Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8303561.1

Orthogroup ID

OG0007566

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 901

Gene Structure 901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8303561.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 650 bp

tcttatccaactctactgacatttcttacaggcaatgtccgcctgatttgaaagaagggattgctagtttgatctttgcagccccaaggtgctgcgagattccagaactaatgacagtcaggaatatttttgagaagaaatatggaagagattttgtatctgcagctagtgatctaagacctgagtgtggagtgaatggaaagatgattgagaatctctctatcaaaacccccagtagtgaagtgaagttgaaactcatgaaggaaatagccaatgagtatagggttgaatgggatgcaacaaaatatgaaaaggagtttttcaagcctacagaagagcttatagaaggaccaaaaacttttgttagtggtgctacattacctctgcaatctgttcagttgaacaagttcgagaaaacaagtggtggagaaaggggaaatatgcattatcaagacgcaccatcagccgtggaagcagctgtgatatttgctagtgaggcaatgtctgctgcacaagctgctgcaattcttgccaatcaggcatcatctcaagcacctcattgtgttgatactgtgtccaagactcgaaacatcgatgatcatgaagaattagctgttgatgaggaagagacgcttcttagtgatgatgaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 ko04144 map00592 map01100 map01110 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

216

Amino Acids

23.83

Weight (kDa)

4.73

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35720
fragaria_vesca	FvH4_1g10720 FvH4_1g10730
malus_domestica	MD02G1121200.v1.1 MD15G1235000.v1.1
prunus_persica	Prupe.7G178100_v2.0.a1
pyrus_communis	pycom15g20920
rosa_chinensis	RchiOBHm_Chr2g0097881 RchiOBHm_Chr2g0097891
rosa_laevigata	RLG00000016743
rosa_multiflora	Rmu_co8303561.1_g000001 Rmu_sc0009572.1_g000010
rosa_roxburghii	Rroxscaffold_2G00144470
rosa_rugosa	Rorug02G0069000
rosa_samantha	Rh2AG115700 Rh2AG115800 Rh2BG118600 Rh2BG118700 Rh2CG120100 Rh2CG120300 Rh2DG119900 Rh2DG120000
rosa_wichuraiana	Rw2G009050 Rw2G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	40
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	5 cut(s)	51, 252, 289, 324, 402
AluBI	AGCT	5 cut(s)	166, 339, 478, 517, 613
AluI	AGCT	5 cut(s)	166, 339, 478, 517, 613
Alw26I	GTCTC	1 cut(s)	622
ApeKI	GCWGC	7 cut(s)	79, 92, 163, 475, 508, 517, 520
Asp700I	GAANNNNTTC	1 cut(s)	406
AspS9I	GGNCC	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	349
BbvI	GCAGC	7 cut(s)	79, 91, 175, 487, 495, 504, 507
BccI	CCATC	1 cut(s)	468
BceAI	ACGGC	1 cut(s)	451
BclI	TGATCA	1 cut(s)	597
BcoDI	GTCTC	1 cut(s)	622
BfaI	CTAG	3 cut(s)	65, 167, 491
BfmI	CTRYAG	2 cut(s)	161, 329
BglI	GCCNNNNNGGC	1 cut(s)	538
BisI	GCNGC	7 cut(s)	80, 93, 164, 476, 509, 518, 521
BlsI	GCNGC	7 cut(s)	81, 94, 165, 477, 510, 519, 522
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmrI	ACTGGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	285, 550
BmuI	ACTGGG	1 cut(s)	227
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
BpuEI	CTTGAG	1 cut(s)	533
Bsa29I	ATCGAT	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	85, 467
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	2 cut(s)	40, 506
BseCI	ATCGAT	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	85, 467
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMI	GCAATG	2 cut(s)	40, 506
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	233
BseXI	GCAGC	7 cut(s)	79, 91, 175, 487, 495, 504, 507
BsgI	GTGCAG	1 cut(s)	494
BshVI	ATCGAT	1 cut(s)	593
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	622
BsmBI	CGTCTC	1 cut(s)	622
Bsp143I	GATC	3 cut(s)	71, 171, 597
BspACI	CCGC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	174
BspDI	ATCGAT	1 cut(s)	593
BspHI	TCATGA	2 cut(s)	257, 600
BspMAI	CTGCAG	1 cut(s)	165
BspQI	GCTCTTC	1 cut(s)	329
BsrDI	GCAATG	2 cut(s)	40, 506
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	85, 467
BssMI	GATC	3 cut(s)	71, 171, 597
BssT1I	CCWWGG	1 cut(s)	85
Bst4CI	ACNGT	2 cut(s)	117, 573
Bst6I	CTCTTC	3 cut(s)	141, 329, 620
BstAPI	GCANNNNNTGC	3 cut(s)	505, 517, 529
BstDEI	CTNAG	3 cut(s)	175, 182, 637
BstDSI	CCRYGG	1 cut(s)	467
BstF5I	GGATG	1 cut(s)	300
BstKTI	GATC	3 cut(s)	74, 174, 600
BstMAI	GTCTC	1 cut(s)	622
BstMBI	GATC	3 cut(s)	71, 171, 597
BstMWI	GCNNNNNNNGC	9 cut(s)	39, 463, 472, 496, 505, 514, 517, 529, 538
BstSFI	CTRYAG	2 cut(s)	161, 329
BstV1I	GCAGC	7 cut(s)	79, 91, 175, 487, 495, 504, 507
Bsu15I	ATCGAT	1 cut(s)	593
BsuTUI	ATCGAT	1 cut(s)	593
BtgI	CCRYGG	1 cut(s)	467
BtsCI	GGATG	1 cut(s)	300
CciI	TCATGA	2 cut(s)	257, 600
Cfr13I	GGNCC	1 cut(s)	349
ClaI	ATCGAT	1 cut(s)	593
CseI	GACGC	2 cut(s)	463, 639
CviAII	CATG	2 cut(s)	258, 601
CviJI	RGCY	9 cut(s)	82, 166, 271, 327, 339, 466, 478, 517, 613
CviKI_1	RGCY	9 cut(s)	82, 166, 271, 327, 339, 466, 478, 517, 613
DdeI	CTNAG	3 cut(s)	175, 182, 637
DpnI	GATC	3 cut(s)	73, 173, 599
DpnII	GATC	3 cut(s)	71, 171, 597
Eam1104I	CTCTTC	3 cut(s)	141, 329, 620
EarI	CTCTTC	3 cut(s)	141, 329, 620
EciI	GGCGGA	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	85
EcoT22I	ATGCAT	1 cut(s)	446
ErhI	CCWWGG	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	622
FaeI	CATG	2 cut(s)	261, 604
FaiI	YATR	7 cut(s)	143, 259, 281, 308, 343, 442, 602
FalI	AAGNNNNNCTT	2 cut(s)	617, 649
FatI	CATG	2 cut(s)	257, 600
FbaI	TGATCA	1 cut(s)	597
Fnu4HI	GCNGC	7 cut(s)	80, 93, 164, 476, 509, 518, 521
FokI	GGATG	1 cut(s)	307
Fsp4HI	GCNGC	7 cut(s)	80, 93, 164, 476, 509, 518, 521
FspBI	CTAG	3 cut(s)	65, 167, 491
GluI	GCNGC	7 cut(s)	80, 93, 164, 476, 509, 518, 521
HgaI	GACGC	2 cut(s)	463, 639
Hin1II	CATG	2 cut(s)	261, 604
HinfI	GANTC	3 cut(s)	99, 213, 582
Hpy188III	TCNNGA	6 cut(s)	103, 120, 258, 411, 451, 601
HpyAV	CCTTC	3 cut(s)	49, 255, 340
HpyCH4III	ACNGT	2 cut(s)	117, 573
HpyCH4V	TGCA	7 cut(s)	79, 163, 298, 387, 444, 511, 523
HpyF10VI	GCNNNNNNNGC	9 cut(s)	39, 463, 472, 496, 505, 514, 517, 529, 538
HpyF3I	CTNAG	3 cut(s)	175, 182, 637
Hsp92II	CATG	2 cut(s)	261, 604
Ksp22I	TGATCA	1 cut(s)	597
Kzo9I	GATC	3 cut(s)	71, 171, 597
LguI	GCTCTTC	1 cut(s)	329
LpnPI	CCDG	7 cut(s)	15, 56, 105, 116, 194, 246, 523
Lsp1109I	GCAGC	7 cut(s)	79, 91, 175, 487, 495, 504, 507
LweI	GCATC	2 cut(s)	285, 550
MaeI	CTAG	3 cut(s)	65, 167, 491
MalI	GATC	3 cut(s)	73, 173, 599
MboI	GATC	3 cut(s)	71, 171, 597
MboII	GAAGA	5 cut(s)	147, 158, 346, 616, 637
MluCI	AATT	2 cut(s)	524, 607
MlyI	GAGTC	1 cut(s)	576
MmeI	TCCRAC	1 cut(s)	32
MnlI	CCTC	4 cut(s)	392, 489, 566, 615
Mph1103I	ATGCAT	1 cut(s)	446
MroXI	GAANNNNTTC	1 cut(s)	406
MspA1I	CMGCKG	1 cut(s)	478
MwoI	GCNNNNNNNGC	9 cut(s)	39, 463, 472, 496, 505, 514, 517, 529, 538
NdeII	GATC	3 cut(s)	71, 171, 597
NlaIII	CATG	2 cut(s)	261, 604
NsiI	ATGCAT	1 cut(s)	446
PagI	TCATGA	2 cut(s)	257, 600
PciSI	GCTCTTC	1 cut(s)	329
PdmI	GAANNNNTTC	1 cut(s)	406
PfeI	GAWTC	2 cut(s)	99, 213
PkrI	GCNGC	7 cut(s)	81, 94, 165, 477, 510, 519, 522
PleI	GAGTC	1 cut(s)	576
PpsI	GAGTC	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	349
PstI	CTGCAG	1 cut(s)	165
PvuII	CAGCTG	1 cut(s)	478
SapI	GCTCTTC	1 cut(s)	329
SatI	GCNGC	7 cut(s)	80, 93, 164, 476, 509, 518, 521
Sau3AI	GATC	3 cut(s)	71, 171, 597
Sau96I	GGNCC	1 cut(s)	349
SchI	GAGTC	1 cut(s)	576
SetI	ASST	9 cut(s)	91, 168, 183, 341, 384, 480, 519, 558, 615
SfaNI	GCATC	2 cut(s)	285, 550
SfcI	CTRYAG	2 cut(s)	161, 329
SinI	GGWCC	1 cut(s)	349
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	2 cut(s)	524, 607
SsiI	CCGC	1 cut(s)	40
SspI	AATATT	1 cut(s)	126
SspMI	CTAG	3 cut(s)	65, 167, 491
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	117, 573
TaqI	TCGA	3 cut(s)	410, 585, 593
TasI	AATT	2 cut(s)	524, 607
TfiI	GAWTC	2 cut(s)	99, 213
TseI	GCWGC	7 cut(s)	79, 92, 163, 475, 508, 517, 520
TspDTI	ATGAA	3 cut(s)	274, 323, 617
VpaK11BI	GGWCC	1 cut(s)	349
XmnI	GAANNNNTTC	1 cut(s)	406
XspI	CTAG	3 cut(s)	65, 167, 491
Zsp2I	ATGCAT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.