Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004662

Physical Location & Seq

Genomic Coordinates Forward (+)

14178292 .. 14179104

Gene Structure 813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0159200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCTGCGAGAGCTCCGTCAGCTGTAGTAGGCCAAGTGCTCTCACTCCGCCACCCCGTCCGCAATGCCCACCGTGCCTCCTCCCCCGCGCCGCTACGTGGGGCCGCATTTCCCGGGCGGAGGGACCTGGTGCTTCTCTCGCTGACGTGGACGGCCTCGGCTGCTGTGGCGGCGGCCCCGGCAAAAGCGGAGGACATCGGGCTGTTCGGGATACGAAAGAAGCTGAAGGAGGCGGAGAGAGAAACAGAAGTGATAGTGAAGGAAGGGTTCGAGGCGGCGGAGAAGGGCATAGAAACGGCGGAGAAGGGGTTAGAAACGGCTGAGAAGGGCGTAGAAGCGGCGGAGAAGGGGATCGAAACGGTGGCGGGATTTGGCGGGTTGGCGCAGGCGGGTCTGGTGGCGGGAGCCGAGGTTTTGGGGGTCGTGGTTGCCAGCTCCGTCGTCAATGCTATTTTGCGACCGGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048731 GO:0048856 GO:0048869 GO:0090558 GO:0090626 GO:0090627 GO:0090698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPF

Protein Analysis

156

Amino Acids

15.99

Weight (kDa)

6.76

Isoelectric Point (pI)

36.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37810
fragaria_vesca	FvH4_1g18570 FvH4_2g35090 FvH4_2g35090
malus_domestica	MD02G1193400.v1.1 MD08G1108300.v1.1 MD15G1088900.v1.1
prunus_persica	Prupe.1G442900_v2.0.a1 Prupe.6G213400_v2.0.a1 Prupe.6G213400_v2.0.a1
pyrus_communis	pycom02g15710 pycom08g09020 pycom15g08320
rosa_chinensis	RchiOBHm_Chr2g0109291 RchiOBHm_Chr6g0306881
rosa_laevigata	RLG00000010758 RLG00000017730
rosa_multiflora	Rmu_sc0000332.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134340 Rroxscaffold_7G00161390
rosa_rugosa	Rorug02G0159200 Rorug06G0354000
rosa_samantha	Rh2AG210800 Rh2BG221100 Rh2CG213000 Rh2DG217000 Rh6AG465600 Rh6BG435200 Rh6CG480000 Rh6DG467000
rosa_wichuraiana	Rw6G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	89
AclWI	GGATC	1 cut(s)	359
AcuI	CTGAAG	1 cut(s)	245
AfiI	CCNNNNNNNGG	2 cut(s)	98, 120
AjiI	CACGTC	1 cut(s)	147
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	4 cut(s)	14, 23, 223, 435
AluI	AGCT	4 cut(s)	14, 23, 223, 435
Alw21I	GWGCWC	2 cut(s)	16, 42
AlwI	GGATC	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	4 cut(s)	31, 102, 153, 174
ApeKI	GCWGC	2 cut(s)	5, 161
AspLEI	GCGC	2 cut(s)	91, 385
AspS9I	GGNCC	3 cut(s)	102, 124, 175
AsuC2I	CCSGG	3 cut(s)	114, 115, 179
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	16
Bbv12I	GWGCWC	2 cut(s)	16, 42
BbvI	GCAGC	1 cut(s)	148
BceAI	ACGGC	3 cut(s)	168, 312, 333
BciT130I	CCWGG	1 cut(s)	128
BciVI	GTATCC	1 cut(s)	204
BcnI	CCSGG	3 cut(s)	114, 115, 179
BfmI	CTRYAG	1 cut(s)	24
BfuI	GTATCC	1 cut(s)	204
BisI	GCNGC	8 cut(s)	6, 92, 105, 162, 171, 174, 276, 339
BlsI	GCNGC	8 cut(s)	7, 93, 106, 163, 172, 175, 277, 340
Bme1390I	CCNGG	4 cut(s)	114, 115, 128, 179
Bme18I	GGWCC	1 cut(s)	124
BmeT110I	CYCGRG	1 cut(s)	113
BmgBI	CACGTC	1 cut(s)	147
BmgT120I	GGNCC	3 cut(s)	102, 124, 175
BmiI	GGNNCC	4 cut(s)	103, 125, 177, 406
BmrFI	CCNGG	4 cut(s)	114, 115, 128, 179
BpuMI	CCSGG	3 cut(s)	114, 115, 179
BsaAI	YACGTR	1 cut(s)	98
BsaJI	CCNNGG	4 cut(s)	113, 156, 177, 408
BsaWI	WCCGGW	1 cut(s)	460
BsaXI	ACNNNNNCTCC	6 cut(s)	62, 92, 293, 323, 396, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 120
Bse3DI	GCAATG	1 cut(s)	70
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	4 cut(s)	113, 156, 177, 408
BseLI	CCNNNNNNNGG	2 cut(s)	98, 120
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	312
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	89
Bsh1285I	CGRYCG	1 cut(s)	461
BshFI	GGCC	4 cut(s)	33, 104, 155, 176
BsiEI	CGRYCG	1 cut(s)	461
BsiHKAI	GWGCWC	2 cut(s)	16, 42
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	3 cut(s)	114, 179, 461
BslFI	GGGAC	1 cut(s)	137
BslI	CCNNNNNNNGG	2 cut(s)	98, 120
BsmFI	GGGAC	1 cut(s)	137
BsnI	GGCC	4 cut(s)	33, 104, 155, 176
BsoBI	CYCGRG	1 cut(s)	113
Bsp1286I	GDGCHC	2 cut(s)	16, 42
Bsp143I	GATC	1 cut(s)	351
BspANI	GGCC	4 cut(s)	33, 104, 155, 176
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	4 cut(s)	103, 125, 177, 406
BspPI	GGATC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	70
BssECI	CCNNGG	4 cut(s)	113, 156, 177, 408
BssMI	GATC	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	74, 361
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	387, 433
BstDEI	CTNAG	1 cut(s)	321
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	2 cut(s)	91, 385
BstKTI	GATC	1 cut(s)	354
BstMBI	GATC	1 cut(s)	351
BstMCI	CGRYCG	1 cut(s)	461
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 20, 74, 139, 161, 167, 170, 179
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	4 cut(s)	112, 113, 126, 177
BstSFI	CTRYAG	1 cut(s)	24
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	148
BsuI	GTATCC	1 cut(s)	204
BsuRI	GGCC	4 cut(s)	33, 104, 155, 176
BtrI	CACGTC	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	387, 433
CfoI	GCGC	2 cut(s)	91, 385
Cfr13I	GGNCC	3 cut(s)	102, 124, 175
Cfr9I	CCCGGG	1 cut(s)	113
CsiI	ACCWGGT	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
EciI	GGCGGA	6 cut(s)	38, 133, 248, 293, 314, 356
Ecl136II	GAGCTC	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	113
EcoICRI	GAGCTC	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	16
FaiI	YATR	1 cut(s)	290
FaqI	GGGAC	1 cut(s)	137
FauI	CCCGC	5 cut(s)	94, 358, 368, 382, 394
Fnu4HI	GCNGC	8 cut(s)	6, 92, 105, 162, 171, 174, 276, 339
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	8 cut(s)	6, 92, 105, 162, 171, 174, 276, 339
GlaI	GCGC	2 cut(s)	90, 384
GluI	GCNGC	8 cut(s)	6, 92, 105, 162, 171, 174, 276, 339
HaeIII	GGCC	4 cut(s)	33, 104, 155, 176
HapII	CCGG	3 cut(s)	114, 179, 461
HhaI	GCGC	2 cut(s)	91, 385
Hin6I	GCGC	2 cut(s)	89, 383
HinP1I	GCGC	2 cut(s)	89, 383
HpaII	CCGG	3 cut(s)	114, 179, 461
Hpy166II	GTNNAC	1 cut(s)	150
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	1 cut(s)	150
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	7 cut(s)	220, 253, 257, 277, 298, 319, 340
HpyCH4III	ACNGT	2 cut(s)	74, 361
HpyCH4IV	ACGT	2 cut(s)	97, 146
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 20, 74, 139, 161, 167, 170, 179
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	2 cut(s)	97, 146
HspAI	GCGC	2 cut(s)	89, 383
Kzo9I	GATC	1 cut(s)	351
LmnI	GCTCC	3 cut(s)	19, 404, 440
LpnPI	CCDG	7 cut(s)	113, 127, 140, 192, 371, 380, 445
Lsp1109I	GCAGC	1 cut(s)	148
MabI	ACCWGGT	1 cut(s)	126
MaeII	ACGT	2 cut(s)	97, 146
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MhlI	GDGCHC	2 cut(s)	16, 42
MluCI	AATT	1 cut(s)	466
MnlI	CCTC	8 cut(s)	88, 91, 114, 166, 184, 223, 265, 403
MspA1I	CMGCKG	1 cut(s)	23
MspI	CCGG	3 cut(s)	114, 179, 461
MspR9I	CCNGG	4 cut(s)	114, 115, 128, 179
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	8 cut(s)	11, 20, 74, 139, 161, 167, 170, 179
NciI	CCSGG	3 cut(s)	114, 115, 179
NdeII	GATC	1 cut(s)	351
NlaIV	GGNNCC	4 cut(s)	103, 125, 177, 406
NmeAIII	GCCGAG	2 cut(s)	137, 433
PkrI	GCNGC	8 cut(s)	7, 93, 106, 163, 172, 175, 277, 340
Ppu21I	YACGTR	1 cut(s)	98
PpuMI	RGGWCCY	1 cut(s)	124
Psp124BI	GAGCTC	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	4 cut(s)	103, 125, 177, 406
PspPI	GGNCC	3 cut(s)	102, 124, 175
PspPPI	RGGWCCY	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	23
SacI	GAGCTC	1 cut(s)	16
SatI	GCNGC	8 cut(s)	6, 92, 105, 162, 171, 174, 276, 339
Sau3AI	GATC	1 cut(s)	351
Sau96I	GGNCC	3 cut(s)	102, 124, 175
ScrFI	CCNGG	4 cut(s)	114, 115, 128, 179
SduI	GDGCHC	2 cut(s)	16, 42
SetI	ASST	8 cut(s)	16, 25, 100, 129, 149, 225, 414, 437
SexAI	ACCWGGT	1 cut(s)	126
SfcI	CTRYAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	124
SmaI	CCCGGG	1 cut(s)	115
Sse9I	AATT	1 cut(s)	466
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	4 cut(s)	112, 113, 126, 177
TaaI	ACNGT	2 cut(s)	74, 361
TaiI	ACGT	2 cut(s)	100, 149
TaqI	TCGA	2 cut(s)	270, 354
TasI	AATT	1 cut(s)	466
TauI	GCSGC	6 cut(s)	94, 107, 173, 176, 278, 341
TseI	GCWGC	2 cut(s)	5, 161
TspGWI	ACGGA	2 cut(s)	6, 427
TspMI	CCCGGG	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	124
XmaI	CCCGGG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.