Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007566

Physical Location & Seq

Genomic Coordinates Forward (+)

9980650 .. 9982001

Gene Structure 1352 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG120000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGACAGAGGTGAAGCAGATGAGGCATGACATCGCTTCACTCCTTCAGAAAGGTCAAGAAGTCACTGCTCGTATCTTGGCTCTTCTGCCAATTGGTCGTGGAAAGACTTTTAATCATCGAAAAGCAAAGATGATTGAGAATCTCTCTATCAAAACCCCCAGTGGTGAAGTGAAGTTGAAACTCATGAAGGAAATAGCCAATGAGTATCGGGTTGAATGGGATGCAACAGAAAAGGAGTTTTTCAAGCCTACAGAAGAGCTTATAGTAGGACCAAAAACTTTTGTTAGTGGTGCTACATTACCTCTGCAATCTGTTCAGTTGAACAAGTTCGAGAAAACAAGTGGTGGAGAAAGGGGAAATATGCATTATCAAGGCGCACCATCAGCCGCGGAAGCAGCTGTGATATTTGCCAGTGAGGCAATGTCTGCTGCACAAGCTGCTGCAATTCTTGCCAATCAGGTATCATCTCAAGCACCTCACTGTGTTGATACTGTGTCCAAGACTCGAAACATCGATGATCATGAAGAATTAGCTGTTGATGAGGAAGAGACGCTTCTTAGTGATGATGAAATTTTTGCACGCTTTCAGGCGCTGAAGTTGCACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 ko04144 map00592 map01100 map01110 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

202

Amino Acids

22.36

Weight (kDa)

5.91

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35720
fragaria_vesca	FvH4_1g10720 FvH4_1g10730
malus_domestica	MD02G1121200.v1.1 MD15G1235000.v1.1
prunus_persica	Prupe.7G178100_v2.0.a1
pyrus_communis	pycom15g20920
rosa_chinensis	RchiOBHm_Chr2g0097881 RchiOBHm_Chr2g0097891
rosa_laevigata	RLG00000016743
rosa_multiflora	Rmu_co8303561.1_g000001 Rmu_sc0009572.1_g000010
rosa_roxburghii	Rroxscaffold_2G00144470
rosa_rugosa	Rorug02G0069000
rosa_samantha	Rh2AG115700 Rh2AG115800 Rh2BG118600 Rh2BG118700 Rh2CG120100 Rh2CG120300 Rh2DG119900 Rh2DG120000
rosa_wichuraiana	Rw2G009050 Rw2G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	389
AciI	CCGC	2 cut(s)	387, 389
AcsI	RAATTY	1 cut(s)	570
AcuI	CTGAAG	1 cut(s)	29
AgsI	TTSAA	4 cut(s)	178, 215, 244, 322
AluBI	AGCT	4 cut(s)	259, 398, 437, 533
AluI	AGCT	4 cut(s)	259, 398, 437, 533
Alw26I	GTCTC	1 cut(s)	542
AlwNI	CAGNNNCTG	1 cut(s)	592
ApeKI	GCWGC	4 cut(s)	395, 428, 437, 440
ApoI	RAATTY	1 cut(s)	570
Asp700I	GAANNNNTTC	1 cut(s)	326
AspLEI	GCGC	2 cut(s)	377, 592
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	22, 176
AvaII	GGWCC	1 cut(s)	269
BbvI	GCAGC	4 cut(s)	407, 415, 424, 427
BccI	CCATC	1 cut(s)	388
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	1 cut(s)	542
BfmI	CTRYAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	593
BglI	GCCNNNNNGGC	1 cut(s)	416
BisI	GCNGC	5 cut(s)	387, 396, 429, 438, 441
BlsI	GCNGC	5 cut(s)	388, 397, 430, 439, 442
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmrI	ACTGGG	1 cut(s)	153
BmsI	GCATC	1 cut(s)	211
BmuI	ACTGGG	1 cut(s)	153
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpuEI	CTTGAG	1 cut(s)	453
Bsa29I	ATCGAT	1 cut(s)	513
BsaJI	CCNNGG	1 cut(s)	387
Bse1I	ACTGG	2 cut(s)	159, 411
Bse3DI	GCAATG	1 cut(s)	426
BseCI	ATCGAT	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	1 cut(s)	226
BseMI	GCAATG	1 cut(s)	426
BseNI	ACTGG	2 cut(s)	159, 411
BseXI	GCAGC	4 cut(s)	407, 415, 424, 427
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	389
BshVI	ATCGAT	1 cut(s)	513
BsmAI	GTCTC	1 cut(s)	542
BsmBI	CGTCTC	1 cut(s)	542
Bsp143I	GATC	1 cut(s)	517
BspACI	CCGC	2 cut(s)	387, 389
BspDI	ATCGAT	1 cut(s)	513
BspFNI	CGCG	1 cut(s)	389
BspHI	TCATGA	2 cut(s)	183, 520
BspQI	GCTCTTC	2 cut(s)	87, 249
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	159, 411
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	1 cut(s)	517
Bst4CI	ACNGT	2 cut(s)	482, 493
Bst6I	CTCTTC	3 cut(s)	87, 249, 540
BstAPI	GCANNNNNTGC	3 cut(s)	425, 437, 449
BstC8I	GCNNGC	1 cut(s)	580
BstDEI	CTNAG	1 cut(s)	557
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	1 cut(s)	226
BstFNI	CGCG	1 cut(s)	389
BstH2I	RGCGCY	1 cut(s)	593
BstHHI	GCGC	2 cut(s)	377, 592
BstKTI	GATC	1 cut(s)	520
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	1 cut(s)	517
BstSFI	CTRYAG	1 cut(s)	249
BstUI	CGCG	1 cut(s)	389
BstV1I	GCAGC	4 cut(s)	407, 415, 424, 427
Bsu15I	ATCGAT	1 cut(s)	513
BsuTUI	ATCGAT	1 cut(s)	513
BtgI	CCRYGG	1 cut(s)	387
BtgZI	GCGATG	1 cut(s)	16
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	4 cut(s)	63, 166, 418, 478
Cac8I	GCNNGC	1 cut(s)	580
CaiI	CAGNNNCTG	1 cut(s)	592
CciI	TCATGA	2 cut(s)	183, 520
CfoI	GCGC	2 cut(s)	377, 592
Cfr13I	GGNCC	1 cut(s)	269
Cfr42I	CCGCGG	1 cut(s)	390
ClaI	ATCGAT	1 cut(s)	513
CseI	GACGC	1 cut(s)	559
CviAII	CATG	3 cut(s)	26, 184, 521
CviJI	RGCY	8 cut(s)	80, 197, 247, 259, 386, 398, 437, 533
CviKI_1	RGCY	8 cut(s)	80, 197, 247, 259, 386, 398, 437, 533
DdeI	CTNAG	1 cut(s)	557
DpnI	GATC	1 cut(s)	519
DpnII	GATC	1 cut(s)	517
Eam1104I	CTCTTC	3 cut(s)	87, 249, 540
EarI	CTCTTC	3 cut(s)	87, 249, 540
Eco47I	GGWCC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	29
EcoT22I	ATGCAT	1 cut(s)	366
Esp3I	CGTCTC	1 cut(s)	542
FaeI	CATG	3 cut(s)	29, 187, 524
FaiI	YATR	5 cut(s)	27, 185, 263, 362, 522
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FatI	CATG	3 cut(s)	25, 183, 520
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	5 cut(s)	387, 396, 429, 438, 441
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	5 cut(s)	387, 396, 429, 438, 441
GlaI	GCGC	2 cut(s)	376, 591
GluI	GCNGC	5 cut(s)	387, 396, 429, 438, 441
HaeII	RGCGCY	1 cut(s)	593
HgaI	GACGC	1 cut(s)	559
HhaI	GCGC	2 cut(s)	377, 592
Hin1II	CATG	3 cut(s)	29, 187, 524
Hin6I	GCGC	2 cut(s)	375, 590
HinP1I	GCGC	2 cut(s)	375, 590
HinfI	GANTC	2 cut(s)	139, 502
HphI	GGTGA	2 cut(s)	22, 176
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	4 cut(s)	56, 184, 331, 521
HpyAV	CCTTC	2 cut(s)	53, 181
HpyCH4III	ACNGT	2 cut(s)	482, 493
HpyCH4V	TGCA	7 cut(s)	224, 307, 364, 431, 443, 578, 601
HpyF3I	CTNAG	1 cut(s)	557
Hsp92II	CATG	3 cut(s)	29, 187, 524
HspAI	GCGC	2 cut(s)	375, 590
Ksp22I	TGATCA	1 cut(s)	517
KspI	CCGCGG	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	517
LguI	GCTCTTC	2 cut(s)	87, 249
LpnPI	CCDG	4 cut(s)	172, 424, 443, 572
Lsp1109I	GCAGC	4 cut(s)	407, 415, 424, 427
LweI	GCATC	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	519
MboI	GATC	1 cut(s)	517
MboII	GAAGA	4 cut(s)	74, 266, 536, 557
MfeI	CAATTG	1 cut(s)	90
MluCI	AATT	4 cut(s)	90, 444, 527, 570
MlyI	GAGTC	1 cut(s)	496
MnlI	CCTC	5 cut(s)	15, 312, 409, 486, 535
Mph1103I	ATGCAT	1 cut(s)	366
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	1 cut(s)	111
MspA1I	CMGCKG	2 cut(s)	389, 398
MunI	CAATTG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	389
NdeII	GATC	1 cut(s)	517
NlaIII	CATG	3 cut(s)	29, 187, 524
NmuCI	GTSAC	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	366
PagI	TCATGA	2 cut(s)	183, 520
PciSI	GCTCTTC	2 cut(s)	87, 249
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	5 cut(s)	388, 397, 430, 439, 442
PleI	GAGTC	1 cut(s)	496
PpsI	GAGTC	1 cut(s)	496
PspPI	GGNCC	1 cut(s)	269
PstNI	CAGNNNCTG	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	398
SacII	CCGCGG	1 cut(s)	390
SapI	GCTCTTC	2 cut(s)	87, 249
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	5 cut(s)	387, 396, 429, 438, 441
Sau3AI	GATC	1 cut(s)	517
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	1 cut(s)	496
SetI	ASST	9 cut(s)	12, 55, 261, 304, 400, 439, 462, 478, 535
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	249
Sfr303I	CCGCGG	1 cut(s)	390
SgrBI	CCGCGG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	468
SmoI	CTYRAG	1 cut(s)	468
Sse9I	AATT	4 cut(s)	90, 444, 527, 570
SsiI	CCGC	2 cut(s)	387, 389
TaaI	ACNGT	2 cut(s)	482, 493
TaqI	TCGA	4 cut(s)	118, 330, 505, 513
TasI	AATT	4 cut(s)	90, 444, 527, 570
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	4 cut(s)	70, 166, 418, 485
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	4 cut(s)	395, 428, 437, 440
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	3 cut(s)	200, 537, 582
TspRI	CASTG	4 cut(s)	70, 166, 418, 485
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	570
XmnI	GAANNNNTTC	1 cut(s)	326
Zsp2I	ATGCAT	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.