Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007566

Physical Location & Seq

Genomic Coordinates Forward (+)

10652209 .. 10652554

Gene Structure 346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG120300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGCATTATCAAGACGCACCATCAGCCGCGGAAGCAGCTGTGATATTTGCTAGTGAGGCAATGTCTGCTGCACAAGCTGCTGCAATTCTTGCCAATCAGGCATCATCTCAAGCACCTCACTGTGTTGATACTGTGTCCAAGACTCGAAACATCGATGATCATGAAGAATTAGCTGTTGATGAGGAAGAGACGCTTCTTAGTGATGATGAAATTTTTGCACGCTTTCAGGCGCTGAAGTTGCACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 ko04144 map00592 map01100 map01110 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

82

Amino Acids

8.88

Weight (kDa)

4.45

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35720
fragaria_vesca	FvH4_1g10720 FvH4_1g10730
malus_domestica	MD02G1121200.v1.1 MD15G1235000.v1.1
prunus_persica	Prupe.7G178100_v2.0.a1
pyrus_communis	pycom15g20920
rosa_chinensis	RchiOBHm_Chr2g0097881 RchiOBHm_Chr2g0097891
rosa_laevigata	RLG00000016743
rosa_multiflora	Rmu_co8303561.1_g000001 Rmu_sc0009572.1_g000010
rosa_roxburghii	Rroxscaffold_2G00144470
rosa_rugosa	Rorug02G0069000
rosa_samantha	Rh2AG115700 Rh2AG115800 Rh2BG118600 Rh2BG118700 Rh2CG120100 Rh2CG120300 Rh2DG119900 Rh2DG120000
rosa_wichuraiana	Rw2G009050 Rw2G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	29
AciI	CCGC	2 cut(s)	27, 29
AcsI	RAATTY	1 cut(s)	210
AluBI	AGCT	3 cut(s)	38, 77, 173
AluI	AGCT	3 cut(s)	38, 77, 173
Alw26I	GTCTC	1 cut(s)	182
AlwNI	CAGNNNCTG	1 cut(s)	232
ApeKI	GCWGC	4 cut(s)	35, 68, 77, 80
ApoI	RAATTY	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	232
BbvI	GCAGC	4 cut(s)	47, 55, 64, 67
BccI	CCATC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	233
BglI	GCCNNNNNGGC	1 cut(s)	98
BisI	GCNGC	5 cut(s)	27, 36, 69, 78, 81
BlsI	GCNGC	5 cut(s)	28, 37, 70, 79, 82
BmsI	GCATC	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	93
Bsa29I	ATCGAT	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	66
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	27
BseMI	GCAATG	1 cut(s)	66
BseXI	GCAGC	4 cut(s)	47, 55, 64, 67
BsgI	GTGCAG	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	29
BshVI	ATCGAT	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	182
BsmBI	CGTCTC	1 cut(s)	182
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	2 cut(s)	27, 29
BspDI	ATCGAT	1 cut(s)	153
BspFNI	CGCG	1 cut(s)	29
BspHI	TCATGA	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	157
Bst4CI	ACNGT	2 cut(s)	122, 133
Bst6I	CTCTTC	1 cut(s)	180
BstAPI	GCANNNNNTGC	3 cut(s)	65, 77, 89
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	197
BstDSI	CCRYGG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	157
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	4 cut(s)	47, 55, 64, 67
Bsu15I	ATCGAT	1 cut(s)	153
BsuTUI	ATCGAT	1 cut(s)	153
BtgI	CCRYGG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	220
CaiI	CAGNNNCTG	1 cut(s)	232
CciI	TCATGA	1 cut(s)	160
CfoI	GCGC	1 cut(s)	232
Cfr42I	CCGCGG	1 cut(s)	30
ClaI	ATCGAT	1 cut(s)	153
CseI	GACGC	2 cut(s)	23, 199
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	4 cut(s)	26, 38, 77, 173
CviKI_1	RGCY	4 cut(s)	26, 38, 77, 173
DdeI	CTNAG	1 cut(s)	197
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	1 cut(s)	164
FaiI	YATR	1 cut(s)	162
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FatI	CATG	1 cut(s)	160
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	5 cut(s)	27, 36, 69, 78, 81
Fsp4HI	GCNGC	5 cut(s)	27, 36, 69, 78, 81
FspBI	CTAG	1 cut(s)	51
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	5 cut(s)	27, 36, 69, 78, 81
HaeII	RGCGCY	1 cut(s)	233
HgaI	GACGC	2 cut(s)	23, 199
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	1 cut(s)	164
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	11, 161
HpyCH4III	ACNGT	2 cut(s)	122, 133
HpyCH4V	TGCA	5 cut(s)	4, 71, 83, 218, 241
HpyF3I	CTNAG	1 cut(s)	197
Hsp92II	CATG	1 cut(s)	164
HspAI	GCGC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	157
KspI	CCGCGG	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	157
LpnPI	CCDG	2 cut(s)	83, 212
Lsp1109I	GCAGC	4 cut(s)	47, 55, 64, 67
LweI	GCATC	1 cut(s)	110
MaeI	CTAG	1 cut(s)	51
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	176, 197
MluCI	AATT	3 cut(s)	84, 167, 210
MlyI	GAGTC	1 cut(s)	136
MnlI	CCTC	3 cut(s)	49, 126, 175
Mph1103I	ATGCAT	1 cut(s)	6
MspA1I	CMGCKG	2 cut(s)	29, 38
MvnI	CGCG	1 cut(s)	29
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	1 cut(s)	164
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	160
PkrI	GCNGC	5 cut(s)	28, 37, 70, 79, 82
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	232
PvuII	CAGCTG	1 cut(s)	38
SacII	CCGCGG	1 cut(s)	30
SatI	GCNGC	5 cut(s)	27, 36, 69, 78, 81
Sau3AI	GATC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	136
SetI	ASST	4 cut(s)	40, 79, 118, 175
SfaNI	GCATC	1 cut(s)	110
Sfr303I	CCGCGG	1 cut(s)	30
SgrBI	CCGCGG	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
Sse9I	AATT	3 cut(s)	84, 167, 210
SsiI	CCGC	2 cut(s)	27, 29
SspMI	CTAG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	122, 133
TaqI	TCGA	2 cut(s)	145, 153
TasI	AATT	3 cut(s)	84, 167, 210
TauI	GCSGC	1 cut(s)	29
TscAI	CASTG	1 cut(s)	125
TseI	GCWGC	4 cut(s)	35, 68, 77, 80
TspDTI	ATGAA	2 cut(s)	177, 222
TspRI	CASTG	1 cut(s)	125
XapI	RAATTY	1 cut(s)	210
XspI	CTAG	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.