Rh2AG115700

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0007566
Physical Location & Seq
Forward (+)
10381144 .. 10382073
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG115700.1

Sequence Viewer

Length: 930 bp
ATGGCTTCTTTCTCTCCAAAACCCACAAAGCGCTACAATGTCAGATCCATTAGTATGCCCACTAGATCACATCCCACCACACTCAGAATTGAAGAAGAGCTCAACAAGCTCAAGTCTTGGGAGGCAACTTCAACATCTTCATCTTCATCAAATTGTTCGAAGGCAGATTCACTACGCAAAGGACTAGGCGGCCTCAAAGATTTGTACACTTGCATTGAGGAGCTTCTTCACTTGCCATTGACACAAAAGGCACTAGCTTTGCACCAAAATGAGAAATGGGTGGAAGAATTGCTTGATGGCTCTGTTAAGTACTTGGATGTATGTGGCAACACAAGGGATGCCATCTTGACAATGAAGGAAAGCGTTCGAGTGCTTGAATCTGCGCTTCGACGAAGAATGGTCGGAGATTCGAGCCTCGAAGACGGTGTCAATGCATACGTATGCTTCAGAAAAAAGATGAAGAAGGAAGTTGTGAAGGTTTTGGCAGCATTGAAGCAAATGGATCAGAAACATGAGGTCTTTCCTTTGGATCTAGATAACCATCTTGCCGCGGTGGTGAGGGTGCTTAGAGAGTCAAGCTTGATCACAAGCTCAATTTTTCAGTCACTTCTTTTGTTTCTTTCCACACCAATTTTGAAGCCGAGGGCCAGTAGATGGTCTTTGGTTTCAATATTGATGCAAAAAGGGATATTAGCGTGTGAGAGTTCCCAAAGCAAAAGCATGAATGAGATGGAAAGTGTGGATATTGCAATTAGCAATCTGTTTGTGGATAATGCAAGTGAAGATGTTGAGGCTCAGAAGATTGAATCTGCACAAAGAAAGTTGGAGCTTTTGGAAGAAAGCATAGAAGGTCTTGAAAATGGGTTGGAGGGCTTGTTTAGGCTCTTGATCCACACTAGGGTTTCTCTCCTAAACATACTTTCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

309

Amino Acids

34.67

Weight (kDa)

7.66

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 61 - 306 1.1e-88 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 654
AccII CGCG 1 cut(s) 551
AciI CCGC 3 cut(s) 189, 549, 551
AclWI GGATC 4 cut(s) 39, 510, 537, 883
AcuI CTGAAG 1 cut(s) 430
AfaI GTAC 2 cut(s) 206, 311
AfeI AGCGCT 1 cut(s) 32
AfiI CCNNNNNNNGG 2 cut(s) 654, 898
AgsI TTSAA 8 cut(s) 92, 132, 377, 493, 637, 669, 806, 857
AluBI AGCT 7 cut(s) 100, 109, 223, 257, 579, 591, 829
AluI AGCT 7 cut(s) 100, 109, 223, 257, 579, 591, 829
Alw21I GWGCWC 1 cut(s) 102
AlwI GGATC 4 cut(s) 39, 510, 537, 883
Aor51HI AGCGCT 1 cut(s) 32
AoxI GGCC 2 cut(s) 190, 645
ApeKI GCWGC 1 cut(s) 485
ArsI GACNNNNNNTTYG 2 cut(s) 411, 443
Asp700I GAANNNNTTC 1 cut(s) 363
AspLEI GCGC 2 cut(s) 33, 385
AspS9I GGNCC 1 cut(s) 645
AsuHPI GGTGA 1 cut(s) 568
AsuII TTCGAA 1 cut(s) 158
BanII GRGCYC 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 426
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 1 cut(s) 497
BccI CCATC 5 cut(s) 290, 350, 549, 648, 724
BclI TGATCA 1 cut(s) 582
BfaI CTAG 5 cut(s) 63, 185, 254, 533, 897
BfoI RGCGCY 1 cut(s) 34
BisI GCNGC 3 cut(s) 190, 486, 549
BlsI GCNGC 3 cut(s) 191, 487, 550
BmcAI AGTACT 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 645
BmsI GCATC 2 cut(s) 328, 666
BpiI GAAGAC 1 cut(s) 426
Bpu14I TTCGAA 1 cut(s) 158
BpuEI CTTGAG 1 cut(s) 95
BsaAI YACGTR 1 cut(s) 439
BsaBI GATNNNNATC 1 cut(s) 540
BsaJI CCNNGG 2 cut(s) 549, 641
BsaXI ACNNNNNCTCC 2 cut(s) 860, 890
Bsc4I CCNNNNNNNGG 2 cut(s) 654, 898
Bse1I ACTGG 1 cut(s) 648
Bse8I GATNNNNATC 1 cut(s) 540
BseDI CCNNGG 2 cut(s) 549, 641
BseGI GGATG 3 cut(s) 70, 322, 343
BseJI GATNNNNATC 1 cut(s) 540
BseLI CCNNNNNNNGG 2 cut(s) 654, 898
BseMII CTCAG 2 cut(s) 97, 809
BseNI ACTGG 1 cut(s) 648
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 497
BsgI GTGCAG 1 cut(s) 795
Bsh1236I CGCG 1 cut(s) 551
BshFI GGCC 2 cut(s) 192, 647
BsiHKAI GWGCWC 1 cut(s) 102
BslI CCNNNNNNNGG 2 cut(s) 654, 898
BsnI GGCC 2 cut(s) 192, 647
Bsp119I TTCGAA 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 102
Bsp1407I TGTACA 1 cut(s) 204
Bsp143I GATC 6 cut(s) 44, 65, 502, 529, 582, 888
BspACI CCGC 3 cut(s) 189, 549, 551
BspANI GGCC 2 cut(s) 192, 647
BspCNI CTCAG 2 cut(s) 96, 808
BspFNI CGCG 1 cut(s) 551
BspPI GGATC 4 cut(s) 39, 510, 537, 883
BspQI GCTCTTC 1 cut(s) 90
BspT104I TTCGAA 1 cut(s) 158
BsrGI TGTACA 1 cut(s) 204
BsrI ACTGG 1 cut(s) 648
BssECI CCNNGG 2 cut(s) 549, 641
BssMI GATC 6 cut(s) 44, 65, 502, 529, 582, 888
Bst4CI ACNGT 1 cut(s) 425
Bst6I CTCTTC 1 cut(s) 90
BstAUI TGTACA 1 cut(s) 204
BstBAI YACGTR 1 cut(s) 439
BstBI TTCGAA 1 cut(s) 158
BstDEI CTNAG 3 cut(s) 83, 566, 795
BstDSI CCRYGG 1 cut(s) 549
BstF5I GGATG 3 cut(s) 70, 322, 343
BstFNI CGCG 1 cut(s) 551
BstH2I RGCGCY 1 cut(s) 34
BstHHI GCGC 2 cut(s) 33, 385
BstKTI GATC 6 cut(s) 47, 68, 505, 532, 585, 891
BstMBI GATC 6 cut(s) 44, 65, 502, 529, 582, 888
BstMWI GCNNNNNNNGC 1 cut(s) 106
BstSNI TACGTA 1 cut(s) 439
BstUI CGCG 1 cut(s) 551
BstV1I GCAGC 1 cut(s) 497
BstV2I GAAGAC 1 cut(s) 426
BstX2I RGATCY 2 cut(s) 44, 529
BstYI RGATCY 2 cut(s) 44, 529
BsuRI GGCC 2 cut(s) 192, 647
BtgI CCRYGG 1 cut(s) 549
BtsCI GGATG 3 cut(s) 70, 322, 343
CfoI GCGC 2 cut(s) 33, 385
Cfr13I GGNCC 1 cut(s) 645
Cfr42I CCGCGG 1 cut(s) 552
Csp6I GTAC 2 cut(s) 205, 310
CviAII CATG 2 cut(s) 512, 721
CviQI GTAC 2 cut(s) 205, 310
DdeI CTNAG 3 cut(s) 83, 566, 795
DpnI GATC 6 cut(s) 46, 67, 504, 531, 584, 890
DpnII GATC 6 cut(s) 44, 65, 502, 529, 582, 888
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Ecl136II GAGCTC 1 cut(s) 100
Eco105I TACGTA 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 102
Eco47III AGCGCT 1 cut(s) 32
Eco53kI GAGCTC 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 430
EcoICRI GAGCTC 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 2 cut(s) 515, 724
FaiI YATR 8 cut(s) 56, 322, 436, 442, 513, 722, 845, 917
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FatI CATG 2 cut(s) 511, 720
FbaI TGATCA 1 cut(s) 582
Fnu4HI GCNGC 3 cut(s) 190, 486, 549
FokI GGATG 3 cut(s) 57, 329, 350
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 3 cut(s) 190, 486, 549
FspBI CTAG 5 cut(s) 63, 185, 254, 533, 897
GlaI GCGC 2 cut(s) 32, 384
GluI GCNGC 3 cut(s) 190, 486, 549
HaeII RGCGCY 1 cut(s) 34
HaeIII GGCC 2 cut(s) 192, 647
HhaI GCGC 2 cut(s) 33, 385
Hin1II CATG 2 cut(s) 515, 724
Hin6I GCGC 2 cut(s) 31, 383
HinP1I GCGC 2 cut(s) 31, 383
HindIII AAGCTT 1 cut(s) 577
HinfI GANTC 5 cut(s) 167, 377, 407, 572, 806
HphI GGTGA 1 cut(s) 568
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 6 cut(s) 44, 86, 404, 449, 507, 798
Hpy188III TCNNGA 4 cut(s) 346, 533, 854, 886
Hpy8I GTNNAC 1 cut(s) 207
Hpy99I CGWCG 1 cut(s) 393
HpyAV CCTTC 5 cut(s) 154, 349, 457, 469, 842
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 7 cut(s) 213, 262, 434, 679, 749, 776, 812
HpyF10VI GCNNNNNNNGC 1 cut(s) 106
HpyF3I CTNAG 3 cut(s) 83, 566, 795
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 2 cut(s) 515, 724
HspAI GCGC 2 cut(s) 31, 383
Ksp22I TGATCA 1 cut(s) 582
KspI CCGCGG 1 cut(s) 552
Kzo9I GATC 6 cut(s) 44, 65, 502, 529, 582, 888
LguI GCTCTTC 1 cut(s) 90
LmnI GCTCC 2 cut(s) 220, 826
LpnPI CCDG 1 cut(s) 661
Lsp1109I GCAGC 1 cut(s) 497
LweI GCATC 2 cut(s) 328, 666
MaeI CTAG 5 cut(s) 63, 185, 254, 533, 897
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 1 cut(s) 603
MalI GATC 6 cut(s) 46, 67, 504, 531, 584, 890
MboI GATC 6 cut(s) 44, 65, 502, 529, 582, 888
MflI RGATCY 2 cut(s) 44, 529
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 6 cut(s) 87, 151, 287, 594, 630, 750
MlyI GAGTC 1 cut(s) 581
MmeI TCCRAC 3 cut(s) 382, 804, 846
MnlI CCTC 9 cut(s) 115, 203, 211, 425, 508, 552, 636, 784, 862
Mph1103I ATGCAT 1 cut(s) 436
MroXI GAANNNNTTC 1 cut(s) 363
MseI TTAA 1 cut(s) 306
MslI CAYNNNNRTG 3 cut(s) 53, 267, 439
MspA1I CMGCKG 1 cut(s) 551
MvnI CGCG 1 cut(s) 551
MwoI GCNNNNNNNGC 1 cut(s) 106
NdeII GATC 6 cut(s) 44, 65, 502, 529, 582, 888
NlaIII CATG 2 cut(s) 515, 724
NmeAIII GCCGAG 1 cut(s) 666
NmuCI GTSAC 1 cut(s) 603
NsiI ATGCAT 1 cut(s) 436
NspV TTCGAA 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 363
PfeI GAWTC 4 cut(s) 167, 377, 407, 806
PflFI GACNNNGTC 1 cut(s) 425
PflMI CCANNNNNTGG 1 cut(s) 654
PkrI GCNGC 3 cut(s) 191, 487, 550
PleI GAGTC 1 cut(s) 580
PpsI GAGTC 1 cut(s) 580
Ppu21I YACGTR 1 cut(s) 439
Psp124BI GAGCTC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 645
PsuI RGATCY 2 cut(s) 44, 529
PsyI GACNNNGTC 1 cut(s) 425
RsaI GTAC 2 cut(s) 206, 311
RsaNI GTAC 2 cut(s) 205, 310
RseI CAYNNNNRTG 3 cut(s) 53, 267, 439
SacI GAGCTC 1 cut(s) 102
SacII CCGCGG 1 cut(s) 552
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 3 cut(s) 190, 486, 549
Sau3AI GATC 6 cut(s) 44, 65, 502, 529, 582, 888
Sau96I GGNCC 1 cut(s) 645
ScaI AGTACT 1 cut(s) 311
SchI GAGTC 1 cut(s) 581
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 2 cut(s) 328, 666
Sfr303I CCGCGG 1 cut(s) 552
SfuI TTCGAA 1 cut(s) 158
SgrBI CCGCGG 1 cut(s) 552
SmiMI CAYNNNNRTG 3 cut(s) 53, 267, 439
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
SnaBI TACGTA 1 cut(s) 439
Sse9I AATT 6 cut(s) 87, 151, 287, 594, 630, 750
SsiI CCGC 3 cut(s) 189, 549, 551
SspI AATATT 1 cut(s) 672
SspMI CTAG 5 cut(s) 63, 185, 254, 533, 897
SstI GAGCTC 1 cut(s) 102
TaaI ACNGT 1 cut(s) 425
TaiI ACGT 1 cut(s) 441
TaqI TCGA 5 cut(s) 158, 367, 388, 410, 417
TasI AATT 6 cut(s) 87, 151, 287, 594, 630, 750
TatI WGTACW 2 cut(s) 204, 309
TauI GCSGC 2 cut(s) 192, 551
TfiI GAWTC 4 cut(s) 167, 377, 407, 806
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TseFI GTSAC 1 cut(s) 603
TseI GCWGC 1 cut(s) 485
Tsp45I GTSAC 1 cut(s) 603
TspDTI ATGAA 5 cut(s) 129, 135, 368, 473, 737
Tth111I GACNNNGTC 1 cut(s) 425
Van91I CCANNNNNTGG 1 cut(s) 654
XbaI TCTAGA 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 363
XspI CTAG 5 cut(s) 63, 185, 254, 533, 897
ZrmI AGTACT 1 cut(s) 311
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.