MD15G1235000.v1.1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0007566
Physical Location & Seq
Forward (+)
19320233 .. 19321183
951 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1235000.v1.1.491

Sequence Viewer

Length: 951 bp
ATGATGAAAAGAGCAACAATGGCTTCATTCTCTACCAAACCTTCAAAGCTTTACAATGTTCGATCGATTAGTATGCCGGTTAGGTCACATCCAAGCACACTCAGAACCGAGGAAGAGCTGAACAAGCTCAAGGCTTTGGAGGCAGCATTGACATCTTCATCGTCGCCGGCGTCGTCGAAGGCGGATTCAATATGCAAAGCGCTAGGTGGGCTCAAAGAGTTATACTTTTGCATTGAGGAACTTCTTCAATTGCCATTGACACAACAGGCTCTAGCCCTTCACCAGAAAGAGAAATGGGTTGAAGAGCTGTTGGACGGTTCTGTCACGTACTTGGATGTTTGTGGCAACACAAGGGATTCCATTTTGACGATGAAGGAAAGCGTTAGAGATCTTCAATCCACGCTTCGGAGAAGAAAGGTGGGAGATTCGAGCATCGAAGACAATGTGAGTTCATATGTTCGCATAAGAAAAAAGATGAAGAAGGAAATTGTGCAGTTTATGGCATCGTTGAAGCAAATGGATCAAAAATATGAAGCATTTCCTTTGGATATAGACAACCATCTCGCCGCGGTGGTGAGAGTCCTGAGAGAGGCAAGTTTGATCACCAGTTCCATTTTTCACTTCCTGTCTTCATTCCTTTCCACTCCAATTCTGAAGCCAAGGCCTAGCAGATGGTCATTGGTTTCGATTTTGTTGCACAAAGGGGTGTTGGTTTGTGACAACAACCAACACAAAAGCATGAACGAGCTGGAAAATGTAGATATTGCAATTAGCAACATGCTTGTCAATAATTCAGGTGAAGGTTTTGAGGATGATCAGAAGACTCAATCTGCACAAAGAAGGTTGGAGGTCTTGGATTCAAGCATTGAAGGCATTGAAAATGGTTTGGAGTGCTTGTTTAGGCTCTTGATCCGCACTAGAGTCTCTCTCCTAAACATGCTTTCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

317

Amino Acids

35.63

Weight (kDa)

8.65

Isoelectric Point (pI)

60.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 68 - 313 1.5e-87 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
AccII CGCG 1 cut(s) 569
AciI CCGC 4 cut(s) 182, 567, 569, 913
AclWI GGATC 2 cut(s) 528, 904
AcuI CTGAAG 1 cut(s) 674
AcyI GRCGYC 1 cut(s) 170
AfaI GTAC 1 cut(s) 329
AfeI AGCGCT 1 cut(s) 201
AfiI CCNNNNNNNGG 2 cut(s) 405, 589
AgsI TTSAA 9 cut(s) 45, 189, 248, 302, 395, 511, 861, 869, 878
AluBI AGCT 5 cut(s) 49, 118, 127, 307, 748
AluI AGCT 5 cut(s) 49, 118, 127, 307, 748
Alw26I GTCTC 1 cut(s) 928
AlwI GGATC 2 cut(s) 528, 904
Aor51HI AGCGCT 1 cut(s) 201
AoxI GGCC 1 cut(s) 662
ApeKI GCWGC 1 cut(s) 143
Asp700I GAANNNNTTC 2 cut(s) 243, 537
AspLEI GCGC 1 cut(s) 202
AsuHPI GGTGA 4 cut(s) 272, 586, 595, 809
BanII GRGCYC 1 cut(s) 213
BbsI GAAGAC 3 cut(s) 444, 621, 827
BbvI GCAGC 1 cut(s) 155
BccI CCATC 2 cut(s) 567, 666
BcgI CGANNNNNNTGC 4 cut(s) 55, 89, 676, 710
BclI TGATCA 2 cut(s) 600, 814
BcoDI GTCTC 1 cut(s) 928
BfaI CTAG 4 cut(s) 203, 272, 666, 918
BfoI RGCGCY 1 cut(s) 203
BglII AGATCT 1 cut(s) 388
BisI GCNGC 2 cut(s) 144, 567
BlsI GCNGC 2 cut(s) 145, 568
BmsI GCATC 2 cut(s) 441, 512
BpiI GAAGAC 3 cut(s) 444, 621, 827
BplI GAGNNNNNCTC 2 cut(s) 912, 944
BpuEI CTTGAG 1 cut(s) 113
Bsa29I ATCGAT 1 cut(s) 65
BsaAI YACGTR 1 cut(s) 327
BsaHI GRCGYC 1 cut(s) 170
BsaJI CCNNGG 3 cut(s) 108, 567, 659
BsaXI ACNNNNNCTCC 2 cut(s) 881, 911
Bsc4I CCNNNNNNNGG 2 cut(s) 405, 589
Bse118I RCCGGY 2 cut(s) 76, 166
Bse1I ACTGG 1 cut(s) 606
BseCI ATCGAT 1 cut(s) 65
BseDI CCNNGG 3 cut(s) 108, 567, 659
BseGI GGATG 3 cut(s) 88, 340, 817
BseLI CCNNNNNNNGG 2 cut(s) 405, 589
BseMII CTCAG 2 cut(s) 115, 575
BseNI ACTGG 1 cut(s) 606
BseXI GCAGC 1 cut(s) 155
BsgI GTGCAG 2 cut(s) 512, 816
Bsh1236I CGCG 1 cut(s) 569
Bsh1285I CGRYCG 1 cut(s) 65
BshFI GGCC 1 cut(s) 664
BshVI ATCGAT 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 65
BsiSI CCGG 2 cut(s) 77, 167
BslI CCNNNNNNNGG 2 cut(s) 405, 589
BsmAI GTCTC 1 cut(s) 928
BsnI GGCC 1 cut(s) 664
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 6 cut(s) 62, 388, 520, 600, 814, 909
BspACI CCGC 4 cut(s) 182, 567, 569, 913
BspANI GGCC 1 cut(s) 664
BspCNI CTCAG 2 cut(s) 114, 576
BspDI ATCGAT 1 cut(s) 65
BspFNI CGCG 1 cut(s) 569
BspPI GGATC 2 cut(s) 528, 904
BspQI GCTCTTC 2 cut(s) 108, 297
BsrFI RCCGGY 2 cut(s) 76, 166
BsrI ACTGG 1 cut(s) 606
BssAI RCCGGY 2 cut(s) 76, 166
BssECI CCNNGG 3 cut(s) 108, 567, 659
BssMI GATC 6 cut(s) 62, 388, 520, 600, 814, 909
BssNI GRCGYC 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 659
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 2 cut(s) 108, 297
BstACI GRCGYC 1 cut(s) 170
BstBAI YACGTR 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 101, 584
BstDSI CCRYGG 1 cut(s) 567
BstENI CCTNNNNNAGG 1 cut(s) 587
BstF5I GGATG 3 cut(s) 88, 340, 817
BstFNI CGCG 1 cut(s) 569
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 6 cut(s) 65, 391, 523, 603, 817, 912
BstMAI GTCTC 1 cut(s) 928
BstMBI GATC 6 cut(s) 62, 388, 520, 600, 814, 909
BstMCI CGRYCG 1 cut(s) 65
BstMWI GCNNNNNNNGC 5 cut(s) 20, 124, 140, 208, 870
BstNSI RCATGY 2 cut(s) 781, 940
BstUI CGCG 1 cut(s) 569
BstV1I GCAGC 1 cut(s) 155
BstV2I GAAGAC 3 cut(s) 444, 621, 827
BstX2I RGATCY 1 cut(s) 388
BstYI RGATCY 1 cut(s) 388
Bsu15I ATCGAT 1 cut(s) 65
BsuRI GGCC 1 cut(s) 664
BsuTUI ATCGAT 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 3 cut(s) 88, 340, 817
Cac8I GCNNGC 1 cut(s) 168
CfoI GCGC 1 cut(s) 202
Cfr10I RCCGGY 2 cut(s) 76, 166
Cfr42I CCGCGG 1 cut(s) 570
ClaI ATCGAT 1 cut(s) 65
CseI GACGC 1 cut(s) 159
Csp6I GTAC 1 cut(s) 328
CviAII CATG 3 cut(s) 739, 778, 937
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 2 cut(s) 101, 584
DpnI GATC 6 cut(s) 64, 390, 522, 602, 816, 911
DpnII GATC 6 cut(s) 62, 388, 520, 600, 814, 909
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
Eam1104I CTCTTC 2 cut(s) 108, 297
EarI CTCTTC 2 cut(s) 108, 297
EciI GGCGGA 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 659
Eco147I AGGCCT 1 cut(s) 664
Eco24I GRGCYC 1 cut(s) 213
Eco47III AGCGCT 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 674
EcoNI CCTNNNNNAGG 1 cut(s) 587
EcoT14I CCWWGG 1 cut(s) 659
EcoT38I GRGCYC 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 659
FaeI CATG 3 cut(s) 742, 781, 940
FatI CATG 3 cut(s) 738, 777, 936
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 2 cut(s) 600, 814
Fnu4HI GCNGC 2 cut(s) 144, 567
FokI GGATG 3 cut(s) 75, 347, 824
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 2 cut(s) 144, 567
FspBI CTAG 4 cut(s) 203, 272, 666, 918
GlaI GCGC 1 cut(s) 201
GluI GCNGC 2 cut(s) 144, 567
HaeII RGCGCY 1 cut(s) 203
HaeIII GGCC 1 cut(s) 664
HapII CCGG 2 cut(s) 77, 167
HgaI GACGC 1 cut(s) 159
HhaI GCGC 1 cut(s) 202
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 3 cut(s) 742, 781, 940
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 7 cut(s) 185, 356, 425, 579, 823, 857, 921
HpaII CCGG 2 cut(s) 77, 167
HphI GGTGA 4 cut(s) 272, 586, 595, 809
Hpy188I TCNGA 4 cut(s) 104, 408, 654, 819
Hpy188III TCNNGA 2 cut(s) 583, 907
Hpy99I CGWCG 3 cut(s) 166, 175, 178
HpyAV CCTTC 8 cut(s) 51, 172, 287, 367, 475, 794, 834, 863
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 6 cut(s) 195, 231, 493, 697, 767, 833
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 124, 140, 208, 870
HpyF3I CTNAG 2 cut(s) 101, 584
HpySE526I ACGT 1 cut(s) 326
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 3 cut(s) 742, 781, 940
HspAI GCGC 1 cut(s) 200
KroI GCCGGC 1 cut(s) 166
KroNI GCCGGC 1 cut(s) 168
Ksp22I TGATCA 2 cut(s) 600, 814
KspI CCGCGG 1 cut(s) 570
Kzo9I GATC 6 cut(s) 62, 388, 520, 600, 814, 909
LguI GCTCTTC 2 cut(s) 108, 297
LpnPI CCDG 9 cut(s) 90, 180, 251, 296, 596, 619, 638, 734, 780
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 2 cut(s) 441, 512
MaeI CTAG 4 cut(s) 203, 272, 666, 918
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 3 cut(s) 84, 322, 716
MalI GATC 6 cut(s) 64, 390, 522, 602, 816, 911
MboI GATC 6 cut(s) 62, 388, 520, 600, 814, 909
MfeI CAATTG 1 cut(s) 248
MflI RGATCY 1 cut(s) 388
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 5 cut(s) 248, 486, 648, 768, 790
MlyI GAGTC 3 cut(s) 588, 817, 930
MmeI TCCRAC 2 cut(s) 291, 825
MnlI CCTC 6 cut(s) 103, 133, 229, 583, 802, 841
MreI CGCCGGCG 1 cut(s) 166
MroNI GCCGGC 1 cut(s) 166
MroXI GAANNNNTTC 2 cut(s) 243, 537
MseI TTAA 1 cut(s) 949
MspA1I CMGCKG 1 cut(s) 569
MspI CCGG 2 cut(s) 77, 167
MunI CAATTG 1 cut(s) 248
MvnI CGCG 1 cut(s) 569
MwoI GCNNNNNNNGC 5 cut(s) 20, 124, 140, 208, 870
NaeI GCCGGC 1 cut(s) 168
NdeI CATATG 1 cut(s) 454
NdeII GATC 6 cut(s) 62, 388, 520, 600, 814, 909
NgoMIV GCCGGC 1 cut(s) 166
NlaIII CATG 3 cut(s) 742, 781, 940
NmuCI GTSAC 3 cut(s) 84, 322, 716
NspI RCATGY 2 cut(s) 781, 940
PceI AGGCCT 1 cut(s) 664
PciSI GCTCTTC 2 cut(s) 108, 297
PcsI WCGNNNNNNNCGW 2 cut(s) 167, 170
PdiI GCCGGC 1 cut(s) 168
PdmI GAANNNNTTC 2 cut(s) 243, 537
PfeI GAWTC 4 cut(s) 185, 356, 425, 857
PkrI GCNGC 2 cut(s) 145, 568
Ple19I CGATCG 1 cut(s) 65
PleI GAGTC 3 cut(s) 587, 817, 929
PpsI GAGTC 3 cut(s) 587, 817, 929
Ppu21I YACGTR 1 cut(s) 327
PsuI RGATCY 1 cut(s) 388
PvuI CGATCG 1 cut(s) 65
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SacII CCGCGG 1 cut(s) 570
SapI GCTCTTC 2 cut(s) 108, 297
SaqAI TTAA 1 cut(s) 949
SatI GCNGC 2 cut(s) 144, 567
Sau3AI GATC 6 cut(s) 62, 388, 520, 600, 814, 909
SchI GAGTC 3 cut(s) 588, 817, 930
SduI GDGCHC 1 cut(s) 213
SfaNI GCATC 2 cut(s) 441, 512
Sfr303I CCGCGG 1 cut(s) 570
SgrAI CRCCGGYG 1 cut(s) 166
SgrBI CCGCGG 1 cut(s) 570
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 5 cut(s) 248, 486, 648, 768, 790
SseBI AGGCCT 1 cut(s) 664
SsiI CCGC 4 cut(s) 182, 567, 569, 913
SspMI CTAG 4 cut(s) 203, 272, 666, 918
StuI AGGCCT 1 cut(s) 664
StyI CCWWGG 1 cut(s) 659
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 1 cut(s) 329
TaqI TCGA 6 cut(s) 61, 65, 176, 428, 435, 686
TasI AATT 5 cut(s) 248, 486, 648, 768, 790
TauI GCSGC 1 cut(s) 569
TfiI GAWTC 4 cut(s) 185, 356, 425, 857
Tru1I TTAA 1 cut(s) 949
Tru9I TTAA 1 cut(s) 949
TseFI GTSAC 3 cut(s) 84, 322, 716
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 3 cut(s) 84, 322, 716
TspDTI ATGAA 9 cut(s) 15, 20, 147, 386, 441, 491, 546, 621, 755
XagI CCTNNNNNAGG 1 cut(s) 587
XceI RCATGY 2 cut(s) 781, 940
XmnI GAANNNNTTC 2 cut(s) 243, 537
XspI CTAG 4 cut(s) 203, 272, 666, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.