Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007566

Physical Location & Seq

Genomic Coordinates Forward (+)

5866422 .. 5867785

Gene Structure 1364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g10730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGTACTGGCTAGAATTAAGGTTGTCCGGAACGACAGACTGACAAAGGATAAACAGATGAGGGATGACATCAAGCGACGCCTGCAGGAAGGTCACGAAGTCGCTGCTCGTATCCTGGTTGAACATTTGACAAGAATCCAGAATTCATTGGCTGCCTATAAACTCATTGAAATCTTCTGCCAATTGGTCGTGGAGAGACTCTTAATCATCAAAAAGCAAAGGCAATGTCTGCCTGATTTGAAAGAAGGGGTTGCTAGTTTGATCTTTGCAGCCCCAAGGTACTATGAGATTCCGGAACTAATGACAGTCAAGAAATTTTTTGAGAAGAAATATGGAAAAGATTTTGTATCTGCAGCTAATGATCTAAGACCCAACTGTGGAGTGAGTAGGAAGATGATTGAGAATCTCTCTATCAAAGCCCCTAGTGGTGAAGCGAAGTTGAAACTCATGAAGGAAATAGCCAAGGAGTGTAGCGTTGAATTGGATGCAACAAAATATGAAAAGGAGCTTTTCGAACCTAGAGAAGAGCTTATAGAAGGACCAACAACTTTTGTTAGTGGTGCTACATTACCTCTGCAATGTGTTCAGTCGAATAAGGTTATGAAAACAAGTTGTGAAGAAAGGGGAAACATGCATTATCAAGACGCACCATCAGCCGCAGAAGCGGCTACCATATTCGCTAGTGAGGCCATGTCTGCTGCACAAGCTGCTGCAATTCTTGCCAATCAGGCATCATCGCAATCACCTCATTGTGTCGATAGTACTATGTCCGAGACTCCAAATGTCGATGATGATGAAGGATTAGTTGTTGATGAGGAAGAAACGCCTTTTAGTGATGAAATGTTCGCACGCTTCCGTGAGCTGAAGTTGCGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 ko04144 map00592 map01100 map01110 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

293

Amino Acids

32.96

Weight (kDa)

5.97

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ist1	PF03398	1 - 159	2.6e-46	Regulator of Vps4 activity in the MVB pathway

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35720
fragaria_vesca	FvH4_1g10720 FvH4_1g10730
malus_domestica	MD02G1121200.v1.1 MD15G1235000.v1.1
prunus_persica	Prupe.7G178100_v2.0.a1
pyrus_communis	pycom15g20920
rosa_chinensis	RchiOBHm_Chr2g0097881 RchiOBHm_Chr2g0097891
rosa_laevigata	RLG00000016743
rosa_multiflora	Rmu_co8303561.1_g000001 Rmu_sc0009572.1_g000010
rosa_roxburghii	Rroxscaffold_2G00144470
rosa_rugosa	Rorug02G0069000
rosa_samantha	Rh2AG115700 Rh2AG115800 Rh2BG118600 Rh2BG118700 Rh2CG120100 Rh2CG120300 Rh2DG119900 Rh2DG120000
rosa_wichuraiana	Rw2G009050 Rw2G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	872
AccIII	TCCGGA	2 cut(s)	27, 292
AciI	CCGC	2 cut(s)	657, 665
AcsI	RAATTY	2 cut(s)	142, 314
AcyI	GRCGYC	1 cut(s)	79
AfaI	GTAC	3 cut(s)	6, 281, 763
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	5 cut(s)	122, 170, 241, 442, 479
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	5 cut(s)	356, 508, 529, 707, 862
AluI	AGCT	5 cut(s)	356, 508, 529, 707, 862
Alw26I	GTCTC	2 cut(s)	190, 767
Aor13HI	TCCGGA	2 cut(s)	27, 292
AoxI	GGCC	1 cut(s)	687
ApeKI	GCWGC	7 cut(s)	104, 152, 269, 353, 698, 707, 710
ApoI	RAATTY	2 cut(s)	142, 314
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
AspLEI	GCGC	1 cut(s)	873
AspS9I	GGNCC	1 cut(s)	539
AsuHPI	GGTGA	2 cut(s)	440, 735
AsuII	TTCGAA	1 cut(s)	513
AvaII	GGWCC	1 cut(s)	539
BbvI	GCAGC	7 cut(s)	91, 139, 281, 365, 685, 694, 697
BccI	CCATC	1 cut(s)	658
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	122
BcoDI	GTCTC	2 cut(s)	190, 767
BfaI	CTAG	5 cut(s)	12, 255, 423, 519, 681
BfmI	CTRYAG	2 cut(s)	83, 351
BfuI	GTATCC	1 cut(s)	122
BglI	GCCNNNNNGGC	1 cut(s)	728
BisI	GCNGC	9 cut(s)	105, 153, 270, 354, 657, 666, 699, 708, 711
BlsI	GCNGC	9 cut(s)	106, 154, 271, 355, 658, 667, 700, 709, 712
BmcAI	AGTACT	1 cut(s)	763
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	539
BmgT120I	GGNCC	1 cut(s)	539
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	2 cut(s)	475, 740
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
Bpu14I	TTCGAA	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	275, 462
BsaWI	WCCGGW	2 cut(s)	27, 292
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse1I	ACTGG	1 cut(s)	12
Bse3DI	GCAATG	2 cut(s)	230, 584
BseAI	TCCGGA	2 cut(s)	27, 292
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	275, 462
BseGI	GGATG	2 cut(s)	70, 490
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMI	GCAATG	2 cut(s)	230, 584
BseNI	ACTGG	1 cut(s)	12
BseXI	GCAGC	7 cut(s)	91, 139, 281, 365, 685, 694, 697
BsgI	GTGCAG	1 cut(s)	684
BshFI	GGCC	1 cut(s)	689
BsiSI	CCGG	2 cut(s)	28, 293
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmAI	GTCTC	2 cut(s)	190, 767
BsnI	GGCC	1 cut(s)	689
Bsp119I	TTCGAA	1 cut(s)	513
Bsp13I	TCCGGA	2 cut(s)	27, 292
Bsp143I	GATC	2 cut(s)	261, 361
BspACI	CCGC	2 cut(s)	657, 665
BspANI	GGCC	1 cut(s)	689
BspEI	TCCGGA	2 cut(s)	27, 292
BspHI	TCATGA	1 cut(s)	447
BspMAI	CTGCAG	2 cut(s)	87, 355
BspQI	GCTCTTC	1 cut(s)	519
BspT104I	TTCGAA	1 cut(s)	513
BsrDI	GCAATG	2 cut(s)	230, 584
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	275, 462
BssMI	GATC	2 cut(s)	261, 361
BssNI	GRCGYC	1 cut(s)	79
BssT1I	CCWWGG	2 cut(s)	275, 462
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	307, 377
Bst6I	CTCTTC	1 cut(s)	519
BstACI	GRCGYC	1 cut(s)	79
BstAPI	GCANNNNNTGC	3 cut(s)	229, 707, 719
BstBI	TTCGAA	1 cut(s)	513
BstC8I	GCNNGC	2 cut(s)	83, 850
BstDEI	CTNAG	1 cut(s)	365
BstF5I	GGATG	2 cut(s)	70, 490
BstHHI	GCGC	1 cut(s)	873
BstKTI	GATC	2 cut(s)	264, 364
BstMAI	GTCTC	2 cut(s)	190, 767
BstMBI	GATC	2 cut(s)	261, 361
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	2 cut(s)	83, 351
BstV1I	GCAGC	7 cut(s)	91, 139, 281, 365, 685, 694, 697
BsuI	GTATCC	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	689
BtgZI	GCGATG	1 cut(s)	720
BtsCI	GGATG	2 cut(s)	70, 490
Cac8I	GCNNGC	2 cut(s)	83, 850
CciI	TCATGA	1 cut(s)	447
CfoI	GCGC	1 cut(s)	873
Cfr13I	GGNCC	1 cut(s)	539
CseI	GACGC	2 cut(s)	87, 653
Csp6I	GTAC	3 cut(s)	5, 280, 762
CviAII	CATG	3 cut(s)	448, 631, 691
CviQI	GTAC	3 cut(s)	5, 280, 762
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	2 cut(s)	263, 363
DpnII	GATC	2 cut(s)	261, 361
Eam1104I	CTCTTC	1 cut(s)	519
EarI	CTCTTC	1 cut(s)	519
Eco130I	CCWWGG	2 cut(s)	275, 462
Eco47I	GGWCC	1 cut(s)	539
EcoRI	GAATTC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	2 cut(s)	275, 462
EcoT22I	ATGCAT	1 cut(s)	636
ErhI	CCWWGG	2 cut(s)	275, 462
FaeI	CATG	3 cut(s)	451, 634, 694
FatI	CATG	3 cut(s)	447, 630, 690
Fnu4HI	GCNGC	9 cut(s)	105, 153, 270, 354, 657, 666, 699, 708, 711
FokI	GGATG	2 cut(s)	77, 497
Fsp4HI	GCNGC	9 cut(s)	105, 153, 270, 354, 657, 666, 699, 708, 711
FspBI	CTAG	5 cut(s)	12, 255, 423, 519, 681
FspI	TGCGCA	1 cut(s)	872
GlaI	GCGC	1 cut(s)	872
GluI	GCNGC	9 cut(s)	105, 153, 270, 354, 657, 666, 699, 708, 711
HaeIII	GGCC	1 cut(s)	689
HapII	CCGG	2 cut(s)	28, 293
HgaI	GACGC	2 cut(s)	87, 653
HhaI	GCGC	1 cut(s)	873
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	3 cut(s)	451, 634, 694
Hin6I	GCGC	1 cut(s)	871
HinP1I	GCGC	1 cut(s)	871
HinfI	GANTC	5 cut(s)	135, 198, 289, 403, 775
HpaII	CCGG	2 cut(s)	28, 293
HphI	GGTGA	2 cut(s)	440, 735
Hpy188I	TCNGA	1 cut(s)	772
Hpy188III	TCNNGA	7 cut(s)	28, 95, 139, 293, 310, 448, 641
Hpy99I	CGWCG	1 cut(s)	81
HpyAV	CCTTC	5 cut(s)	83, 239, 445, 530, 791
HpyCH4III	ACNGT	2 cut(s)	307, 377
HpyCH4V	TGCA	8 cut(s)	85, 269, 353, 488, 577, 634, 701, 713
HpyF3I	CTNAG	1 cut(s)	365
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	3 cut(s)	451, 634, 694
HspAI	GCGC	1 cut(s)	871
Kpn2I	TCCGGA	2 cut(s)	27, 292
Kzo9I	GATC	2 cut(s)	261, 361
LguI	GCTCTTC	1 cut(s)	519
LmnI	GCTCC	1 cut(s)	505
LpnPI	CCDG	9 cut(s)	41, 71, 95, 101, 128, 152, 246, 306, 713
Lsp1109I	GCAGC	7 cut(s)	91, 139, 281, 365, 685, 694, 697
LweI	GCATC	2 cut(s)	475, 740
MaeI	CTAG	5 cut(s)	12, 255, 423, 519, 681
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	2 cut(s)	263, 363
MboI	GATC	2 cut(s)	261, 361
MboII	GAAGA	6 cut(s)	166, 337, 403, 536, 629, 830
MfeI	CAATTG	1 cut(s)	182
MluCI	AATT	6 cut(s)	15, 142, 182, 314, 479, 714
MlyI	GAGTC	2 cut(s)	192, 769
MnlI	CCTC	5 cut(s)	54, 582, 679, 756, 808
Mph1103I	ATGCAT	1 cut(s)	636
MroI	TCCGGA	2 cut(s)	27, 292
MseI	TTAA	2 cut(s)	18, 203
MspI	CCGG	2 cut(s)	28, 293
MspR9I	CCNGG	1 cut(s)	116
MunI	CAATTG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	116
NdeII	GATC	2 cut(s)	261, 361
NlaIII	CATG	3 cut(s)	451, 634, 694
NmuCI	GTSAC	1 cut(s)	92
NsbI	TGCGCA	1 cut(s)	872
NsiI	ATGCAT	1 cut(s)	636
NspI	RCATGY	1 cut(s)	634
NspV	TTCGAA	1 cut(s)	513
PagI	TCATGA	1 cut(s)	447
PciSI	GCTCTTC	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	135, 289, 403
PkrI	GCNGC	9 cut(s)	106, 154, 271, 355, 658, 667, 700, 709, 712
PleI	GAGTC	2 cut(s)	192, 769
PpsI	GAGTC	2 cut(s)	192, 769
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	539
PstI	CTGCAG	2 cut(s)	87, 355
RsaI	GTAC	3 cut(s)	6, 281, 763
RsaNI	GTAC	3 cut(s)	5, 280, 762
SapI	GCTCTTC	1 cut(s)	519
SaqAI	TTAA	2 cut(s)	18, 203
SatI	GCNGC	9 cut(s)	105, 153, 270, 354, 657, 666, 699, 708, 711
Sau3AI	GATC	2 cut(s)	261, 361
Sau96I	GGNCC	1 cut(s)	539
SbfI	CCTGCAGG	1 cut(s)	87
ScaI	AGTACT	1 cut(s)	763
SchI	GAGTC	2 cut(s)	192, 769
ScrFI	CCNGG	1 cut(s)	116
SdaI	CCTGCAGG	1 cut(s)	87
SfaNI	GCATC	2 cut(s)	475, 740
SfcI	CTRYAG	2 cut(s)	83, 351
SfuI	TTCGAA	1 cut(s)	513
SinI	GGWCC	1 cut(s)	539
Sse8387I	CCTGCAGG	1 cut(s)	87
Sse9I	AATT	6 cut(s)	15, 142, 182, 314, 479, 714
SsiI	CCGC	2 cut(s)	657, 665
SspMI	CTAG	5 cut(s)	12, 255, 423, 519, 681
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	2 cut(s)	275, 462
TaaI	ACNGT	2 cut(s)	307, 377
TaqI	TCGA	4 cut(s)	513, 590, 756, 786
TasI	AATT	6 cut(s)	15, 142, 182, 314, 479, 714
TatI	WGTACW	1 cut(s)	761
TauI	GCSGC	2 cut(s)	659, 668
TfiI	GAWTC	3 cut(s)	135, 289, 403
Tru1I	TTAA	2 cut(s)	18, 203
Tru9I	TTAA	2 cut(s)	18, 203
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	7 cut(s)	104, 152, 269, 353, 698, 707, 710
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	6 cut(s)	135, 464, 513, 617, 810, 852
TspGWI	ACGGA	1 cut(s)	845
VpaK11BI	GGWCC	1 cut(s)	539
XapI	RAATTY	2 cut(s)	142, 314
XceI	RCATGY	1 cut(s)	634
XspI	CTAG	5 cut(s)	12, 255, 423, 519, 681
ZrmI	AGTACT	1 cut(s)	763
Zsp2I	ATGCAT	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.