Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007566

Physical Location & Seq

Genomic Coordinates Forward (+)

10382859 .. 10398863

Gene Structure 16005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG115800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGACAGAGGTGAAGCAGATGAGGCATGACATCGCTTCACTCCTTCAGAAAGGTCAAGAAGTCACTGCTCGTATCTTGGCTCTTCTGCCAATTGGTCGTGGAAAGACTTTTAATCATCGAAAAGCAAAGGAAGGACCAAAAACTTTTGTTAGTGGTGCTACATTACCTCTGCAATCTGTTCAGTTGGACAAGTTCGAGAAAACAAGTGGTGGAGAAAGGGGAAATATGCATTATCAAGACGCACCATCAGCCGTGGAAGCAGCTGTGATATTTGCTAGTGAGGCAATGTCTGTTGCACAAGCTGCTGCAATTCTTGCCAATCAGGCATCATCTCAAGCACCTCATTGTGTTGATACTGTCGGTGGTCATCCTAGTAGTGGTAGGCCCTCATCCGATCACGACGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 ko04144 map00592 map01100 map01110 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

135

Amino Acids

14.25

Weight (kDa)

7.96

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35720
fragaria_vesca	FvH4_1g10720 FvH4_1g10730
malus_domestica	MD02G1121200.v1.1 MD15G1235000.v1.1
prunus_persica	Prupe.7G178100_v2.0.a1
pyrus_communis	pycom15g20920
rosa_chinensis	RchiOBHm_Chr2g0097881 RchiOBHm_Chr2g0097891
rosa_laevigata	RLG00000016743
rosa_multiflora	Rmu_co8303561.1_g000001 Rmu_sc0009572.1_g000010
rosa_roxburghii	Rroxscaffold_2G00144470
rosa_rugosa	Rorug02G0069000
rosa_samantha	Rh2AG115700 Rh2AG115800 Rh2BG118600 Rh2BG118700 Rh2CG120100 Rh2CG120300 Rh2DG119900 Rh2DG120000
rosa_wichuraiana	Rw2G009050 Rw2G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	29
AfiI	CCNNNNNNNGG	1 cut(s)	377
AluBI	AGCT	2 cut(s)	263, 302
AluI	AGCT	2 cut(s)	263, 302
AoxI	GGCC	1 cut(s)	383
ApeKI	GCWGC	3 cut(s)	260, 302, 305
AspS9I	GGNCC	2 cut(s)	134, 384
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	272, 289, 292
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	1 cut(s)	236
BfaI	CTAG	2 cut(s)	276, 372
BglI	GCCNNNNNGGC	1 cut(s)	323
BisI	GCNGC	3 cut(s)	261, 303, 306
BlsI	GCNGC	3 cut(s)	262, 304, 307
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	2 cut(s)	134, 384
BmsI	GCATC	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	2 cut(s)	367, 389
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMI	GCAATG	1 cut(s)	291
BseXI	GCAGC	3 cut(s)	272, 289, 292
BshFI	GGCC	1 cut(s)	385
BslI	CCNNNNNNNGG	1 cut(s)	377
BsnI	GGCC	1 cut(s)	385
Bsp143I	GATC	1 cut(s)	394
BspANI	GGCC	1 cut(s)	385
BspQI	GCTCTTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	291
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	394
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	87
BstAPI	GCANNNNNTGC	2 cut(s)	302, 314
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	2 cut(s)	367, 389
BstKTI	GATC	1 cut(s)	397
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	7 cut(s)	22, 248, 257, 281, 302, 314, 323
BstV1I	GCAGC	3 cut(s)	272, 289, 292
BsuRI	GGCC	1 cut(s)	385
BtgI	CCRYGG	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	367, 389
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	63
Cfr13I	GGNCC	2 cut(s)	134, 384
CseI	GACGC	1 cut(s)	248
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	5 cut(s)	80, 251, 263, 302, 385
CviKI_1	RGCY	5 cut(s)	80, 251, 263, 302, 385
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	29
EcoO109I	RGGNCCY	1 cut(s)	384
EcoT22I	ATGCAT	1 cut(s)	231
FaeI	CATG	1 cut(s)	29
FaiI	YATR	2 cut(s)	27, 227
FatI	CATG	1 cut(s)	25
Fnu4HI	GCNGC	3 cut(s)	261, 303, 306
FokI	GGATG	2 cut(s)	354, 376
Fsp4HI	GCNGC	3 cut(s)	261, 303, 306
FspBI	CTAG	2 cut(s)	276, 372
GluI	GCNGC	3 cut(s)	261, 303, 306
HaeIII	GGCC	1 cut(s)	385
HgaI	GACGC	1 cut(s)	248
Hin1II	CATG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	2 cut(s)	48, 394
Hpy188III	TCNNGA	4 cut(s)	56, 196, 236, 398
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	2 cut(s)	53, 125
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	4 cut(s)	172, 229, 296, 308
HpyF10VI	GCNNNNNNNGC	7 cut(s)	22, 248, 257, 281, 302, 314, 323
Hsp92II	CATG	1 cut(s)	29
Kzo9I	GATC	1 cut(s)	394
LguI	GCTCTTC	1 cut(s)	87
LpnPI	CCDG	1 cut(s)	308
Lsp1109I	GCAGC	3 cut(s)	272, 289, 292
LweI	GCATC	1 cut(s)	335
MaeI	CTAG	2 cut(s)	276, 372
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	1 cut(s)	74
MfeI	CAATTG	1 cut(s)	90
MluCI	AATT	2 cut(s)	90, 309
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	5 cut(s)	15, 177, 274, 351, 397
Mph1103I	ATGCAT	1 cut(s)	231
MseI	TTAA	2 cut(s)	111, 406
MspA1I	CMGCKG	1 cut(s)	263
MunI	CAATTG	1 cut(s)	90
MwoI	GCNNNNNNNGC	7 cut(s)	22, 248, 257, 281, 302, 314, 323
NdeII	GATC	1 cut(s)	394
NlaIII	CATG	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	231
PciSI	GCTCTTC	1 cut(s)	87
PkrI	GCNGC	3 cut(s)	262, 304, 307
PspPI	GGNCC	2 cut(s)	134, 384
PvuII	CAGCTG	1 cut(s)	263
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	111, 406
SatI	GCNGC	3 cut(s)	261, 303, 306
Sau3AI	GATC	1 cut(s)	394
Sau96I	GGNCC	2 cut(s)	134, 384
SetI	ASST	6 cut(s)	12, 55, 169, 265, 304, 343
SfaNI	GCATC	1 cut(s)	335
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	2 cut(s)	90, 309
SspMI	CTAG	2 cut(s)	276, 372
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	2 cut(s)	118, 195
TasI	AATT	2 cut(s)	90, 309
Tru1I	TTAA	2 cut(s)	111, 406
Tru9I	TTAA	2 cut(s)	111, 406
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	3 cut(s)	260, 302, 305
Tsp45I	GTSAC	1 cut(s)	61
TspRI	CASTG	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	134
XspI	CTAG	2 cut(s)	276, 372
Zsp2I	ATGCAT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.