GCAATG	1 cut(s)	654
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	2 cut(s)	387, 639
BseXI	GCAGC	8 cut(s)	139, 233, 245, 329, 635, 643, 652, 655
BsgI	GTGCAG	1 cut(s)	642
Bsh1236I	CGCG	1 cut(s)	617
BshVI	ATCGAT	1 cut(s)	741
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	2 cut(s)	129, 770
BsmBI	CGTCTC	1 cut(s)	770
Bso31I	GGTCTC	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	225, 325, 745
BspACI	CCGC	2 cut(s)	615, 617
BspCNI	CTCAG	1 cut(s)	328
BspDI	ATCGAT	1 cut(s)	741
BspFNI	CGCG	1 cut(s)	617
BspHI	TCATGA	2 cut(s)	411, 748
BspMAI	CTGCAG	1 cut(s)	319
BspQI	GCTCTTC	2 cut(s)	179, 477
BspTNI	GGTCTC	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	654
BsrI	ACTGG	2 cut(s)	387, 639
BssECI	CCNNGG	2 cut(s)	239, 615
BssMI	GATC	3 cut(s)	225, 325, 745
BssT1I	CCWWGG	1 cut(s)	239
Bst4CI	ACNGT	3 cut(s)	271, 710, 721
Bst6I	CTCTTC	4 cut(s)	179, 295, 477, 768
BstAPI	GCANNNNNTGC	3 cut(s)	653, 665, 677
BstC8I	GCNNGC	1 cut(s)	808
BstDEI	CTNAG	3 cut(s)	329, 336, 785
BstDSI	CCRYGG	1 cut(s)	615
BstF5I	GGATG	1 cut(s)	454
BstFNI	CGCG	1 cut(s)	617
BstH2I	RGCGCY	1 cut(s)	821
BstHHI	GCGC	2 cut(s)	605, 820
BstKTI	GATC	3 cut(s)	228, 328, 748
BstMAI	GTCTC	2 cut(s)	129, 770
BstMBI	GATC	3 cut(s)	225, 325, 745
BstSFI	CTRYAG	2 cut(s)	315, 477
BstUI	CGCG	1 cut(s)	617
BstV1I	GCAGC	8 cut(s)	139, 233, 245, 329, 635, 643, 652, 655
Bsu15I	ATCGAT	1 cut(s)	741
BsuTUI	ATCGAT	1 cut(s)	741
BtgI	CCRYGG	1 cut(s)	615
BtgZI	GCGATG	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	454
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	4 cut(s)	102, 394, 646, 706
Cac8I	GCNNGC	1 cut(s)	808
CaiI	CAGNNNCTG	1 cut(s)	820
CciI	TCATGA	2 cut(s)	411, 748
CfoI	GCGC	2 cut(s)	605, 820
Cfr13I	GGNCC	1 cut(s)	497
Cfr42I	CCGCGG	1 cut(s)	618
ClaI	ATCGAT	1 cut(s)	741
CseI	GACGC	1 cut(s)	787
CviAII	CATG	3 cut(s)	65, 412, 749
DdeI	CTNAG	3 cut(s)	329, 336, 785
DpnI	GATC	3 cut(s)	227, 327, 747
DpnII	GATC	3 cut(s)	225, 325, 745
Eam1104I	CTCTTC	4 cut(s)	179, 295, 477, 768
EarI	CTCTTC	4 cut(s)	179, 295, 477, 768
Eco130I	CCWWGG	1 cut(s)	239
Eco31I	GGTCTC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	497
Eco57I	CTGAAG	1 cut(s)	68
EcoRI	GAATTC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	239
EcoT22I	ATGCAT	1 cut(s)	594
ErhI	CCWWGG	1 cut(s)	239
Esp3I	CGTCTC	1 cut(s)	770
FaeI	CATG	3 cut(s)	68, 415, 752
FaiI	YATR	8 cut(s)	66, 159, 252, 297, 413, 491, 590, 750
FalI	AAGNNNNNCTT	2 cut(s)	765, 797
FatI	CATG	3 cut(s)	64, 411, 748
FbaI	TGATCA	1 cut(s)	745
Fnu4HI	GCNGC	9 cut(s)	153, 234, 247, 318, 615, 624, 657, 666, 669
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	9 cut(s)	153, 234, 247, 318, 615, 624, 657, 666, 669
FspBI	CTAG	2 cut(s)	12, 321
GlaI	GCGC	2 cut(s)	604, 819
GluI	GCNGC	9 cut(s)	153, 234, 247, 318, 615, 624, 657, 666, 669
HaeII	RGCGCY	1 cut(s)	821
HgaI	GACGC	1 cut(s)	787
HhaI	GCGC	2 cut(s)	605, 820
Hin1II	CATG	3 cut(s)	68, 415, 752
Hin6I	GCGC	2 cut(s)	603, 818
HinP1I	GCGC	2 cut(s)	603, 818
HinfI	GANTC	2 cut(s)	367, 730
HphI	GGTGA	2 cut(s)	61, 404
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	7 cut(s)	95, 115, 257, 274, 412, 559, 749
HpyAV	CCTTC	2 cut(s)	92, 409
HpyCH4III	ACNGT	3 cut(s)	271, 710, 721
HpyCH4V	TGCA	9 cut(s)	233, 317, 452, 535, 592, 659, 671, 806, 829
HpyF3I	CTNAG	3 cut(s)	329, 336, 785
Hsp92II	CATG	3 cut(s)	68, 415, 752
HspAI	GCGC	2 cut(s)	603, 818
Ksp22I	TGATCA	1 cut(s)	745
KspI	CCGCGG	1 cut(s)	618
Kzo9I	GATC	3 cut(s)	225, 325, 745
LguI	GCTCTTC	2 cut(s)	179, 477
LpnPI	CCDG	8 cut(s)	152, 259, 270, 348, 400, 652, 671, 800
Lsp1109I	GCAGC	8 cut(s)	139, 233, 245, 329, 635, 643, 652, 655
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	2 cut(s)	12, 321
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	3 cut(s)	227, 327, 747
MboI	GATC	3 cut(s)	225, 325, 745
MboII	GAAGA	6 cut(s)	166, 301, 312, 494, 764, 785
MfeI	CAATTG	1 cut(s)	182
MluCI	AATT	5 cut(s)	142, 182, 672, 755, 798
MlyI	GAGTC	1 cut(s)	724
MnlI	CCTC	6 cut(s)	40, 54, 540, 637, 714, 763
Mph1103I	ATGCAT	1 cut(s)	594
MroXI	GAANNNNTTC	1 cut(s)	554
MseI	TTAA	1 cut(s)	203
MspA1I	CMGCKG	2 cut(s)	617, 626
MunI	CAATTG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	617
NdeII	GATC	3 cut(s)	225, 325, 745
NlaIII	CATG	3 cut(s)	68, 415, 752
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	594
PagI	TCATGA	2 cut(s)	411, 748
PciSI	GCTCTTC	2 cut(s)	179, 477
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	9 cut(s)	154, 235, 248, 319, 616, 625, 658, 667, 670
PleI	GAGTC	1 cut(s)	724
PpsI	GAGTC	1 cut(s)	724
PspPI	GGNCC	1 cut(s)	497
PstI	CTGCAG	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	820
PvuII	CAGCTG	1 cut(s)	626
SacII	CCGCGG	1 cut(s)	618
SapI	GCTCTTC	2 cut(s)	179, 477
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	9 cut(s)	153, 234, 247, 318, 615, 624, 657, 666, 669
Sau3AI	GATC	3 cut(s)	225, 325, 745
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	1 cut(s)	724
SfaNI	GCATC	1 cut(s)	439
SfcI	CTRYAG	2 cut(s)	315, 477
Sfr303I	CCGCGG	1 cut(s)	618
SgrBI	CCGCGG	1 cut(s)	618
SinI	GGWCC	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	696
SmoI	CTYRAG	1 cut(s)	696
Sse9I	AATT	5 cut(s)	142, 182, 672, 755, 798
SsiI	CCGC	2 cut(s)	615, 617
SspI	AATATT	1 cut(s)	280
SspMI	CTAG	2 cut(s)	12, 321
StyI	CCWWGG	1 cut(s)	239
TaaI	ACNGT	3 cut(s)	271, 710, 721
TaqI	TCGA	4 cut(s)	210, 558, 733, 741
TasI	AATT	5 cut(s)	142, 182, 672, 755, 798
TauI	GCSGC	1 cut(s)	617
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	4 cut(s)	109, 394, 646, 713
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	8 cut(s)	152, 233, 246, 317, 623, 656, 665, 668
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	4 cut(s)	174, 428, 765, 810
TspRI	CASTG	4 cut(s)	109, 394, 646, 713
VpaK11BI	GGWCC	1 cut(s)	497
XapI	RAATTY	2 cut(s)	142, 798
XmnI	GAANNNNTTC	1 cut(s)	554
XspI	CTAG	2 cut(s)	12, 321
Zsp2I	ATGCAT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.