Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007566

Physical Location & Seq

Genomic Coordinates Forward (+)

9102287 .. 9103714

Gene Structure 1428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGTATTGGCTAGAATAAAGGTTGTGTTGAACGAGAGAATGACAGAGGTGAAGCAGATGAGGCATGACATCGCTTCACTCCTTCAGAAAGGTCAAGAAGTCACTGCTCGTATCTTGATTGAACATTTGACAAGAGACCAGAATTCTTTGGCTGCCTATGAACTCATTAGGCTCTTCTGCCAATTGGTCGTGGAAAGACTTTTAATCATCGAAAAGCAAAGGCAATGTCCGCCTGATTTGAAAGAAGGGATTGCTAGTTTGATCTTTGCAGCCCCAAGGTGCTGCGAGATTCCAGAACTAATGACAGTCAGGAATATTTTTGAGAAGAAATATGGAAGAGAATTTGTATCTGCAGCTAGTGATCTAATACCTGAGTGTGGAGTGAATGGAAAGATGATTGAGAATCTCTCTATCAAAACCCCCAGTAGTGAAGTGAAGTTGAAACTCATGAAGGAAATAGCCAATGAGTATAGGGTTGAATGGGATGCAACAAAATATGAAAAGGAGTTTTTCAAGCCTACAGAAGAGCTTATAGAAGGACCAAAAACTTTTGTTAGTGGTGCTACATTACCTCTGCAATCTGTTCAGTTGAACAAGTTCGAGAAAACAAGTGGTGGAGAAAGGGGAAATATGCATTATCAAGACGCACCATCAGCCGTGGAAGCAGCTGTGATATTTGCTAGTGAGGCAATGTCTGCTGCACAAGCTGCTGCAATTCTTGCCAATCAGGCATCATCTCAAGCACCTCATTGTGTTGATACTGTGTCCAAGACTCGAAACATCGATGATCATGAAGAATTAGCTGTTGATGAGGAAGAGACGCTTCTTAGTGATGATGAATTTTTTTTGCACGCTTTCAGGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0030163 GO:0031410 GO:0031982 GO:0032509 GO:0032511 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00592 ko01100 ko01110 ko04144 map00592 map01100 map01110 map04144

Pfam Domains

Protein Families

Ist1

Protein Analysis

288

Amino Acids

32.44

Weight (kDa)

5.27

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ist1	PF03398	1 - 160	5.4e-53	Regulator of Vps4 activity in the MVB pathway

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35720
fragaria_vesca	FvH4_1g10720 FvH4_1g10730
malus_domestica	MD02G1121200.v1.1 MD15G1235000.v1.1
prunus_persica	Prupe.7G178100_v2.0.a1
pyrus_communis	pycom15g20920
rosa_chinensis	RchiOBHm_Chr2g0097881 RchiOBHm_Chr2g0097891
rosa_laevigata	RLG00000016743
rosa_multiflora	Rmu_co8303561.1_g000001 Rmu_sc0009572.1_g000010
rosa_roxburghii	Rroxscaffold_2G00144470
rosa_rugosa	Rorug02G0069000
rosa_samantha	Rh2AG115700 Rh2AG115800 Rh2BG118600 Rh2BG118700 Rh2CG120100 Rh2CG120300 Rh2DG119900 Rh2DG120000
rosa_wichuraiana	Rw2G009050 Rw2G009060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	230
AcsI	RAATTY	3 cut(s)	142, 341, 839
AcuI	CTGAAG	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	7 cut(s)	31, 122, 241, 442, 479, 514, 592
AluBI	AGCT	5 cut(s)	356, 529, 668, 707, 803
AluI	AGCT	5 cut(s)	356, 529, 668, 707, 803
Alw26I	GTCTC	2 cut(s)	129, 812
AlwNI	CAGNNNCTG	1 cut(s)	864
ApeKI	GCWGC	8 cut(s)	152, 269, 282, 353, 665, 698, 707, 710
ApoI	RAATTY	3 cut(s)	142, 341, 839
ArsI	GACNNNNNNTTYG	2 cut(s)	211, 243
Asp700I	GAANNNNTTC	1 cut(s)	596
AspLEI	GCGC	1 cut(s)	864
AspS9I	GGNCC	1 cut(s)	539
AsuHPI	GGTGA	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	539
BbvI	GCAGC	8 cut(s)	139, 269, 281, 365, 677, 685, 694, 697
BccI	CCATC	1 cut(s)	658
BceAI	ACGGC	1 cut(s)	641
BclI	TGATCA	1 cut(s)	787
BcoDI	GTCTC	2 cut(s)	129, 812
BfaI	CTAG	4 cut(s)	12, 255, 357, 681
BfmI	CTRYAG	2 cut(s)	351, 519
BfoI	RGCGCY	1 cut(s)	865
BglI	GCCNNNNNGGC	1 cut(s)	728
BisI	GCNGC	8 cut(s)	153, 270, 283, 354, 666, 699, 708, 711
BlsI	GCNGC	8 cut(s)	154, 271, 284, 355, 667, 700, 709, 712
Bme18I	GGWCC	1 cut(s)	539
BmgT120I	GGNCC	1 cut(s)	539
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	2 cut(s)	475, 740
BmuI	ACTGGG	1 cut(s)	417
BplI	GAGNNNNNCTC	2 cut(s)	392, 424
BpuEI	CTTGAG	1 cut(s)	723
Bsa29I	ATCGAT	1 cut(s)	783
BsaI	GGTCTC	1 cut(s)	129
BsaJI	CCNNGG	2 cut(s)	275, 657
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse1I	ACTGG	1 cut(s)	423
Bse3DI	GCAATG	2 cut(s)	230, 696
BseCI	ATCGAT	1 cut(s)	783
BseDI	CCNNGG	2 cut(s)	275, 657
BseGI	GGATG	1 cut(s)	490
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMI	GCAATG	2 cut(s)	230, 696
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	423
BseXI	GCAGC	8 cut(s)	139, 269, 281, 365, 677, 685, 694, 697
BsgI	GTGCAG	1 cut(s)	684
BshVI	ATCGAT	1 cut(s)	783
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmAI	GTCTC	2 cut(s)	129, 812
BsmBI	CGTCTC	1 cut(s)	812
Bso31I	GGTCTC	1 cut(s)	129
Bsp143I	GATC	3 cut(s)	261, 361, 787
BspACI	CCGC	1 cut(s)	230
BspCNI	CTCAG	1 cut(s)	364
BspDI	ATCGAT	1 cut(s)	783
BspHI	TCATGA	2 cut(s)	447, 790
BspMAI	CTGCAG	1 cut(s)	355
BspQI	GCTCTTC	2 cut(s)	179, 519
BspTNI	GGTCTC	1 cut(s)	129
BsrDI	GCAATG	2 cut(s)	230, 696
BsrI	ACTGG	1 cut(s)	423
BssECI	CCNNGG	2 cut(s)	275, 657
BssMI	GATC	3 cut(s)	261, 361, 787
BssT1I	CCWWGG	1 cut(s)	275
Bst4CI	ACNGT	2 cut(s)	307, 763
Bst6I	CTCTTC	4 cut(s)	179, 331, 519, 810
BstAPI	GCANNNNNTGC	3 cut(s)	695, 707, 719
BstC8I	GCNNGC	1 cut(s)	852
BstDEI	CTNAG	2 cut(s)	372, 827
BstDSI	CCRYGG	1 cut(s)	657
BstF5I	GGATG	1 cut(s)	490
BstH2I	RGCGCY	1 cut(s)	865
BstHHI	GCGC	1 cut(s)	864
BstKTI	GATC	3 cut(s)	264, 364, 790
BstMAI	GTCTC	2 cut(s)	129, 812
BstMBI	GATC	3 cut(s)	261, 361, 787
BstSFI	CTRYAG	2 cut(s)	351, 519
BstV1I	GCAGC	8 cut(s)	139, 269, 281, 365, 677, 685, 694, 697
Bsu15I	ATCGAT	1 cut(s)	783
BsuTUI	ATCGAT	1 cut(s)	783
BtgI	CCRYGG	1 cut(s)	657
BtgZI	GCGATG	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	490
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	852
CaiI	CAGNNNCTG	1 cut(s)	864
CciI	TCATGA	2 cut(s)	447, 790
CfoI	GCGC	1 cut(s)	864
Cfr13I	GGNCC	1 cut(s)	539
ClaI	ATCGAT	1 cut(s)	783
CseI	GACGC	2 cut(s)	653, 829
CviAII	CATG	3 cut(s)	65, 448, 791
DdeI	CTNAG	2 cut(s)	372, 827
DpnI	GATC	3 cut(s)	263, 363, 789
DpnII	GATC	3 cut(s)	261, 361, 787
Eam1104I	CTCTTC	4 cut(s)	179, 331, 519, 810
EarI	CTCTTC	4 cut(s)	179, 331, 519, 810
EciI	GGCGGA	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	68
EcoRI	GAATTC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	275
EcoT22I	ATGCAT	1 cut(s)	636
ErhI	CCWWGG	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	812
FaeI	CATG	3 cut(s)	68, 451, 794
FaiI	YATR	9 cut(s)	66, 159, 333, 449, 471, 498, 533, 632, 792
FalI	AAGNNNNNCTT	2 cut(s)	807, 839
FatI	CATG	3 cut(s)	64, 447, 790
FbaI	TGATCA	1 cut(s)	787
Fnu4HI	GCNGC	8 cut(s)	153, 270, 283, 354, 666, 699, 708, 711
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	8 cut(s)	153, 270, 283, 354, 666, 699, 708, 711
FspBI	CTAG	4 cut(s)	12, 255, 357, 681
GlaI	GCGC	1 cut(s)	863
GluI	GCNGC	8 cut(s)	153, 270, 283, 354, 666, 699, 708, 711
HaeII	RGCGCY	1 cut(s)	865
HgaI	GACGC	2 cut(s)	653, 829
HhaI	GCGC	1 cut(s)	864
Hin1II	CATG	3 cut(s)	68, 451, 794
Hin6I	GCGC	1 cut(s)	862
HinP1I	GCGC	1 cut(s)	862
HinfI	GANTC	3 cut(s)	289, 403, 772
HphI	GGTGA	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	8 cut(s)	95, 115, 293, 310, 448, 601, 641, 791
HpyAV	CCTTC	4 cut(s)	92, 239, 445, 530
HpyCH4III	ACNGT	2 cut(s)	307, 763
HpyCH4V	TGCA	8 cut(s)	269, 353, 488, 577, 634, 701, 713, 850
HpyF3I	CTNAG	2 cut(s)	372, 827
Hsp92II	CATG	3 cut(s)	68, 451, 794
HspAI	GCGC	1 cut(s)	862
Ksp22I	TGATCA	1 cut(s)	787
Kzo9I	GATC	3 cut(s)	261, 361, 787
LguI	GCTCTTC	2 cut(s)	179, 519
LpnPI	CCDG	8 cut(s)	152, 246, 295, 306, 384, 436, 713, 844
Lsp1109I	GCAGC	8 cut(s)	139, 269, 281, 365, 677, 685, 694, 697
LweI	GCATC	2 cut(s)	475, 740
MaeI	CTAG	4 cut(s)	12, 255, 357, 681
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	3 cut(s)	263, 363, 789
MboI	GATC	3 cut(s)	261, 361, 787
MboII	GAAGA	6 cut(s)	166, 337, 348, 536, 806, 827
MfeI	CAATTG	1 cut(s)	182
MluCI	AATT	6 cut(s)	142, 182, 341, 714, 797, 839
MlyI	GAGTC	1 cut(s)	766
MnlI	CCTC	6 cut(s)	40, 54, 582, 679, 756, 805
Mph1103I	ATGCAT	1 cut(s)	636
MroXI	GAANNNNTTC	1 cut(s)	596
MseI	TTAA	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	668
MunI	CAATTG	1 cut(s)	182
NdeII	GATC	3 cut(s)	261, 361, 787
NlaIII	CATG	3 cut(s)	68, 451, 794
NmuCI	GTSAC	1 cut(s)	100
NsiI	ATGCAT	1 cut(s)	636
PagI	TCATGA	2 cut(s)	447, 790
PciSI	GCTCTTC	2 cut(s)	179, 519
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	2 cut(s)	289, 403
PkrI	GCNGC	8 cut(s)	154, 271, 284, 355, 667, 700, 709, 712
PleI	GAGTC	1 cut(s)	766
PpsI	GAGTC	1 cut(s)	766
PspPI	GGNCC	1 cut(s)	539
PstI	CTGCAG	1 cut(s)	355
PstNI	CAGNNNCTG	1 cut(s)	864
PvuII	CAGCTG	1 cut(s)	668
SapI	GCTCTTC	2 cut(s)	179, 519
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	8 cut(s)	153, 270, 283, 354, 666, 699, 708, 711
Sau3AI	GATC	3 cut(s)	261, 361, 787
Sau96I	GGNCC	1 cut(s)	539
SchI	GAGTC	1 cut(s)	766
SfaNI	GCATC	2 cut(s)	475, 740
SfcI	CTRYAG	2 cut(s)	351, 519
SinI	GGWCC	1 cut(s)	539
SmlI	CTYRAG	1 cut(s)	738
SmoI	CTYRAG	1 cut(s)	738
Sse9I	AATT	6 cut(s)	142, 182, 341, 714, 797, 839
SsiI	CCGC	1 cut(s)	230
SspI	AATATT	1 cut(s)	316
SspMI	CTAG	4 cut(s)	12, 255, 357, 681
StyI	CCWWGG	1 cut(s)	275
TaaI	ACNGT	2 cut(s)	307, 763
TaqI	TCGA	4 cut(s)	210, 600, 775, 783
TasI	AATT	6 cut(s)	142, 182, 341, 714, 797, 839
TfiI	GAWTC	2 cut(s)	289, 403
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	8 cut(s)	152, 269, 282, 353, 665, 698, 707, 710
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	5 cut(s)	174, 464, 513, 807, 852
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	539
XapI	RAATTY	3 cut(s)	142, 341, 839
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	4 cut(s)	12, 255, 357, 681
Zsp2I	ATGCAT	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.