FvH4_1g10720

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0007566
Physical Location & Seq
Forward (+)
5864128 .. 5865339
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g10720.t1

Sequence Viewer

Length: 954 bp
ATGATGAGAAGAGCAACAATGGCTTCTTTCTCTCCAAAACCCACAAAGCGCTACAATGTCAGATCCATTAGTATGCCCACCAGATCACATCCCACCACAGTCAGAATTGAAGAACAGCTCAACAAGCTCAAGTCTTGGGAGGCAACTTCAACATCTTCATCTTCATCTTCATCAATTTGTTCAAAGGCGGGTTCACTATGCAAAGGACTAAGCGGCCTCAAAGATTTGTACACTTGCATTGAGGAGCTTCTTCAGCTACCATTGACACAAAAGGCTCTAGCTTTGCACCAGAACGAGAAATGGGTGGAAGAATTGCTTGATGGTTCTGTCAAGTACTTGGATGTATGTGGCAACACAAGGGATGCCATTTTGACAATGAAGGAAAGCGTTCGAGAACTTGAATCTGCGCTTCGAAGAAGACTGGTTGGAGATTCAAACCTGGAAGACAGTGTCAATGCATATGTAAGCTTCAGAAAAAAGATGAAGAAGGAAGTTGTGAAGGTTTTGGCAGCAATGAAGCAAATGGATCAGAAACATGAGGCCTTTCCTTTGGATCTAGATAACCATCTCGCCGCGGTGGTGAGGGTGCTTAGAGAGGCAAGTTTGATCACCAGCTCAATTTTGCAGTCACTACTTGTCTTCCTTTCCACACCAGTTTTGAAGGCAAGGGCCAGCAGATGGTCTTTGGTTTCAATATTGGTGCAAAAAGGAGTACTGGCGTGTGAGAATTCCGGACACAAAAACATGAATGAGATGGAAAGTGTGGATATTGCAATTAGCAATCTGTTTGTGGATAATGCAAGTGAAGATGTTGAAGCTGAGAAGATTGAATCTGCACAAAGAAAGTTGGAGATTTTGGATGAAAGCATAGAAGGCCTTGAAGATGGGTTGGACGGCTTGTTTAGGCTCTTGATTCACACTAGAGTTTCTTTCCTAAACATACTTTCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

318

Amino Acids

35.42

Weight (kDa)

7.66

Isoelectric Point (pI)

55.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 69 - 314 7.6e-87 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 678
AccII CGCG 1 cut(s) 575
AccIII TCCGGA 1 cut(s) 731
AciI CCGC 4 cut(s) 188, 213, 573, 575
AclWI GGATC 3 cut(s) 57, 534, 561
AcsI RAATTY 1 cut(s) 727
AcuI CTGAAG 2 cut(s) 236, 454
AfaI GTAC 3 cut(s) 230, 335, 714
AfeI AGCGCT 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 678
AjnI CCWGG 1 cut(s) 438
AluBI AGCT 8 cut(s) 118, 127, 247, 256, 281, 468, 615, 818
AluI AGCT 8 cut(s) 118, 127, 247, 256, 281, 468, 615, 818
AlwI GGATC 3 cut(s) 57, 534, 561
Aor13HI TCCGGA 1 cut(s) 731
Aor51HI AGCGCT 1 cut(s) 50
AoxI GGCC 4 cut(s) 214, 540, 669, 874
ApeKI GCWGC 1 cut(s) 509
ApoI RAATTY 1 cut(s) 727
Asp700I GAANNNNTTC 1 cut(s) 387
AspLEI GCGC 2 cut(s) 51, 409
AspS9I GGNCC 1 cut(s) 669
AsuHPI GGTGA 2 cut(s) 592, 601
AsuII TTCGAA 1 cut(s) 412
BbsI GAAGAC 3 cut(s) 424, 450, 631
BbvI GCAGC 1 cut(s) 521
BccI CCATC 5 cut(s) 314, 573, 672, 748, 878
BceAI ACGGC 1 cut(s) 910
BciT130I CCWGG 1 cut(s) 440
BclI TGATCA 1 cut(s) 606
BfaI CTAG 3 cut(s) 278, 557, 921
BfoI RGCGCY 1 cut(s) 52
BisI GCNGC 3 cut(s) 214, 510, 573
BlsI GCNGC 3 cut(s) 215, 511, 574
BmcAI AGTACT 2 cut(s) 335, 714
Bme1390I CCNGG 1 cut(s) 440
BmgT120I GGNCC 1 cut(s) 669
BmrFI CCNGG 1 cut(s) 440
BmsI GCATC 1 cut(s) 352
BpiI GAAGAC 3 cut(s) 424, 450, 631
Bpu14I TTCGAA 1 cut(s) 412
BpuEI CTTGAG 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 564
BsaJI CCNNGG 1 cut(s) 573
BsaWI WCCGGW 1 cut(s) 731
Bsc4I CCNNNNNNNGG 1 cut(s) 678
Bse1I ACTGG 3 cut(s) 426, 653, 720
Bse3DI GCAATG 1 cut(s) 519
Bse8I GATNNNNATC 1 cut(s) 564
BseAI TCCGGA 1 cut(s) 731
BseBI CCWGG 1 cut(s) 440
BseDI CCNNGG 1 cut(s) 573
BseGI GGATG 4 cut(s) 88, 346, 367, 865
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 1 cut(s) 678
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 1 cut(s) 810
BseNI ACTGG 3 cut(s) 426, 653, 720
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 521
BsgI GTGCAG 1 cut(s) 819
Bsh1236I CGCG 1 cut(s) 575
BshFI GGCC 4 cut(s) 216, 542, 671, 876
BsiSI CCGG 1 cut(s) 732
BslI CCNNNNNNNGG 1 cut(s) 678
BsnI GGCC 4 cut(s) 216, 542, 671, 876
Bsp119I TTCGAA 1 cut(s) 412
Bsp13I TCCGGA 1 cut(s) 731
Bsp1407I TGTACA 1 cut(s) 228
Bsp143I GATC 5 cut(s) 62, 83, 526, 553, 606
BspACI CCGC 4 cut(s) 188, 213, 573, 575
BspANI GGCC 4 cut(s) 216, 542, 671, 876
BspCNI CTCAG 1 cut(s) 811
BspEI TCCGGA 1 cut(s) 731
BspFNI CGCG 1 cut(s) 575
BspPI GGATC 3 cut(s) 57, 534, 561
BspQI GCTCTTC 1 cut(s) 4
BspT104I TTCGAA 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 519
BsrGI TGTACA 1 cut(s) 228
BsrI ACTGG 3 cut(s) 426, 653, 720
BssECI CCNNGG 1 cut(s) 573
BssMI GATC 5 cut(s) 62, 83, 526, 553, 606
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 2 cut(s) 100, 449
Bst6I CTCTTC 1 cut(s) 4
BstAUI TGTACA 1 cut(s) 228
BstBI TTCGAA 1 cut(s) 412
BstC8I GCNNGC 1 cut(s) 673
BstDEI CTNAG 3 cut(s) 209, 590, 819
BstDSI CCRYGG 1 cut(s) 573
BstF5I GGATG 4 cut(s) 88, 346, 367, 865
BstFNI CGCG 1 cut(s) 575
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 2 cut(s) 51, 409
BstKTI GATC 5 cut(s) 65, 86, 529, 556, 609
BstMBI GATC 5 cut(s) 62, 83, 526, 553, 606
BstMWI GCNNNNNNNGC 4 cut(s) 20, 124, 253, 873
BstNI CCWGG 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 438
BstUI CGCG 1 cut(s) 575
BstV1I GCAGC 1 cut(s) 521
BstV2I GAAGAC 3 cut(s) 424, 450, 631
BstX2I RGATCY 2 cut(s) 62, 553
BstYI RGATCY 2 cut(s) 62, 553
BsuRI GGCC 4 cut(s) 216, 542, 671, 876
BtgI CCRYGG 1 cut(s) 573
BtsCI GGATG 4 cut(s) 88, 346, 367, 865
BtsIMutI CAGTG 1 cut(s) 454
Cac8I GCNNGC 1 cut(s) 673
CfoI GCGC 2 cut(s) 51, 409
Cfr13I GGNCC 1 cut(s) 669
Cfr42I CCGCGG 1 cut(s) 576
Csp6I GTAC 3 cut(s) 229, 334, 713
CviAII CATG 2 cut(s) 536, 745
CviQI GTAC 3 cut(s) 229, 334, 713
DdeI CTNAG 3 cut(s) 209, 590, 819
DpnI GATC 5 cut(s) 64, 85, 528, 555, 608
DpnII GATC 5 cut(s) 62, 83, 526, 553, 606
Eam1104I CTCTTC 1 cut(s) 4
EarI CTCTTC 1 cut(s) 4
Eco147I AGGCCT 2 cut(s) 542, 876
Eco47III AGCGCT 1 cut(s) 50
Eco57I CTGAAG 2 cut(s) 236, 454
EcoRI GAATTC 1 cut(s) 727
EcoRII CCWGG 1 cut(s) 438
EcoT22I ATGCAT 1 cut(s) 460
FaeI CATG 2 cut(s) 539, 748
FaiI YATR 9 cut(s) 74, 199, 346, 460, 462, 537, 746, 869, 941
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FatI CATG 2 cut(s) 535, 744
FauI CCCGC 1 cut(s) 181
FauNDI CATATG 1 cut(s) 460
FbaI TGATCA 1 cut(s) 606
Fnu4HI GCNGC 3 cut(s) 214, 510, 573
FokI GGATG 4 cut(s) 75, 353, 374, 872
Fsp4HI GCNGC 3 cut(s) 214, 510, 573
FspBI CTAG 3 cut(s) 278, 557, 921
GlaI GCGC 2 cut(s) 50, 408
GluI GCNGC 3 cut(s) 214, 510, 573
HaeII RGCGCY 1 cut(s) 52
HaeIII GGCC 4 cut(s) 216, 542, 671, 876
HapII CCGG 1 cut(s) 732
HhaI GCGC 2 cut(s) 51, 409
Hin1II CATG 2 cut(s) 539, 748
Hin6I GCGC 2 cut(s) 49, 407
HinP1I GCGC 2 cut(s) 49, 407
HindIII AAGCTT 1 cut(s) 466
HinfI GANTC 4 cut(s) 401, 431, 830, 913
HpaII CCGG 1 cut(s) 732
HphI GGTGA 2 cut(s) 592, 601
Hpy166II GTNNAC 2 cut(s) 194, 231
Hpy188I TCNGA 4 cut(s) 62, 104, 473, 531
Hpy188III TCNNGA 4 cut(s) 392, 557, 732, 910
Hpy8I GTNNAC 2 cut(s) 194, 231
HpyAV CCTTC 5 cut(s) 373, 481, 493, 655, 866
HpyCH4III ACNGT 2 cut(s) 100, 449
HpyCH4V TGCA 9 cut(s) 201, 237, 286, 458, 625, 703, 773, 800, 836
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 124, 253, 873
HpyF3I CTNAG 3 cut(s) 209, 590, 819
Hsp92II CATG 2 cut(s) 539, 748
HspAI GCGC 2 cut(s) 49, 407
Kpn2I TCCGGA 1 cut(s) 731
Ksp22I TGATCA 1 cut(s) 606
KspI CCGCGG 1 cut(s) 576
Kzo9I GATC 5 cut(s) 62, 83, 526, 553, 606
LguI GCTCTTC 1 cut(s) 4
LmnI GCTCC 1 cut(s) 244
Lsp1109I GCAGC 1 cut(s) 521
LweI GCATC 1 cut(s) 352
MaeI CTAG 3 cut(s) 278, 557, 921
MaeIII GTNAC 1 cut(s) 627
MalI GATC 5 cut(s) 64, 85, 528, 555, 608
MboI GATC 5 cut(s) 62, 83, 526, 553, 606
MflI RGATCY 2 cut(s) 62, 553
MluCI AATT 6 cut(s) 105, 174, 311, 618, 727, 774
MmeI TCCRAC 3 cut(s) 406, 828, 870
MnlI CCTC 6 cut(s) 133, 227, 235, 532, 576, 589
Mph1103I ATGCAT 1 cut(s) 460
MroI TCCGGA 1 cut(s) 731
MroXI GAANNNNTTC 1 cut(s) 387
MslI CAYNNNNRTG 1 cut(s) 71
MspA1I CMGCKG 1 cut(s) 575
MspI CCGG 1 cut(s) 732
MspR9I CCNGG 1 cut(s) 440
MvaI CCWGG 1 cut(s) 440
MvnI CGCG 1 cut(s) 575
MwoI GCNNNNNNNGC 4 cut(s) 20, 124, 253, 873
NdeI CATATG 1 cut(s) 460
NdeII GATC 5 cut(s) 62, 83, 526, 553, 606
NlaIII CATG 2 cut(s) 539, 748
NmuCI GTSAC 1 cut(s) 627
NsiI ATGCAT 1 cut(s) 460
NspV TTCGAA 1 cut(s) 412
PceI AGGCCT 2 cut(s) 542, 876
PciSI GCTCTTC 1 cut(s) 4
PdmI GAANNNNTTC 1 cut(s) 387
PfeI GAWTC 4 cut(s) 401, 431, 830, 913
PflFI GACNNNGTC 1 cut(s) 449
PflMI CCANNNNNTGG 1 cut(s) 678
PkrI GCNGC 3 cut(s) 215, 511, 574
Psp6I CCWGG 1 cut(s) 438
PspGI CCWGG 1 cut(s) 438
PspPI GGNCC 1 cut(s) 669
PsuI RGATCY 2 cut(s) 62, 553
PsyI GACNNNGTC 1 cut(s) 449
RsaI GTAC 3 cut(s) 230, 335, 714
RsaNI GTAC 3 cut(s) 229, 334, 713
RseI CAYNNNNRTG 1 cut(s) 71
SacII CCGCGG 1 cut(s) 576
SapI GCTCTTC 1 cut(s) 4
SatI GCNGC 3 cut(s) 214, 510, 573
Sau3AI GATC 5 cut(s) 62, 83, 526, 553, 606
Sau96I GGNCC 1 cut(s) 669
ScaI AGTACT 2 cut(s) 335, 714
ScrFI CCNGG 1 cut(s) 440
SfaNI GCATC 1 cut(s) 352
Sfr303I CCGCGG 1 cut(s) 576
SfuI TTCGAA 1 cut(s) 412
SgrBI CCGCGG 1 cut(s) 576
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 6 cut(s) 105, 174, 311, 618, 727, 774
SseBI AGGCCT 2 cut(s) 542, 876
SsiI CCGC 4 cut(s) 188, 213, 573, 575
SspI AATATT 1 cut(s) 696
SspMI CTAG 3 cut(s) 278, 557, 921
StuI AGGCCT 2 cut(s) 542, 876
StyD4I CCNGG 1 cut(s) 438
TaaI ACNGT 2 cut(s) 100, 449
TaqI TCGA 2 cut(s) 391, 412
TasI AATT 6 cut(s) 105, 174, 311, 618, 727, 774
TatI WGTACW 3 cut(s) 228, 333, 712
TauI GCSGC 2 cut(s) 216, 575
TfiI GAWTC 4 cut(s) 401, 431, 830, 913
TscAI CASTG 1 cut(s) 454
TseFI GTSAC 1 cut(s) 627
TseI GCWGC 1 cut(s) 509
Tsp45I GTSAC 1 cut(s) 627
TspDTI ATGAA 8 cut(s) 147, 153, 159, 392, 497, 530, 761, 876
TspRI CASTG 1 cut(s) 454
Tth111I GACNNNGTC 1 cut(s) 449
Van91I CCANNNNNTGG 1 cut(s) 678
XapI RAATTY 1 cut(s) 727
XbaI TCTAGA 1 cut(s) 556
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 3 cut(s) 278, 557, 921
ZrmI AGTACT 2 cut(s) 335, 714
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.