Rroxscaffold_2G00144470

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007566
Physical Location & Seq
Reverse (-)
82363519 .. 82364796
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144470.1

Sequence Viewer

Length: 948 bp
ATGATGAAAAGAGCAACAATGGCTTCTTTCTCTCCAAAACCCACAAAGCGCTACAATGTCAGATCCATTAGTATGCCCACTAGATCACATCCCACCACACTCAGAATTGAAGAAGAGCTCAACAAGCTCAAGTCTTGGGAGGCAACTTCAACATCTTCATCTCCATCAAATTGTTCGAAGGCGGATTCACTATGCAAAGGACTAGGCGGCCTCAAAGATTTGTACACTAGCATTGAGGAGCTTCTTCACTTGCCATTGACACAAAAGGCGCTAGCTTTGCACCAAAATGAGAAATGGGTGGAAGAATTGCTTGATGGCTCTGTTAAGTACCTGGATGTATGTGGCAACACAAGGGATGCCATCTTGACAATGAAGGAAAGCGTTCGAGTGCTTGAATCTGCGCTTCGACGAAGAATGGTCGGAGATTCGAGCCTCGAAGACAGTGTCAATGCATACGTAAGCTTCAGAAAAAAGATGAAGAAGGAAGTTGTGAAGGTTTTGGCAGCACTGAAGCAAATGGATCAGAAACATGTGGTCTTTCCTTTGGATCTAGATAACCATCTCGCCGCGGTGGTGAGGGTGCTTAGAGAGTCAAGTTTGATCACAAGCTCAATTTTTCAGTCACTTCTTTTGTTTCTTTCCACACCAATTTTGAAGCCTAGGGCCAGTAGATGGTCTTTGGTTTCAATATTGATGCAAAAAGGGGTATTAGCGTGTGAGAGTTCCCAAAGCAAAAGCATGAATGAGATGGAAAGTGTGGATATTGCAATTAGCAATCTGTTTGTGGATAATGCAAGTGAAGATGTTGAGGCTCAGAAGATTGAATCTGCACAAAGAAAGTTGGAGCTTTTGGATGAAAGCATAGAAGGCCTTGAAAATGGGTTGGAAGGCTTGTTTAGGCTCTTGATCCACACTAGAGTTTCTCTCCTAAACATACTTTCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

315

Amino Acids

35.29

Weight (kDa)

8.56

Isoelectric Point (pI)

54.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 67 - 312 2.1e-87 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 672
AccII CGCG 1 cut(s) 569
AciI CCGC 4 cut(s) 182, 207, 567, 569
AclWI GGATC 4 cut(s) 57, 528, 555, 901
AcuI CTGAAG 2 cut(s) 448, 530
AfaI GTAC 2 cut(s) 224, 329
AfeI AGCGCT 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 672
AflIII ACRYGT 1 cut(s) 529
AgsI TTSAA 7 cut(s) 110, 150, 395, 655, 687, 824, 875
AjnI CCWGG 1 cut(s) 330
AluBI AGCT 7 cut(s) 118, 127, 241, 275, 462, 609, 847
AluI AGCT 7 cut(s) 118, 127, 241, 275, 462, 609, 847
Alw21I GWGCWC 1 cut(s) 120
AlwI GGATC 4 cut(s) 57, 528, 555, 901
Aor51HI AGCGCT 1 cut(s) 50
AoxI GGCC 3 cut(s) 208, 663, 868
ApeKI GCWGC 1 cut(s) 503
ArsI GACNNNNNNTTYG 2 cut(s) 429, 461
Asp700I GAANNNNTTC 1 cut(s) 381
AspA2I CCTAGG 1 cut(s) 659
AspLEI GCGC 3 cut(s) 51, 271, 403
AspS9I GGNCC 1 cut(s) 663
AsuHPI GGTGA 1 cut(s) 586
AsuII TTCGAA 1 cut(s) 176
AsuNHI GCTAGC 1 cut(s) 271
AvrII CCTAGG 1 cut(s) 659
BanII GRGCYC 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 515
BccI CCATC 6 cut(s) 172, 308, 368, 567, 666, 742
BciT130I CCWGG 1 cut(s) 332
BclI TGATCA 1 cut(s) 600
BfaI CTAG 7 cut(s) 81, 203, 228, 272, 551, 660, 915
BfoI RGCGCY 2 cut(s) 52, 272
BisI GCNGC 3 cut(s) 208, 504, 567
BlnI CCTAGG 1 cut(s) 659
BlsI GCNGC 3 cut(s) 209, 505, 568
Bme1390I CCNGG 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 663
BmrFI CCNGG 1 cut(s) 332
BmsI GCATC 2 cut(s) 346, 684
BmtI GCTAGC 1 cut(s) 275
BpiI GAAGAC 1 cut(s) 444
BplI GAGNNNNNCTC 2 cut(s) 909, 941
Bpu14I TTCGAA 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 457
BsaBI GATNNNNATC 1 cut(s) 558
BsaJI CCNNGG 2 cut(s) 567, 659
Bsc4I CCNNNNNNNGG 1 cut(s) 672
Bse1I ACTGG 1 cut(s) 666
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 1 cut(s) 332
BseDI CCNNGG 2 cut(s) 567, 659
BseGI GGATG 4 cut(s) 88, 340, 361, 859
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 1 cut(s) 672
BseMII CTCAG 2 cut(s) 115, 827
BseNI ACTGG 1 cut(s) 666
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 515
BsgI GTGCAG 1 cut(s) 813
Bsh1236I CGCG 1 cut(s) 569
BshFI GGCC 3 cut(s) 210, 665, 870
BsiHKAI GWGCWC 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 672
BsnI GGCC 3 cut(s) 210, 665, 870
Bsp119I TTCGAA 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 120
Bsp1407I TGTACA 1 cut(s) 222
Bsp143I GATC 6 cut(s) 62, 83, 520, 547, 600, 906
BspACI CCGC 4 cut(s) 182, 207, 567, 569
BspANI GGCC 3 cut(s) 210, 665, 870
BspCNI CTCAG 2 cut(s) 114, 826
BspFNI CGCG 1 cut(s) 569
BspOI GCTAGC 1 cut(s) 275
BspPI GGATC 4 cut(s) 57, 528, 555, 901
BspQI GCTCTTC 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 176
BsrGI TGTACA 1 cut(s) 222
BsrI ACTGG 1 cut(s) 666
BssECI CCNNGG 2 cut(s) 567, 659
BssMI GATC 6 cut(s) 62, 83, 520, 547, 600, 906
BssT1I CCWWGG 1 cut(s) 659
Bst2UI CCWGG 1 cut(s) 332
Bst4CI ACNGT 1 cut(s) 443
Bst6I CTCTTC 1 cut(s) 108
BstAUI TGTACA 1 cut(s) 222
BstBAI YACGTR 1 cut(s) 457
BstBI TTCGAA 1 cut(s) 176
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 3 cut(s) 101, 584, 813
BstDSI CCRYGG 1 cut(s) 567
BstF5I GGATG 4 cut(s) 88, 340, 361, 859
BstFNI CGCG 1 cut(s) 569
BstH2I RGCGCY 2 cut(s) 52, 272
BstHHI GCGC 3 cut(s) 51, 271, 403
BstKTI GATC 6 cut(s) 65, 86, 523, 550, 603, 909
BstMBI GATC 6 cut(s) 62, 83, 520, 547, 600, 906
BstMWI GCNNNNNNNGC 4 cut(s) 20, 124, 277, 867
BstNI CCWGG 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 1 cut(s) 330
BstSNI TACGTA 1 cut(s) 457
BstUI CGCG 1 cut(s) 569
BstV1I GCAGC 1 cut(s) 515
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 2 cut(s) 62, 547
BstYI RGATCY 2 cut(s) 62, 547
BsuRI GGCC 3 cut(s) 210, 665, 870
BtgI CCRYGG 1 cut(s) 567
BtsCI GGATG 4 cut(s) 88, 340, 361, 859
BtsIMutI CAGTG 2 cut(s) 448, 506
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 3 cut(s) 51, 271, 403
Cfr13I GGNCC 1 cut(s) 663
Cfr42I CCGCGG 1 cut(s) 570
Csp6I GTAC 2 cut(s) 223, 328
CviAII CATG 2 cut(s) 530, 739
CviQI GTAC 2 cut(s) 223, 328
DdeI CTNAG 3 cut(s) 101, 584, 813
DpnI GATC 6 cut(s) 64, 85, 522, 549, 602, 908
DpnII GATC 6 cut(s) 62, 83, 520, 547, 600, 906
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
EciI GGCGGA 1 cut(s) 197
Ecl136II GAGCTC 1 cut(s) 118
Eco105I TACGTA 1 cut(s) 457
Eco130I CCWWGG 1 cut(s) 659
Eco147I AGGCCT 1 cut(s) 870
Eco24I GRGCYC 1 cut(s) 120
Eco47III AGCGCT 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 2 cut(s) 448, 530
EcoICRI GAGCTC 1 cut(s) 118
EcoRII CCWGG 1 cut(s) 330
EcoT14I CCWWGG 1 cut(s) 659
EcoT22I ATGCAT 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 659
FaeI CATG 2 cut(s) 533, 742
FaiI YATR 8 cut(s) 74, 193, 340, 454, 531, 740, 863, 935
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 2 cut(s) 529, 738
FbaI TGATCA 1 cut(s) 600
Fnu4HI GCNGC 3 cut(s) 208, 504, 567
FokI GGATG 4 cut(s) 75, 347, 368, 866
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 3 cut(s) 208, 504, 567
FspBI CTAG 7 cut(s) 81, 203, 228, 272, 551, 660, 915
GlaI GCGC 3 cut(s) 50, 270, 402
GluI GCNGC 3 cut(s) 208, 504, 567
HaeII RGCGCY 2 cut(s) 52, 272
HaeIII GGCC 3 cut(s) 210, 665, 870
HhaI GCGC 3 cut(s) 51, 271, 403
Hin1II CATG 2 cut(s) 533, 742
Hin6I GCGC 3 cut(s) 49, 269, 401
HinP1I GCGC 3 cut(s) 49, 269, 401
HindIII AAGCTT 1 cut(s) 460
HinfI GANTC 5 cut(s) 185, 395, 425, 590, 824
HphI GGTGA 1 cut(s) 586
Hpy166II GTNNAC 1 cut(s) 225
Hpy188I TCNGA 6 cut(s) 62, 104, 422, 467, 525, 816
Hpy188III TCNNGA 3 cut(s) 364, 551, 904
Hpy8I GTNNAC 1 cut(s) 225
Hpy99I CGWCG 1 cut(s) 411
HpyAV CCTTC 6 cut(s) 172, 367, 475, 487, 860, 881
HpyCH4III ACNGT 1 cut(s) 443
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 7 cut(s) 195, 280, 452, 697, 767, 794, 830
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 124, 277, 867
HpyF3I CTNAG 3 cut(s) 101, 584, 813
HpySE526I ACGT 1 cut(s) 456
Hsp92II CATG 2 cut(s) 533, 742
HspAI GCGC 3 cut(s) 49, 269, 401
Ksp22I TGATCA 1 cut(s) 600
KspI CCGCGG 1 cut(s) 570
Kzo9I GATC 6 cut(s) 62, 83, 520, 547, 600, 906
LguI GCTCTTC 1 cut(s) 108
LmnI GCTCC 2 cut(s) 238, 844
LpnPI CCDG 3 cut(s) 317, 344, 679
Lsp1109I GCAGC 1 cut(s) 515
LweI GCATC 2 cut(s) 346, 684
MaeI CTAG 7 cut(s) 81, 203, 228, 272, 551, 660, 915
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 1 cut(s) 621
MalI GATC 6 cut(s) 64, 85, 522, 549, 602, 908
MboI GATC 6 cut(s) 62, 83, 520, 547, 600, 906
MflI RGATCY 2 cut(s) 62, 547
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 6 cut(s) 105, 169, 305, 612, 648, 768
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 3 cut(s) 400, 822, 864
MnlI CCTC 6 cut(s) 133, 221, 229, 443, 570, 802
Mph1103I ATGCAT 1 cut(s) 454
MroXI GAANNNNTTC 1 cut(s) 381
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 2 cut(s) 71, 285
MspA1I CMGCKG 1 cut(s) 569
MspR9I CCNGG 1 cut(s) 332
MvaI CCWGG 1 cut(s) 332
MvnI CGCG 1 cut(s) 569
MwoI GCNNNNNNNGC 4 cut(s) 20, 124, 277, 867
NdeII GATC 6 cut(s) 62, 83, 520, 547, 600, 906
NheI GCTAGC 1 cut(s) 271
NlaIII CATG 2 cut(s) 533, 742
NmuCI GTSAC 1 cut(s) 621
NsiI ATGCAT 1 cut(s) 454
NspI RCATGY 1 cut(s) 533
NspV TTCGAA 1 cut(s) 176
PceI AGGCCT 1 cut(s) 870
PciI ACATGT 1 cut(s) 529
PciSI GCTCTTC 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 4 cut(s) 185, 395, 425, 824
PflFI GACNNNGTC 1 cut(s) 443
PflMI CCANNNNNTGG 1 cut(s) 672
PkrI GCNGC 3 cut(s) 209, 505, 568
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
Ppu21I YACGTR 1 cut(s) 457
PscI ACATGT 1 cut(s) 529
Psp124BI GAGCTC 1 cut(s) 120
Psp6I CCWGG 1 cut(s) 330
PspGI CCWGG 1 cut(s) 330
PspPI GGNCC 1 cut(s) 663
PsuI RGATCY 2 cut(s) 62, 547
PsyI GACNNNGTC 1 cut(s) 443
RsaI GTAC 2 cut(s) 224, 329
RsaNI GTAC 2 cut(s) 223, 328
RseI CAYNNNNRTG 2 cut(s) 71, 285
SacI GAGCTC 1 cut(s) 120
SacII CCGCGG 1 cut(s) 570
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 3 cut(s) 208, 504, 567
Sau3AI GATC 6 cut(s) 62, 83, 520, 547, 600, 906
Sau96I GGNCC 1 cut(s) 663
SchI GAGTC 1 cut(s) 599
ScrFI CCNGG 1 cut(s) 332
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 2 cut(s) 346, 684
Sfr303I CCGCGG 1 cut(s) 570
SfuI TTCGAA 1 cut(s) 176
SgrBI CCGCGG 1 cut(s) 570
SmiMI CAYNNNNRTG 2 cut(s) 71, 285
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
SnaBI TACGTA 1 cut(s) 457
Sse9I AATT 6 cut(s) 105, 169, 305, 612, 648, 768
SseBI AGGCCT 1 cut(s) 870
SsiI CCGC 4 cut(s) 182, 207, 567, 569
SspI AATATT 1 cut(s) 690
SspMI CTAG 7 cut(s) 81, 203, 228, 272, 551, 660, 915
SstI GAGCTC 1 cut(s) 120
StuI AGGCCT 1 cut(s) 870
StyD4I CCNGG 1 cut(s) 330
StyI CCWWGG 1 cut(s) 659
TaaI ACNGT 1 cut(s) 443
TaiI ACGT 1 cut(s) 459
TaqI TCGA 5 cut(s) 176, 385, 406, 428, 435
TasI AATT 6 cut(s) 105, 169, 305, 612, 648, 768
TatI WGTACW 1 cut(s) 222
TauI GCSGC 2 cut(s) 210, 569
TfiI GAWTC 4 cut(s) 185, 395, 425, 824
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 2 cut(s) 448, 513
TseFI GTSAC 1 cut(s) 621
TseI GCWGC 1 cut(s) 503
Tsp45I GTSAC 1 cut(s) 621
TspDTI ATGAA 6 cut(s) 20, 147, 386, 491, 755, 870
TspRI CASTG 2 cut(s) 448, 513
Tth111I GACNNNGTC 1 cut(s) 443
Van91I CCANNNNNTGG 1 cut(s) 672
XbaI TCTAGA 1 cut(s) 550
XceI RCATGY 1 cut(s) 533
XmaJI CCTAGG 1 cut(s) 659
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 7 cut(s) 81, 203, 228, 272, 551, 660, 915
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.