Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009572.1

Orthogroup ID

OG0007566

Physical Location & Seq

Genomic Coordinates Reverse (-)

46873 .. 49980

Gene Structure 3108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009572.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1758 bp

atggcttctttctctccaaaacccacaaagcgctacaatgtcagatccattagtatgcccactagatcacatcccaccacactcagaattgaagaagagctcaacaagctcaagtcttgggaggcaacttcaacatcttcatcttcatcaaattgttcgaaggcagattcactacgcaaaggactaggcggcctcaaagatttgtacacttgcattgaggagcttcttcacttgccattgacacaaaaggcactagctttgcaccaaaatgagaaatgggtggaagaattgcttgatggctctgtcaagtacttggatgtatgtggcaacacaagggatgccatcttgacaatgaaggaaagcgttcgagtgcttgaatctgcgcttcgacgaagaatggtcggagattcgagcctcgaagacggtgtcaatgcatacgtatgcttcagaaaaaagatgaagaaggaagttgtgaaggttttggcagcattgaagcaaatggatcagaaacatgaggtctttcctttggatctagataaccatcttgccgcggtggtgagggtgcttagagagtcaagcttgatcacaagctcaatttttcagtcacttcttttgtttctttccacaccaattttgaagccgagggccagtagatggtctttggtttcaatattgatgcaaaaaggggtattagcgtgtgagagttcccaaagcaaaagcatgaatgagatggaaagtgtggatattgcaattagcaatctgtttgtggataatgcaagtgaagatgttgaggctcagaagattgaatctgcacaaagaaagttggagcttttggatgaaagcatagaaggtcttgaaaatggtaaagttgcattaaatatggtattggctagaataaaggttgtgttgaacgagagaatgacagaggtgaagcagatgaggcatgacatcgcttcactccttcagaaaggtcaagaagtcactgctcgtatcttgattgaacatttgacaagagaccagaattctttggctgcctatgaactcattaggctcttctgccaattggtcgtcgaaaaacttttaatcattgaaaagcaaaggcaatgtccgcctgatttgaaagaagggattgctagtttgatctttgcagccccaaggtgctgcgagattccagaactaatgacagtcaggaatatttttgagaagaaatatggaagagattttgtatctgcagctagtgatctaagacctgagtgtggagtgaatggaaagatgattgagaatctctctatcaaaacccccagtagtgaagtgaagttgaaactcatgaaggaaatagccaatgagtatagggttgaatgggatgcaacaaaatatgaaaaggagtttttcaagcctacagaagagcttatagaaggaccaaaaacttttgttagtggtgctacattacctctgcaatctgttcagttgaacaagttcgagaaaacaagtggtggagaaaggggaaatatgcattatcaagacgcaccatcagccgtggaagcagctgtgatatttgctagtgaggcaatgtctgctgcacaagctgctgcaattcttgccaatcaggcatcatctcaagcacctcattgtgttgatactgtgtccaagactcgaaacatcgatgatcatgaagaattagctgttgatgaggaagagacgcttcttagtgatgatgaaatttttgcacgctttcaggcgctgaagttgcacagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF241

Protein Analysis

585

Amino Acids

65.58

Weight (kDa)

6.01

Isoelectric Point (pI)

48.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35720
fragaria_vesca	FvH4_1g10720 FvH4_1g10730
malus_domestica	MD02G1121200.v1.1 MD15G1235000.v1.1
prunus_persica	Prupe.7G178100_v2.0.a1
pyrus_communis	pycom15g20920
rosa_chinensis	RchiOBHm_Chr2g0097881 RchiOBHm_Chr2g0097891
rosa_laevigata	RLG00000016743
rosa_multiflora	Rmu_co8303561.1_g000001 Rmu_sc0009572.1_g000010
rosa_roxburghii	Rroxscaffold_2G00144470
rosa_rugosa	Rorug02G0069000
rosa_samantha	Rh2AG115700 Rh2AG115800 Rh2BG118600 Rh2BG118700 Rh2CG120100 Rh2CG120300 Rh2DG119900 Rh2DG120000
rosa_wichuraiana	Rw2G009050 Rw2G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	654
AccII	CGCG	1 cut(s)	551
AciI	CCGC	4 cut(s)	189, 549, 551, 1109
AclWI	GGATC	3 cut(s)	39, 510, 537
AcsI	RAATTY	2 cut(s)	1021, 1719
AcuI	CTGAAG	2 cut(s)	430, 947
AfaI	GTAC	2 cut(s)	206, 311
AfeI	AGCGCT	1 cut(s)	32
AfiI	CCNNNNNNNGG	2 cut(s)	654, 1256
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	1008, 1691
AlwI	GGATC	3 cut(s)	39, 510, 537
AlwNI	CAGNNNCTG	1 cut(s)	1741
Aor51HI	AGCGCT	1 cut(s)	32
AoxI	GGCC	2 cut(s)	190, 645
ApeKI	GCWGC	9 cut(s)	485, 1031, 1148, 1161, 1232, 1544, 1577, 1586, 1589
ApoI	RAATTY	2 cut(s)	1021, 1719
ArsI	GACNNNNNNTTYG	4 cut(s)	411, 443, 1090, 1122
Asp700I	GAANNNNTTC	2 cut(s)	363, 1475
AspLEI	GCGC	3 cut(s)	33, 385, 1741
AspS9I	GGNCC	2 cut(s)	645, 1418
AsuHPI	GGTGA	2 cut(s)	568, 940
AsuII	TTCGAA	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	1418
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	9 cut(s)	497, 1018, 1148, 1160, 1244, 1556, 1564, 1573, 1576
BccI	CCATC	6 cut(s)	290, 350, 549, 648, 724, 1537
BceAI	ACGGC	1 cut(s)	1520
BclI	TGATCA	2 cut(s)	582, 1666
BcoDI	GTCTC	2 cut(s)	1008, 1691
BfaI	CTAG	8 cut(s)	63, 185, 254, 533, 891, 1134, 1236, 1560
BfmI	CTRYAG	2 cut(s)	1230, 1398
BfoI	RGCGCY	2 cut(s)	34, 1742
BglI	GCCNNNNNGGC	1 cut(s)	1607
BmcAI	AGTACT	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	1418
BmgT120I	GGNCC	2 cut(s)	645, 1418
BmrI	ACTGGG	1 cut(s)	1296
BmsI	GCATC	4 cut(s)	328, 666, 1354, 1619
BmuI	ACTGGG	1 cut(s)	1296
BpiI	GAAGAC	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	1271, 1303
Bpu14I	TTCGAA	1 cut(s)	158
BpuEI	CTTGAG	2 cut(s)	95, 1602
Bsa29I	ATCGAT	1 cut(s)	1662
BsaAI	YACGTR	1 cut(s)	439
BsaBI	GATNNNNATC	1 cut(s)	540
BsaI	GGTCTC	1 cut(s)	1008
BsaJI	CCNNGG	4 cut(s)	549, 641, 1154, 1536
Bsc4I	CCNNNNNNNGG	2 cut(s)	654, 1256
Bse1I	ACTGG	2 cut(s)	648, 1302
Bse3DI	GCAATG	2 cut(s)	1109, 1575
Bse8I	GATNNNNATC	1 cut(s)	540
BseCI	ATCGAT	1 cut(s)	1662
BseDI	CCNNGG	4 cut(s)	549, 641, 1154, 1536
BseGI	GGATG	5 cut(s)	70, 322, 343, 841, 1369
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	2 cut(s)	654, 1256
BseMI	GCAATG	2 cut(s)	1109, 1575
BseMII	CTCAG	3 cut(s)	97, 809, 1242
BseNI	ACTGG	2 cut(s)	648, 1302
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	9 cut(s)	497, 1018, 1148, 1160, 1244, 1556, 1564, 1573, 1576
BsgI	GTGCAG	2 cut(s)	795, 1563
Bsh1236I	CGCG	1 cut(s)	551
BshFI	GGCC	2 cut(s)	192, 647
BshVI	ATCGAT	1 cut(s)	1662
BsiHKAI	GWGCWC	1 cut(s)	102
BslI	CCNNNNNNNGG	2 cut(s)	654, 1256
BsmAI	GTCTC	2 cut(s)	1008, 1691
BsmBI	CGTCTC	1 cut(s)	1691
BsnI	GGCC	2 cut(s)	192, 647
Bso31I	GGTCTC	1 cut(s)	1008
Bsp119I	TTCGAA	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp1407I	TGTACA	1 cut(s)	204
Bsp143I	GATC	8 cut(s)	44, 65, 502, 529, 582, 1140, 1240, 1666
BspACI	CCGC	4 cut(s)	189, 549, 551, 1109
BspANI	GGCC	2 cut(s)	192, 647
BspCNI	CTCAG	3 cut(s)	96, 808, 1243
BspDI	ATCGAT	1 cut(s)	1662
BspFNI	CGCG	1 cut(s)	551
BspHI	TCATGA	2 cut(s)	1326, 1669
BspMAI	CTGCAG	1 cut(s)	1234
BspPI	GGATC	3 cut(s)	39, 510, 537
BspQI	GCTCTTC	3 cut(s)	90, 1058, 1398
BspT104I	TTCGAA	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	1008
BsrDI	GCAATG	2 cut(s)	1109, 1575
BsrGI	TGTACA	1 cut(s)	204
BsrI	ACTGG	2 cut(s)	648, 1302
BssECI	CCNNGG	4 cut(s)	549, 641, 1154, 1536
BssMI	GATC	8 cut(s)	44, 65, 502, 529, 582, 1140, 1240, 1666
BssT1I	CCWWGG	1 cut(s)	1154
Bst4CI	ACNGT	3 cut(s)	425, 1186, 1642
Bst6I	CTCTTC	5 cut(s)	90, 1058, 1210, 1398, 1689
BstAPI	GCANNNNNTGC	3 cut(s)	1574, 1586, 1598
BstAUI	TGTACA	1 cut(s)	204
BstBAI	YACGTR	1 cut(s)	439
BstBI	TTCGAA	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	1729
BstDEI	CTNAG	6 cut(s)	83, 566, 795, 1244, 1251, 1706
BstDSI	CCRYGG	2 cut(s)	549, 1536
BstF5I	GGATG	5 cut(s)	70, 322, 343, 841, 1369
BstFNI	CGCG	1 cut(s)	551
BstH2I	RGCGCY	2 cut(s)	34, 1742
BstHHI	GCGC	3 cut(s)	33, 385, 1741
BstKTI	GATC	8 cut(s)	47, 68, 505, 532, 585, 1143, 1243, 1669
BstMAI	GTCTC	2 cut(s)	1008, 1691
BstMBI	GATC	8 cut(s)	44, 65, 502, 529, 582, 1140, 1240, 1666
BstSFI	CTRYAG	2 cut(s)	1230, 1398
BstSNI	TACGTA	1 cut(s)	439
BstUI	CGCG	1 cut(s)	551
BstV1I	GCAGC	9 cut(s)	497, 1018, 1148, 1160, 1244, 1556, 1564, 1573, 1576
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	2 cut(s)	44, 529
BstYI	RGATCY	2 cut(s)	44, 529
Bsu15I	ATCGAT	1 cut(s)	1662
BsuRI	GGCC	2 cut(s)	192, 647
BsuTUI	ATCGAT	1 cut(s)	1662
BtgI	CCRYGG	2 cut(s)	549, 1536
BtgZI	GCGATG	1 cut(s)	934
BtsCI	GGATG	5 cut(s)	70, 322, 343, 841, 1369
BtsI	GCAGTG	1 cut(s)	981
BtsIMutI	CAGTG	1 cut(s)	981
Cac8I	GCNNGC	1 cut(s)	1729
CaiI	CAGNNNCTG	1 cut(s)	1741
CciI	TCATGA	2 cut(s)	1326, 1669
CfoI	GCGC	3 cut(s)	33, 385, 1741
Cfr13I	GGNCC	2 cut(s)	645, 1418
Cfr42I	CCGCGG	1 cut(s)	552
ClaI	ATCGAT	1 cut(s)	1662
CseI	GACGC	2 cut(s)	1532, 1708
Csp6I	GTAC	2 cut(s)	205, 310
CviAII	CATG	5 cut(s)	512, 721, 944, 1327, 1670
CviQI	GTAC	2 cut(s)	205, 310
DdeI	CTNAG	6 cut(s)	83, 566, 795, 1244, 1251, 1706
DpnI	GATC	8 cut(s)	46, 67, 504, 531, 584, 1142, 1242, 1668
DpnII	GATC	8 cut(s)	44, 65, 502, 529, 582, 1140, 1240, 1666
Eam1104I	CTCTTC	5 cut(s)	90, 1058, 1210, 1398, 1689
EarI	CTCTTC	5 cut(s)	90, 1058, 1210, 1398, 1689
EciI	GGCGGA	1 cut(s)	1098
Ecl136II	GAGCTC	1 cut(s)	100
Eco105I	TACGTA	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	1154
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	1008
Eco47I	GGWCC	1 cut(s)	1418
Eco47III	AGCGCT	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	430, 947
EcoICRI	GAGCTC	1 cut(s)	100
EcoRI	GAATTC	1 cut(s)	1021
EcoT14I	CCWWGG	1 cut(s)	1154
EcoT22I	ATGCAT	2 cut(s)	436, 1515
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	1154
Esp3I	CGTCTC	1 cut(s)	1691
FaeI	CATG	5 cut(s)	515, 724, 947, 1330, 1673
FalI	AAGNNNNNCTT	4 cut(s)	276, 308, 1686, 1718
FatI	CATG	5 cut(s)	511, 720, 943, 1326, 1669
FbaI	TGATCA	2 cut(s)	582, 1666
FokI	GGATG	5 cut(s)	57, 329, 350, 848, 1376
FriOI	GRGCYC	1 cut(s)	102
FspBI	CTAG	8 cut(s)	63, 185, 254, 533, 891, 1134, 1236, 1560
GlaI	GCGC	3 cut(s)	32, 384, 1740
HaeII	RGCGCY	2 cut(s)	34, 1742
HaeIII	GGCC	2 cut(s)	192, 647
HgaI	GACGC	2 cut(s)	1532, 1708
HhaI	GCGC	3 cut(s)	33, 385, 1741
Hin1II	CATG	5 cut(s)	515, 724, 947, 1330, 1673
Hin6I	GCGC	3 cut(s)	31, 383, 1739
HinP1I	GCGC	3 cut(s)	31, 383, 1739
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	8 cut(s)	167, 377, 407, 572, 806, 1168, 1282, 1651
HphI	GGTGA	2 cut(s)	568, 940
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	7 cut(s)	44, 86, 404, 449, 507, 798, 966
Hpy8I	GTNNAC	1 cut(s)	207
Hpy99I	CGWCG	2 cut(s)	393, 1073
HpyAV	CCTTC	9 cut(s)	154, 349, 457, 469, 842, 971, 1118, 1324, 1409
HpyCH4III	ACNGT	3 cut(s)	425, 1186, 1642
HpyCH4IV	ACGT	1 cut(s)	438
HpyF3I	CTNAG	6 cut(s)	83, 566, 795, 1244, 1251, 1706
HpySE526I	ACGT	1 cut(s)	438
Hsp92II	CATG	5 cut(s)	515, 724, 947, 1330, 1673
HspAI	GCGC	3 cut(s)	31, 383, 1739
Ksp22I	TGATCA	2 cut(s)	582, 1666
KspI	CCGCGG	1 cut(s)	552
Kzo9I	GATC	8 cut(s)	44, 65, 502, 529, 582, 1140, 1240, 1666
LguI	GCTCTTC	3 cut(s)	90, 1058, 1398
LmnI	GCTCC	2 cut(s)	220, 826
LpnPI	CCDG	9 cut(s)	661, 1031, 1125, 1174, 1185, 1263, 1315, 1592, 1721
Lsp1109I	GCAGC	9 cut(s)	497, 1018, 1148, 1160, 1244, 1556, 1564, 1573, 1576
LweI	GCATC	4 cut(s)	328, 666, 1354, 1619
MaeI	CTAG	8 cut(s)	63, 185, 254, 533, 891, 1134, 1236, 1560
MaeII	ACGT	1 cut(s)	438
MaeIII	GTNAC	2 cut(s)	603, 979
MalI	GATC	8 cut(s)	46, 67, 504, 531, 584, 1142, 1242, 1668
MboI	GATC	8 cut(s)	44, 65, 502, 529, 582, 1140, 1240, 1666
MfeI	CAATTG	1 cut(s)	1061
MflI	RGATCY	2 cut(s)	44, 529
MhlI	GDGCHC	1 cut(s)	102
MlyI	GAGTC	2 cut(s)	581, 1645
MmeI	TCCRAC	2 cut(s)	382, 804
Mph1103I	ATGCAT	2 cut(s)	436, 1515
MroXI	GAANNNNTTC	2 cut(s)	363, 1475
MseI	TTAA	2 cut(s)	875, 1082
MslI	CAYNNNNRTG	3 cut(s)	53, 267, 439
MspA1I	CMGCKG	2 cut(s)	551, 1547
MunI	CAATTG	1 cut(s)	1061
MvnI	CGCG	1 cut(s)	551
NdeII	GATC	8 cut(s)	44, 65, 502, 529, 582, 1140, 1240, 1666
NlaIII	CATG	5 cut(s)	515, 724, 947, 1330, 1673
NmeAIII	GCCGAG	1 cut(s)	666
NmuCI	GTSAC	2 cut(s)	603, 979
NsiI	ATGCAT	2 cut(s)	436, 1515
NspV	TTCGAA	1 cut(s)	158
PagI	TCATGA	2 cut(s)	1326, 1669
PciSI	GCTCTTC	3 cut(s)	90, 1058, 1398
PdmI	GAANNNNTTC	2 cut(s)	363, 1475
PfeI	GAWTC	6 cut(s)	167, 377, 407, 806, 1168, 1282
PflFI	GACNNNGTC	1 cut(s)	425
PflMI	CCANNNNNTGG	1 cut(s)	654
PleI	GAGTC	2 cut(s)	580, 1645
PpsI	GAGTC	2 cut(s)	580, 1645
Ppu21I	YACGTR	1 cut(s)	439
Psp124BI	GAGCTC	1 cut(s)	102
PspPI	GGNCC	2 cut(s)	645, 1418
PstI	CTGCAG	1 cut(s)	1234
PstNI	CAGNNNCTG	1 cut(s)	1741
PsuI	RGATCY	2 cut(s)	44, 529
PsyI	GACNNNGTC	1 cut(s)	425
PvuII	CAGCTG	1 cut(s)	1547
RsaI	GTAC	2 cut(s)	206, 311
RsaNI	GTAC	2 cut(s)	205, 310
RseI	CAYNNNNRTG	3 cut(s)	53, 267, 439
SacI	GAGCTC	1 cut(s)	102
SacII	CCGCGG	1 cut(s)	552
SapI	GCTCTTC	3 cut(s)	90, 1058, 1398
SaqAI	TTAA	2 cut(s)	875, 1082
Sau3AI	GATC	8 cut(s)	44, 65, 502, 529, 582, 1140, 1240, 1666
Sau96I	GGNCC	2 cut(s)	645, 1418
ScaI	AGTACT	1 cut(s)	311
SchI	GAGTC	2 cut(s)	581, 1645
SduI	GDGCHC	1 cut(s)	102
SfaNI	GCATC	4 cut(s)	328, 666, 1354, 1619
SfcI	CTRYAG	2 cut(s)	1230, 1398
Sfr303I	CCGCGG	1 cut(s)	552
SfuI	TTCGAA	1 cut(s)	158
SgrBI	CCGCGG	1 cut(s)	552
SinI	GGWCC	1 cut(s)	1418
SmiMI	CAYNNNNRTG	3 cut(s)	53, 267, 439
SmlI	CTYRAG	2 cut(s)	110, 1617
SmoI	CTYRAG	2 cut(s)	110, 1617
SnaBI	TACGTA	1 cut(s)	439
SsiI	CCGC	4 cut(s)	189, 549, 551, 1109
SspI	AATATT	2 cut(s)	672, 1195
SspMI	CTAG	8 cut(s)	63, 185, 254, 533, 891, 1134, 1236, 1560
SstI	GAGCTC	1 cut(s)	102
StyI	CCWWGG	1 cut(s)	1154
TaaI	ACNGT	3 cut(s)	425, 1186, 1642
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	9 cut(s)	158, 367, 388, 410, 417, 1071, 1479, 1654, 1662
TatI	WGTACW	2 cut(s)	204, 309
TauI	GCSGC	2 cut(s)	192, 551
TfiI	GAWTC	6 cut(s)	167, 377, 407, 806, 1168, 1282
Tru1I	TTAA	2 cut(s)	875, 1082
Tru9I	TTAA	2 cut(s)	875, 1082
TscAI	CASTG	1 cut(s)	988
TseFI	GTSAC	2 cut(s)	603, 979
TseI	GCWGC	9 cut(s)	485, 1031, 1148, 1161, 1232, 1544, 1577, 1586, 1589
Tsp45I	GTSAC	2 cut(s)	603, 979
TspRI	CASTG	1 cut(s)	988
Tth111I	GACNNNGTC	1 cut(s)	425
Van91I	CCANNNNNTGG	1 cut(s)	654
VpaK11BI	GGWCC	1 cut(s)	1418
XapI	RAATTY	2 cut(s)	1021, 1719
XbaI	TCTAGA	1 cut(s)	532
XmnI	GAANNNNTTC	2 cut(s)	363, 1475
XspI	CTAG	8 cut(s)	63, 185, 254, 533, 891, 1134, 1236, 1560
ZrmI	AGTACT	1 cut(s)	311
Zsp2I	ATGCAT	2 cut(s)	436, 1515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.