Rh2BG118600

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007566
Physical Location & Seq
Forward (+)
10087494 .. 10088866
1373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG118600.1

Sequence Viewer

Length: 948 bp
ATGATGAAAAGAGCAACAATGGCTTCTTTCTCGCCAAAACCCACAAAGCGCTACAATGTCAGATCCATTAGTATGCCCACCAGATCACACCCCACCACACTCAGAATTGAAGAAGAGCTCAACAAGCTCAAGTCTTGGGAGGCAACTTCAACATCTTCATCTTCATCAAATTGTTCGAAGGCAGATTCACTAGACAAAGGACTAGGCGGCCTCAAAGATTTGTACACTTGCATTGAGGAGCTTCTTCACTTGCCATTGACACAAAAGGCACTAGCTTTGCACCAAAATGAGAAATGGGTGGAAGAATTGCTTGATGGCTCTGTTAAGTACTTGGATGTATGTGGCAACACAAGGGATGCCATCTTGACAATGAAGGAAAGCGTTCGAGTGCTTGAATCTGCGCTTCGACGAAGAATGGTCGGAGATTCGAGCCTCGAAGACAGTGTCAATGCATACGTATGCTTCAGAAAAAAGATGAAGAAGGAAGTTGTGAAGGTTTTGGCAGCATTGAAGCAAATGGATCAGAAACATGAGGTCTTTCCTTTGGATCTAGATAACCATCTTGCCGCGGTGGTGAGGGTGCTTAGAGAGTCAAGCTTGATTACAAGCTCAATTTTTCAGTCACTTCTTTTGTTTCTTTCCACACCAATTTTGAAGCCGAGGGCCAGTAGATGGTCTTTGGTTTCAATATTGATGCAAAAAGGGGTATTAGCGTGTGAGAGTTCCCAAAGCAAAAGCATGAATGAGATGGAAAGTGTGGATATTGCAATTAGCAATCTGTTTGTGGATAATTCAAGTGAAGATGTTGAGGCTCAGAAGATTGAATCTGCACAAAGAAAGTTGGAGCTTTTGGATGAAAGCATAGAAGGTCTTGAAAATGGGTTGGAGGGCTTGTTTAGGCTCTTGATCCACACTAGAGTTTCTCTCCTAAACATACTTTCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

315

Amino Acids

35.37

Weight (kDa)

7.66

Isoelectric Point (pI)

54.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 67 - 312 1.5e-88 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 672
AccII CGCG 1 cut(s) 569
AciI CCGC 3 cut(s) 207, 567, 569
AclWI GGATC 4 cut(s) 57, 528, 555, 901
AcuI CTGAAG 1 cut(s) 448
AfaI GTAC 2 cut(s) 224, 329
AfeI AGCGCT 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 672
AgsI TTSAA 9 cut(s) 110, 150, 395, 511, 655, 687, 795, 824, 875
AluBI AGCT 7 cut(s) 118, 127, 241, 275, 597, 609, 847
AluI AGCT 7 cut(s) 118, 127, 241, 275, 597, 609, 847
Alw21I GWGCWC 1 cut(s) 120
AlwI GGATC 4 cut(s) 57, 528, 555, 901
Aor51HI AGCGCT 1 cut(s) 50
AoxI GGCC 2 cut(s) 208, 663
ApeKI GCWGC 1 cut(s) 503
ArsI GACNNNNNNTTYG 2 cut(s) 429, 461
Asp700I GAANNNNTTC 1 cut(s) 381
AspLEI GCGC 2 cut(s) 51, 403
AspS9I GGNCC 1 cut(s) 663
AsuHPI GGTGA 1 cut(s) 586
AsuII TTCGAA 1 cut(s) 176
BanII GRGCYC 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 515
BccI CCATC 5 cut(s) 308, 368, 567, 666, 742
BfaI CTAG 5 cut(s) 191, 203, 272, 551, 915
BfoI RGCGCY 1 cut(s) 52
BisI GCNGC 3 cut(s) 208, 504, 567
BlsI GCNGC 3 cut(s) 209, 505, 568
BmcAI AGTACT 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 663
BmsI GCATC 2 cut(s) 346, 684
BpiI GAAGAC 1 cut(s) 444
BplI GAGNNNNNCTC 2 cut(s) 909, 941
Bpu14I TTCGAA 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 457
BsaBI GATNNNNATC 1 cut(s) 558
BsaJI CCNNGG 2 cut(s) 567, 659
BsaXI ACNNNNNCTCC 2 cut(s) 878, 908
Bsc4I CCNNNNNNNGG 1 cut(s) 672
Bse1I ACTGG 1 cut(s) 666
Bse8I GATNNNNATC 1 cut(s) 558
BseDI CCNNGG 2 cut(s) 567, 659
BseGI GGATG 3 cut(s) 340, 361, 859
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 1 cut(s) 672
BseMII CTCAG 2 cut(s) 115, 827
BseNI ACTGG 1 cut(s) 666
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 515
BsgI GTGCAG 1 cut(s) 813
Bsh1236I CGCG 1 cut(s) 569
BshFI GGCC 2 cut(s) 210, 665
BsiHKAI GWGCWC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 672
BsnI GGCC 2 cut(s) 210, 665
Bsp119I TTCGAA 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 120
Bsp1407I TGTACA 1 cut(s) 222
Bsp143I GATC 5 cut(s) 62, 83, 520, 547, 906
BspACI CCGC 3 cut(s) 207, 567, 569
BspANI GGCC 2 cut(s) 210, 665
BspCNI CTCAG 2 cut(s) 114, 826
BspFNI CGCG 1 cut(s) 569
BspPI GGATC 4 cut(s) 57, 528, 555, 901
BspQI GCTCTTC 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 176
BsrGI TGTACA 1 cut(s) 222
BsrI ACTGG 1 cut(s) 666
BssECI CCNNGG 2 cut(s) 567, 659
BssMI GATC 5 cut(s) 62, 83, 520, 547, 906
Bst4CI ACNGT 1 cut(s) 443
Bst6I CTCTTC 1 cut(s) 108
BstAUI TGTACA 1 cut(s) 222
BstBAI YACGTR 1 cut(s) 457
BstBI TTCGAA 1 cut(s) 176
BstDEI CTNAG 3 cut(s) 101, 584, 813
BstDSI CCRYGG 1 cut(s) 567
BstF5I GGATG 3 cut(s) 340, 361, 859
BstFNI CGCG 1 cut(s) 569
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 2 cut(s) 51, 403
BstKTI GATC 5 cut(s) 65, 86, 523, 550, 909
BstMBI GATC 5 cut(s) 62, 83, 520, 547, 906
BstMWI GCNNNNNNNGC 2 cut(s) 20, 124
BstSNI TACGTA 1 cut(s) 457
BstUI CGCG 1 cut(s) 569
BstV1I GCAGC 1 cut(s) 515
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 2 cut(s) 62, 547
BstYI RGATCY 2 cut(s) 62, 547
BsuRI GGCC 2 cut(s) 210, 665
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 3 cut(s) 340, 361, 859
BtsIMutI CAGTG 1 cut(s) 448
CfoI GCGC 2 cut(s) 51, 403
Cfr13I GGNCC 1 cut(s) 663
Cfr42I CCGCGG 1 cut(s) 570
Csp6I GTAC 2 cut(s) 223, 328
CviAII CATG 2 cut(s) 530, 739
CviQI GTAC 2 cut(s) 223, 328
DdeI CTNAG 3 cut(s) 101, 584, 813
DpnI GATC 5 cut(s) 64, 85, 522, 549, 908
DpnII GATC 5 cut(s) 62, 83, 520, 547, 906
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Ecl136II GAGCTC 1 cut(s) 118
Eco105I TACGTA 1 cut(s) 457
Eco24I GRGCYC 1 cut(s) 120
Eco47III AGCGCT 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 1 cut(s) 448
EcoICRI GAGCTC 1 cut(s) 118
EcoT22I ATGCAT 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 120
FaeI CATG 2 cut(s) 533, 742
FaiI YATR 8 cut(s) 74, 340, 454, 460, 531, 740, 863, 935
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 2 cut(s) 529, 738
Fnu4HI GCNGC 3 cut(s) 208, 504, 567
FokI GGATG 3 cut(s) 347, 368, 866
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 3 cut(s) 208, 504, 567
FspBI CTAG 5 cut(s) 191, 203, 272, 551, 915
GlaI GCGC 2 cut(s) 50, 402
GluI GCNGC 3 cut(s) 208, 504, 567
HaeII RGCGCY 1 cut(s) 52
HaeIII GGCC 2 cut(s) 210, 665
HhaI GCGC 2 cut(s) 51, 403
Hin1II CATG 2 cut(s) 533, 742
Hin6I GCGC 2 cut(s) 49, 401
HinP1I GCGC 2 cut(s) 49, 401
HindIII AAGCTT 1 cut(s) 595
HinfI GANTC 5 cut(s) 185, 395, 425, 590, 824
HphI GGTGA 1 cut(s) 586
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 6 cut(s) 62, 104, 422, 467, 525, 816
Hpy188III TCNNGA 4 cut(s) 364, 551, 872, 904
Hpy8I GTNNAC 1 cut(s) 225
Hpy99I CGWCG 1 cut(s) 411
HpyAV CCTTC 5 cut(s) 172, 367, 475, 487, 860
HpyCH4III ACNGT 1 cut(s) 443
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 6 cut(s) 231, 280, 452, 697, 767, 830
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 124
HpyF3I CTNAG 3 cut(s) 101, 584, 813
HpySE526I ACGT 1 cut(s) 456
Hsp92II CATG 2 cut(s) 533, 742
HspAI GCGC 2 cut(s) 49, 401
KspI CCGCGG 1 cut(s) 570
Kzo9I GATC 5 cut(s) 62, 83, 520, 547, 906
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 2 cut(s) 238, 844
LpnPI CCDG 2 cut(s) 94, 679
Lsp1109I GCAGC 1 cut(s) 515
LweI GCATC 2 cut(s) 346, 684
MaeI CTAG 5 cut(s) 191, 203, 272, 551, 915
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 1 cut(s) 621
MalI GATC 5 cut(s) 64, 85, 522, 549, 908
MboI GATC 5 cut(s) 62, 83, 520, 547, 906
MflI RGATCY 2 cut(s) 62, 547
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 7 cut(s) 105, 169, 305, 612, 648, 768, 790
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 3 cut(s) 400, 822, 864
MnlI CCTC 9 cut(s) 133, 221, 229, 443, 526, 570, 654, 802, 880
Mph1103I ATGCAT 1 cut(s) 454
MroXI GAANNNNTTC 1 cut(s) 381
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 3 cut(s) 71, 285, 457
MspA1I CMGCKG 1 cut(s) 569
MvnI CGCG 1 cut(s) 569
MwoI GCNNNNNNNGC 2 cut(s) 20, 124
NdeII GATC 5 cut(s) 62, 83, 520, 547, 906
NlaIII CATG 2 cut(s) 533, 742
NmeAIII GCCGAG 1 cut(s) 684
NmuCI GTSAC 1 cut(s) 621
NsiI ATGCAT 1 cut(s) 454
NspV TTCGAA 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 4 cut(s) 185, 395, 425, 824
PflFI GACNNNGTC 1 cut(s) 443
PflMI CCANNNNNTGG 1 cut(s) 672
PkrI GCNGC 3 cut(s) 209, 505, 568
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
Ppu21I YACGTR 1 cut(s) 457
Psp124BI GAGCTC 1 cut(s) 120
PspPI GGNCC 1 cut(s) 663
PsuI RGATCY 2 cut(s) 62, 547
PsyI GACNNNGTC 1 cut(s) 443
RsaI GTAC 2 cut(s) 224, 329
RsaNI GTAC 2 cut(s) 223, 328
RseI CAYNNNNRTG 3 cut(s) 71, 285, 457
SacI GAGCTC 1 cut(s) 120
SacII CCGCGG 1 cut(s) 570
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 3 cut(s) 208, 504, 567
Sau3AI GATC 5 cut(s) 62, 83, 520, 547, 906
Sau96I GGNCC 1 cut(s) 663
ScaI AGTACT 1 cut(s) 329
SchI GAGTC 1 cut(s) 599
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 2 cut(s) 346, 684
Sfr303I CCGCGG 1 cut(s) 570
SfuI TTCGAA 1 cut(s) 176
SgrBI CCGCGG 1 cut(s) 570
SmiMI CAYNNNNRTG 3 cut(s) 71, 285, 457
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SnaBI TACGTA 1 cut(s) 457
Sse9I AATT 7 cut(s) 105, 169, 305, 612, 648, 768, 790
SsiI CCGC 3 cut(s) 207, 567, 569
SspI AATATT 1 cut(s) 690
SspMI CTAG 5 cut(s) 191, 203, 272, 551, 915
SstI GAGCTC 1 cut(s) 120
TaaI ACNGT 1 cut(s) 443
TaiI ACGT 1 cut(s) 459
TaqI TCGA 5 cut(s) 176, 385, 406, 428, 435
TasI AATT 7 cut(s) 105, 169, 305, 612, 648, 768, 790
TatI WGTACW 2 cut(s) 222, 327
TauI GCSGC 2 cut(s) 210, 569
TfiI GAWTC 4 cut(s) 185, 395, 425, 824
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 1 cut(s) 621
TseI GCWGC 1 cut(s) 503
Tsp45I GTSAC 1 cut(s) 621
TspDTI ATGAA 7 cut(s) 20, 147, 153, 386, 491, 755, 870
TspRI CASTG 1 cut(s) 448
Tth111I GACNNNGTC 1 cut(s) 443
Van91I CCANNNNNTGG 1 cut(s) 672
XbaI TCTAGA 1 cut(s) 550
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 5 cut(s) 191, 203, 272, 551, 915
ZrmI AGTACT 1 cut(s) 329
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.