Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007566

Physical Location & Seq

Genomic Coordinates Forward (+)

10089491 .. 10090912

Gene Structure 1422 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG118700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGACAGAGGTGAAGCAGATGAGGCATGACATCGCTTCACTCCTTCAGAAAGGTCAAGAAGTCACTGCTCGTATCTTGGCTCTTCTGCCAATTGGTCGTGGAAAGACTTTTAATCATCGAAAAGCAAAGGAAGGACCAAAAACTTTTGTTAGTGGTGCTACATTACCTCTGCAATCTGTTCAGTTGAATAAGTTCGAGAAAACAAGTGGTGGAGAAAGGGGAAATATGCATTATCAAGACGCACCATCAGCCGCGGAAGCAGCTGTGATATTTGCTAGTGAGGCAATGTCTGCTGCACAAGCTGCTGCAATTCTTGCCAATCAGGCATCATCTCAAGCACCTCACTGTGTTGATACTGTGTCCAAGACTCGAAACATCGATGATCATGAAGAATTAGCTGTTGATGAGGAAGAGACGCTTCTTAGTGATGATGAAATTTTTGCACGCTTTCAGGCGCTGAAGTTGCACAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 ko04144 map00592 map01100 map01110 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

157

Amino Acids

17.11

Weight (kDa)

6.06

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35720
fragaria_vesca	FvH4_1g10720 FvH4_1g10730
malus_domestica	MD02G1121200.v1.1 MD15G1235000.v1.1
prunus_persica	Prupe.7G178100_v2.0.a1
pyrus_communis	pycom15g20920
rosa_chinensis	RchiOBHm_Chr2g0097881 RchiOBHm_Chr2g0097891
rosa_laevigata	RLG00000016743
rosa_multiflora	Rmu_co8303561.1_g000001 Rmu_sc0009572.1_g000010
rosa_roxburghii	Rroxscaffold_2G00144470
rosa_rugosa	Rorug02G0069000
rosa_samantha	Rh2AG115700 Rh2AG115800 Rh2BG118600 Rh2BG118700 Rh2CG120100 Rh2CG120300 Rh2DG119900 Rh2DG120000
rosa_wichuraiana	Rw2G009050 Rw2G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	254
AciI	CCGC	2 cut(s)	252, 254
AcsI	RAATTY	1 cut(s)	435
AcuI	CTGAAG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	187
AluBI	AGCT	3 cut(s)	263, 302, 398
AluI	AGCT	3 cut(s)	263, 302, 398
Alw26I	GTCTC	1 cut(s)	407
AlwNI	CAGNNNCTG	1 cut(s)	457
ApeKI	GCWGC	4 cut(s)	260, 293, 302, 305
ApoI	RAATTY	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	457
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	134
BbvI	GCAGC	4 cut(s)	272, 280, 289, 292
BccI	CCATC	1 cut(s)	253
BclI	TGATCA	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	1 cut(s)	276
BfoI	RGCGCY	1 cut(s)	458
BglI	GCCNNNNNGGC	1 cut(s)	323
BisI	GCNGC	5 cut(s)	252, 261, 294, 303, 306
BlsI	GCNGC	5 cut(s)	253, 262, 295, 304, 307
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmsI	GCATC	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	318
Bsa29I	ATCGAT	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	252
Bse3DI	GCAATG	1 cut(s)	291
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	252
BseMI	GCAATG	1 cut(s)	291
BseXI	GCAGC	4 cut(s)	272, 280, 289, 292
BsgI	GTGCAG	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	254
BshVI	ATCGAT	1 cut(s)	378
BsmAI	GTCTC	1 cut(s)	407
BsmBI	CGTCTC	1 cut(s)	407
Bsp143I	GATC	1 cut(s)	382
BspACI	CCGC	2 cut(s)	252, 254
BspDI	ATCGAT	1 cut(s)	378
BspFNI	CGCG	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	385
BspQI	GCTCTTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	291
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	382
Bst4CI	ACNGT	2 cut(s)	347, 358
Bst6I	CTCTTC	2 cut(s)	87, 405
BstAPI	GCANNNNNTGC	3 cut(s)	290, 302, 314
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	1 cut(s)	422
BstDSI	CCRYGG	1 cut(s)	252
BstFNI	CGCG	1 cut(s)	254
BstH2I	RGCGCY	1 cut(s)	458
BstHHI	GCGC	1 cut(s)	457
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	1 cut(s)	382
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	4 cut(s)	272, 280, 289, 292
Bsu15I	ATCGAT	1 cut(s)	378
BsuTUI	ATCGAT	1 cut(s)	378
BtgI	CCRYGG	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	16
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	63, 343
Cac8I	GCNNGC	1 cut(s)	445
CaiI	CAGNNNCTG	1 cut(s)	457
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	1 cut(s)	457
Cfr13I	GGNCC	1 cut(s)	134
Cfr42I	CCGCGG	1 cut(s)	255
ClaI	ATCGAT	1 cut(s)	378
CseI	GACGC	2 cut(s)	248, 424
CviAII	CATG	2 cut(s)	26, 386
CviJI	RGCY	5 cut(s)	80, 251, 263, 302, 398
CviKI_1	RGCY	5 cut(s)	80, 251, 263, 302, 398
DdeI	CTNAG	1 cut(s)	422
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
Eam1104I	CTCTTC	2 cut(s)	87, 405
EarI	CTCTTC	2 cut(s)	87, 405
Eco47I	GGWCC	1 cut(s)	134
Eco57I	CTGAAG	1 cut(s)	29
EcoT22I	ATGCAT	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	2 cut(s)	29, 389
FaiI	YATR	3 cut(s)	27, 227, 387
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FatI	CATG	2 cut(s)	25, 385
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	5 cut(s)	252, 261, 294, 303, 306
Fsp4HI	GCNGC	5 cut(s)	252, 261, 294, 303, 306
FspBI	CTAG	1 cut(s)	276
GlaI	GCGC	1 cut(s)	456
GluI	GCNGC	5 cut(s)	252, 261, 294, 303, 306
HaeII	RGCGCY	1 cut(s)	458
HgaI	GACGC	2 cut(s)	248, 424
HhaI	GCGC	1 cut(s)	457
Hin1II	CATG	2 cut(s)	29, 389
Hin6I	GCGC	1 cut(s)	455
HinP1I	GCGC	1 cut(s)	455
HinfI	GANTC	1 cut(s)	367
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	4 cut(s)	56, 196, 236, 386
HpyAV	CCTTC	2 cut(s)	53, 125
HpyCH4III	ACNGT	2 cut(s)	347, 358
HpyCH4V	TGCA	6 cut(s)	172, 229, 296, 308, 443, 466
HpyF3I	CTNAG	1 cut(s)	422
Hsp92II	CATG	2 cut(s)	29, 389
HspAI	GCGC	1 cut(s)	455
Ksp22I	TGATCA	1 cut(s)	382
KspI	CCGCGG	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	382
LguI	GCTCTTC	1 cut(s)	87
LpnPI	CCDG	2 cut(s)	308, 437
Lsp1109I	GCAGC	4 cut(s)	272, 280, 289, 292
LweI	GCATC	1 cut(s)	335
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	3 cut(s)	74, 401, 422
MfeI	CAATTG	1 cut(s)	90
MluCI	AATT	4 cut(s)	90, 309, 392, 435
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	5 cut(s)	15, 177, 274, 351, 400
Mph1103I	ATGCAT	1 cut(s)	231
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	1 cut(s)	111
MspA1I	CMGCKG	2 cut(s)	254, 263
MunI	CAATTG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	254
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	2 cut(s)	29, 389
NmuCI	GTSAC	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	231
PagI	TCATGA	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	191
PkrI	GCNGC	5 cut(s)	253, 262, 295, 304, 307
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PspPI	GGNCC	1 cut(s)	134
PstNI	CAGNNNCTG	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	263
SacII	CCGCGG	1 cut(s)	255
SapI	GCTCTTC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	5 cut(s)	252, 261, 294, 303, 306
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	361
SetI	ASST	7 cut(s)	12, 55, 169, 265, 304, 343, 400
SfaNI	GCATC	1 cut(s)	335
Sfr303I	CCGCGG	1 cut(s)	255
SgrBI	CCGCGG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	4 cut(s)	90, 309, 392, 435
SsiI	CCGC	2 cut(s)	252, 254
SspMI	CTAG	1 cut(s)	276
TaaI	ACNGT	2 cut(s)	347, 358
TaqI	TCGA	4 cut(s)	118, 195, 370, 378
TasI	AATT	4 cut(s)	90, 309, 392, 435
TauI	GCSGC	1 cut(s)	254
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TscAI	CASTG	2 cut(s)	70, 350
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	4 cut(s)	260, 293, 302, 305
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	402, 447
TspRI	CASTG	2 cut(s)	70, 350
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	435
XmnI	GAANNNNTTC	1 cut(s)	191
XspI	CTAG	1 cut(s)	276
Zsp2I	ATGCAT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.