AT4G37810

EPIDERMAL PATTERNING FACTOR-like protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004662
Physical Location & Seq
Forward (+)
17780729 .. 17781813
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G37810.1

Sequence Viewer

Length: 387 bp
ATGGTGTGGAGCAGCAACATGTCAAGCTTTCTACTGATTTTGCTCATTCTTAATTCGACCCATTTCAGTCTAATGGCTAATGGTAGACCAGAGCCTGACTCTGTCGAATTCACCAAGAGTGGAGATCAAGATGTGAAGATGATGATGAGAGGTCTAATAGGATCAAGACCACCAAGATGTGAGAGAGTAAGATGTCGTTCTTGTGGTCATTGTGAAGCAATTCAAGTTCCTACAAATCCTCAAACAAAGCTTCACTCTCCTTTAACTACTTCTTCTTCTTCTTCCTCTGAGACTATTCATCTTGACTACACCAGAGGAGATGATAGTACTAATTACAAACCCATGAGCTGGAAATGCAAATGTGGTAACTCTATCTACAACCCTTGA

Protein Analysis

128

Amino Acids

14.32

Weight (kDa)

8.59

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 53 - 128 6.8e-16 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 348
AccI GTMKAC 1 cut(s) 85
AclWI GGATC 1 cut(s) 169
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 1 cut(s) 348
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 1 cut(s) 224
AluBI AGCT 3 cut(s) 27, 250, 348
AluI AGCT 3 cut(s) 27, 250, 348
Alw26I GTCTC 1 cut(s) 284
AlwI GGATC 1 cut(s) 169
AlwNI CAGNNNCTG 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 12
ApoI RAATTY 1 cut(s) 107
Asp700I GAANNNNTTC 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 103
BbvI GCAGC 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 284
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
BmcAI AGTACT 1 cut(s) 328
BplI GAGNNNNNCTC 2 cut(s) 83, 115
Bsc4I CCNNNNNNNGG 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMII CTCAG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 330
BseXI GCAGC 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 348
BsmAI GTCTC 1 cut(s) 284
Bsp143I GATC 2 cut(s) 124, 161
BspCNI CTCAG 1 cut(s) 280
BspPI GGATC 1 cut(s) 169
BssMI GATC 2 cut(s) 124, 161
BstDEI CTNAG 1 cut(s) 288
BstKTI GATC 2 cut(s) 127, 164
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 2 cut(s) 124, 161
BstMWI GCNNNNNNNGC 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 22
BstV1I GCAGC 1 cut(s) 24
CaiI CAGNNNCTG 1 cut(s) 95
Csp6I GTAC 1 cut(s) 327
CviAII CATG 2 cut(s) 19, 343
CviJI RGCY 5 cut(s) 27, 77, 94, 250, 348
CviKI_1 RGCY 5 cut(s) 27, 77, 94, 250, 348
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 1 cut(s) 288
DpnI GATC 2 cut(s) 126, 163
DpnII GATC 2 cut(s) 124, 161
EcoRI GAATTC 1 cut(s) 107
FaeI CATG 2 cut(s) 22, 346
FaiI YATR 2 cut(s) 20, 344
FatI CATG 2 cut(s) 18, 342
FblI GTMKAC 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 13
Hin1II CATG 2 cut(s) 22, 346
HindIII AAGCTT 2 cut(s) 25, 248
HinfI GANTC 1 cut(s) 98
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 3 cut(s) 128, 165, 302
Hpy8I GTNNAC 1 cut(s) 86
HpyCH4V TGCA 1 cut(s) 357
HpyF10VI GCNNNNNNNGC 1 cut(s) 354
HpyF3I CTNAG 1 cut(s) 288
Hsp92II CATG 2 cut(s) 22, 346
Kzo9I GATC 2 cut(s) 124, 161
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 4 cut(s) 102, 108, 325, 334
Lsp1109I GCAGC 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 365
MalI GATC 2 cut(s) 126, 163
MboI GATC 2 cut(s) 124, 161
MboII GAAGA 5 cut(s) 148, 264, 267, 270, 273
MluCI AATT 4 cut(s) 52, 107, 219, 331
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 4 cut(s) 143, 249, 295, 308
MroXI GAANNNNTTC 1 cut(s) 219
MseI TTAA 2 cut(s) 51, 263
MslI CAYNNNNRTG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 354
NdeII GATC 2 cut(s) 124, 161
NlaIII CATG 2 cut(s) 22, 346
NspI RCATGY 1 cut(s) 22
PciI ACATGT 1 cut(s) 18
PdmI GAANNNNTTC 1 cut(s) 219
PflFI GACNNNGTC 1 cut(s) 101
PflMI CCANNNNNTGG 1 cut(s) 348
PkrI GCNGC 1 cut(s) 14
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PscI ACATGT 1 cut(s) 18
PstNI CAGNNNCTG 1 cut(s) 95
PsyI GACNNNGTC 1 cut(s) 101
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
RseI CAYNNNNRTG 1 cut(s) 175
SaqAI TTAA 2 cut(s) 51, 263
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 2 cut(s) 124, 161
ScaI AGTACT 1 cut(s) 328
SchI GAGTC 1 cut(s) 92
SetI ASST 4 cut(s) 29, 154, 252, 350
SmiMI CAYNNNNRTG 1 cut(s) 175
Sse9I AATT 4 cut(s) 52, 107, 219, 331
TaqI TCGA 2 cut(s) 56, 105
TasI AATT 4 cut(s) 52, 107, 219, 331
TatI WGTACW 1 cut(s) 326
Tru1I TTAA 2 cut(s) 51, 263
Tru9I TTAA 2 cut(s) 51, 263
TseI GCWGC 1 cut(s) 12
TspDTI ATGAA 1 cut(s) 287
Tth111I GACNNNGTC 1 cut(s) 101
Van91I CCANNNNNTGG 1 cut(s) 348
XapI RAATTY 1 cut(s) 107
XceI RCATGY 1 cut(s) 22
XmiI GTMKAC 1 cut(s) 85
XmnI GAANNNNTTC 1 cut(s) 219
ZrmI AGTACT 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.