MD02G1121200.v1.1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0007566
Physical Location & Seq
Forward (+)
9891283 .. 9892236
954 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1121200.v1.1.491

Sequence Viewer

Length: 954 bp
ATGATGAAAAGAGCAACAATGGCTTCGTTCTCTCCAAAACCCTCAAAGCTTCACAATGTTGGATCAATTAGTATGCCGGTTAGGTCACATCCAAGCACATCCAAAACTGAGGAAGAGCTGAACAAGCTCAAGGTCTGGGAGGCACAGTTGACATCATCGTCGTCGTCGCCTGTGTCACCAGAAGCGGATTCAATATGCAAAGGGCTTGGTGGTCTCAAAGAGTTGTACGTTTGTATTGAGGAGCTTCTTCACCTGCCATTGGCACAGCAAGCTCTAGCCCTTCACCAAAATGAGAAATGGGTTGAAGAGCTGTTGGATAGTTCTGTCAAGTACTTGGATGTATGTGGAAACACAAAGGATTCCATTGGGACCATGAAGGAAAGCGTTAGAGGTGTTCAATCTGCTCTTCGGAGAAGAAAGGTGGGAGATTCGAGCTTCGAAGACATTGTAAGTTCATATGTTTGCATAAGAAAAAAGATGAACAAGGAAATTGTGCAGTTTGTGGCATCATTGAAGCAAATGGATCAAAAGTACGAAGCATTTCCTTTGGATCTCGACAACCATCTGGCTCCGATGGTGCGGGTGTTCAGAGAGGCAAGTTTGATTACCAGCTCCATTTTTCAGTCACTTTCTTCATTTCTGTCCACTCCAATTTTGAAGCCAAGGCCTAGCAGATGGTCGTTGGTTTCGATTTTGTTGCACAAAGGGGTGTTGGTTTGTGACAACAACCAACGCAAAGGCATGAACGAGCTGGAAACCGTAGATATTGCAATTAGCAACATGGTTGTGCATAATTCAGGTGAAGATTTTGTGGATGCTCAGAAGGTTCTATCTACACAACGAAGGTTGGAGGTCTTGGATTCAAGCATTGAAGGCATTGAAAATGGTTTGGAGGGATTGTTTAGGGTCTTGATCCACATCAGAGTTTCTCTCCTAAACATACTTTCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

318

Amino Acids

35.36

Weight (kDa)

7.65

Isoelectric Point (pI)

58.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 68 - 314 2.4e-83 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 261
AasI GACNNNNNNGTC 1 cut(s) 157
Acc36I ACCTGC 1 cut(s) 261
AciI CCGC 2 cut(s) 185, 580
AclWI GGATC 4 cut(s) 70, 531, 558, 907
AfaI GTAC 3 cut(s) 227, 332, 533
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 8 cut(s) 192, 305, 398, 514, 658, 864, 872, 881
AluBI AGCT 9 cut(s) 49, 118, 127, 244, 272, 310, 435, 612, 751
AluI AGCT 9 cut(s) 49, 118, 127, 244, 272, 310, 435, 612, 751
Alw26I GTCTC 1 cut(s) 218
AlwI GGATC 4 cut(s) 70, 531, 558, 907
AoxI GGCC 1 cut(s) 665
Asp700I GAANNNNTTC 1 cut(s) 540
AspS9I GGNCC 1 cut(s) 369
AsuHPI GGTGA 4 cut(s) 168, 242, 275, 812
AsuII TTCGAA 1 cut(s) 438
AvaII GGWCC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 447
BccI CCATC 3 cut(s) 568, 570, 669
BcgI CGANNNNNNTGC 2 cut(s) 679, 713
BcoDI GTCTC 1 cut(s) 218
BfaI CTAG 2 cut(s) 275, 669
BfuAI ACCTGC 1 cut(s) 261
BmcAI AGTACT 1 cut(s) 332
Bme18I GGWCC 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 369
BmiI GGNNCC 2 cut(s) 370, 570
BmsI GCATC 2 cut(s) 515, 805
BpiI GAAGAC 1 cut(s) 447
BplI GAGNNNNNCTC 2 cut(s) 915, 947
Bpu14I TTCGAA 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 917
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 662
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 884, 914
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse118I RCCGGY 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 917
BseDI CCNNGG 1 cut(s) 662
BseGI GGATG 4 cut(s) 88, 98, 343, 820
BseJI GATNNNNATC 1 cut(s) 917
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 2 cut(s) 99, 833
BseRI GAGGAG 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 515
BshFI GGCC 1 cut(s) 667
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 382
BsnI GGCC 1 cut(s) 667
Bso31I GGTCTC 1 cut(s) 218
Bsp119I TTCGAA 1 cut(s) 438
Bsp143I GATC 4 cut(s) 62, 523, 550, 912
BspACI CCGC 2 cut(s) 185, 580
BspANI GGCC 1 cut(s) 667
BspCNI CTCAG 2 cut(s) 100, 832
BspLI GGNNCC 2 cut(s) 370, 570
BspMI ACCTGC 1 cut(s) 261
BspPI GGATC 4 cut(s) 70, 531, 558, 907
BspQI GCTCTTC 3 cut(s) 108, 300, 411
BspT104I TTCGAA 1 cut(s) 438
BspTNI GGTCTC 1 cut(s) 218
BsrFI RCCGGY 1 cut(s) 76
BssAI RCCGGY 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 662
BssMI GATC 4 cut(s) 62, 523, 550, 912
BssT1I CCWWGG 1 cut(s) 662
Bst4CI ACNGT 2 cut(s) 147, 760
Bst6I CTCTTC 3 cut(s) 108, 300, 411
BstBI TTCGAA 1 cut(s) 438
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 108, 819
BstF5I GGATG 4 cut(s) 88, 98, 343, 820
BstKTI GATC 4 cut(s) 65, 526, 553, 915
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 4 cut(s) 62, 523, 550, 912
BstMWI GCNNNNNNNGC 4 cut(s) 20, 124, 269, 873
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
BsuRI GGCC 1 cut(s) 667
BtsCI GGATG 4 cut(s) 88, 98, 343, 820
BveI ACCTGC 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 270
Cfr10I RCCGGY 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 369
Csp6I GTAC 3 cut(s) 226, 331, 532
CviAII CATG 3 cut(s) 373, 742, 781
CviQI GTAC 3 cut(s) 226, 331, 532
DdeI CTNAG 2 cut(s) 108, 819
DpnI GATC 4 cut(s) 64, 525, 552, 914
DpnII GATC 4 cut(s) 62, 523, 550, 912
DrdI GACNNNNNNGTC 1 cut(s) 157
DseDI GACNNNNNNGTC 1 cut(s) 157
Eam1104I CTCTTC 3 cut(s) 108, 300, 411
EarI CTCTTC 3 cut(s) 108, 300, 411
Eco130I CCWWGG 1 cut(s) 662
Eco147I AGGCCT 1 cut(s) 667
Eco31I GGTCTC 1 cut(s) 218
Eco47I GGWCC 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 662
ErhI CCWWGG 1 cut(s) 662
FaeI CATG 3 cut(s) 376, 745, 784
FaqI GGGAC 1 cut(s) 382
FatI CATG 3 cut(s) 372, 741, 780
FauI CCCGC 1 cut(s) 573
FauNDI CATATG 1 cut(s) 457
FokI GGATG 4 cut(s) 75, 85, 350, 827
FspBI CTAG 2 cut(s) 275, 669
HaeIII GGCC 1 cut(s) 667
HapII CCGG 1 cut(s) 77
Hin1II CATG 3 cut(s) 376, 745, 784
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 4 cut(s) 188, 359, 428, 860
HpaII CCGG 1 cut(s) 77
HphI GGTGA 4 cut(s) 168, 242, 275, 812
Hpy166II GTNNAC 2 cut(s) 150, 645
Hpy188I TCNGA 5 cut(s) 411, 573, 590, 822, 923
Hpy188III TCNNGA 2 cut(s) 554, 910
Hpy8I GTNNAC 2 cut(s) 150, 645
Hpy99I CGWCG 3 cut(s) 163, 166, 169
HpyAV CCTTC 5 cut(s) 290, 370, 817, 837, 866
HpyCH4III ACNGT 2 cut(s) 147, 760
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 6 cut(s) 198, 465, 496, 700, 770, 790
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 124, 269, 873
HpyF3I CTNAG 2 cut(s) 108, 819
HpySE526I ACGT 1 cut(s) 228
Hsp92II CATG 3 cut(s) 376, 745, 784
Kzo9I GATC 4 cut(s) 62, 523, 550, 912
LguI GCTCTTC 3 cut(s) 108, 300, 411
LmnI GCTCC 3 cut(s) 241, 574, 617
LpnPI CCDG 9 cut(s) 90, 121, 183, 192, 266, 551, 622, 737, 783
LweI GCATC 2 cut(s) 515, 805
MaeI CTAG 2 cut(s) 275, 669
MaeII ACGT 1 cut(s) 228
MaeIII GTNAC 4 cut(s) 84, 174, 624, 719
MalI GATC 4 cut(s) 64, 525, 552, 914
MboI GATC 4 cut(s) 62, 523, 550, 912
MboII GAAGA 8 cut(s) 125, 239, 317, 398, 426, 452, 624, 815
MflI RGATCY 1 cut(s) 550
MluCI AATT 5 cut(s) 66, 489, 651, 771, 793
MmeI TCCRAC 3 cut(s) 40, 294, 828
MnlI CCTC 8 cut(s) 52, 103, 133, 232, 383, 586, 844, 886
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 1 cut(s) 952
MslI CAYNNNNRTG 2 cut(s) 288, 785
MspI CCGG 1 cut(s) 77
MwoI GCNNNNNNNGC 4 cut(s) 20, 124, 269, 873
NdeI CATATG 1 cut(s) 457
NdeII GATC 4 cut(s) 62, 523, 550, 912
NlaIII CATG 3 cut(s) 376, 745, 784
NlaIV GGNNCC 2 cut(s) 370, 570
NmuCI GTSAC 4 cut(s) 84, 174, 624, 719
NspV TTCGAA 1 cut(s) 438
PaqCI CACCTGC 1 cut(s) 261
PceI AGGCCT 1 cut(s) 667
PciSI GCTCTTC 3 cut(s) 108, 300, 411
PcsI WCGNNNNNNNCGW 1 cut(s) 686
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 4 cut(s) 188, 359, 428, 860
PspN4I GGNNCC 2 cut(s) 370, 570
PspPI GGNCC 1 cut(s) 369
PsuI RGATCY 1 cut(s) 550
RsaI GTAC 3 cut(s) 227, 332, 533
RsaNI GTAC 3 cut(s) 226, 331, 532
RseI CAYNNNNRTG 2 cut(s) 288, 785
SapI GCTCTTC 3 cut(s) 108, 300, 411
SaqAI TTAA 1 cut(s) 952
Sau3AI GATC 4 cut(s) 62, 523, 550, 912
Sau96I GGNCC 1 cut(s) 369
ScaI AGTACT 1 cut(s) 332
SfaNI GCATC 2 cut(s) 515, 805
SfuI TTCGAA 1 cut(s) 438
SinI GGWCC 1 cut(s) 369
SmiMI CAYNNNNRTG 2 cut(s) 288, 785
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 5 cut(s) 66, 489, 651, 771, 793
SseBI AGGCCT 1 cut(s) 667
SsiI CCGC 2 cut(s) 185, 580
SspMI CTAG 2 cut(s) 275, 669
StuI AGGCCT 1 cut(s) 667
StyI CCWWGG 1 cut(s) 662
TaaI ACNGT 2 cut(s) 147, 760
TaiI ACGT 1 cut(s) 231
TaqI TCGA 4 cut(s) 431, 438, 555, 689
TasI AATT 5 cut(s) 66, 489, 651, 771, 793
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 4 cut(s) 188, 359, 428, 860
Tru1I TTAA 1 cut(s) 952
Tru9I TTAA 1 cut(s) 952
TseFI GTSAC 4 cut(s) 84, 174, 624, 719
Tsp45I GTSAC 4 cut(s) 84, 174, 624, 719
TspDTI ATGAA 6 cut(s) 20, 389, 444, 494, 624, 758
VpaK11BI GGWCC 1 cut(s) 369
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 2 cut(s) 275, 669
ZrmI AGTACT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.