Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004662

Physical Location & Seq

Genomic Coordinates Reverse (-)

22126149 .. 22127589

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G213400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCTTGCTTACACCATCACACAATTTCTCTTCTGTTTCTCTTGATTCTGAGCTCAACCCAGTTAACCCAGTTGAGATTCATGGCTGAAGGTAGAGCAATTCACAACAGGGTTGGCATTTCCCAGGCAGGAAATGAAGAGAAGAAAGCGATTGTAAGAGGGCAGATAGGTTCAAGGCCTCCAAGGTGTGAGAGAAGGTGCAGTTCATGTGGGCACTGTGAGGCCATTCAAGTGCCTGCAAACCCCCAACTCAAATCAAGCAACAAAAACTCCTCTTCTGTTGCATCCACCATTGCTTATGCCAGAGGTGATGAAAACTCCAGCAACTACAAGCCCATGAGCTGGAAATGCAAATGTGGAAACTCCATCTTCAACCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048731 GO:0048856 GO:0048869 GO:0090558 GO:0090626 GO:0090627 GO:0090698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPF

Protein Analysis

127

Amino Acids

13.83

Weight (kDa)

9.57

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37810
fragaria_vesca	FvH4_1g18570 FvH4_2g35090 FvH4_2g35090
malus_domestica	MD02G1193400.v1.1 MD08G1108300.v1.1 MD15G1088900.v1.1
prunus_persica	Prupe.1G442900_v2.0.a1 Prupe.6G213400_v2.0.a1 Prupe.6G213400_v2.0.a1
pyrus_communis	pycom02g15710 pycom08g09020 pycom15g08320
rosa_chinensis	RchiOBHm_Chr2g0109291 RchiOBHm_Chr6g0306881
rosa_laevigata	RLG00000010758 RLG00000017730
rosa_multiflora	Rmu_sc0000332.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134340 Rroxscaffold_7G00161390
rosa_rugosa	Rorug02G0159200 Rorug06G0354000
rosa_samantha	Rh2AG210800 Rh2BG221100 Rh2CG213000 Rh2DG217000 Rh6AG465600 Rh6BG435200 Rh6CG480000 Rh6DG467000
rosa_wichuraiana	Rw6G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	342
AgsI	TTSAA	3 cut(s)	174, 230, 373
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	2 cut(s)	54, 342
AluI	AGCT	2 cut(s)	54, 342
Alw21I	GWGCWC	1 cut(s)	56
AoxI	GGCC	2 cut(s)	176, 222
AsuHPI	GGTGA	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	56
BccI	CCATC	2 cut(s)	24, 374
BciT130I	CCWGG	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	125
BmrI	ACTGGG	2 cut(s)	55, 64
BmsI	GCATC	1 cut(s)	293
BmuI	ACTGGG	2 cut(s)	55, 64
BpmI	CTGGAG	1 cut(s)	304
BsaJI	CCNNGG	2 cut(s)	123, 182
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse1I	ACTGG	2 cut(s)	61, 70
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	2 cut(s)	123, 182
BseGI	GGATG	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	2 cut(s)	61, 70
BseRI	GAGGAG	1 cut(s)	262
BseSI	GKGCMC	1 cut(s)	216
BsgI	GTGCAG	1 cut(s)	220
BshFI	GGCC	2 cut(s)	178, 224
BsiHKAI	GWGCWC	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	342
BsnI	GGCC	2 cut(s)	178, 224
Bsp1286I	GDGCHC	2 cut(s)	56, 216
BspANI	GGCC	2 cut(s)	178, 224
BspCNI	CTCAG	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	61, 70
BssECI	CCNNGG	2 cut(s)	123, 182
BssT1I	CCWWGG	1 cut(s)	182
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	3 cut(s)	36, 132, 280
BstC8I	GCNNGC	2 cut(s)	7, 237
BstDEI	CTNAG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	284
BstMWI	GCNNNNNNNGC	1 cut(s)	348
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstSLI	GKGCMC	1 cut(s)	216
BsuRI	GGCC	2 cut(s)	178, 224
BtsCI	GGATG	1 cut(s)	284
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	2 cut(s)	7, 237
CviAII	CATG	3 cut(s)	82, 207, 337
CviJI	RGCY	7 cut(s)	5, 54, 86, 178, 224, 334, 342
CviKI_1	RGCY	7 cut(s)	5, 54, 86, 178, 224, 334, 342
DdeI	CTNAG	1 cut(s)	50
Eam1104I	CTCTTC	3 cut(s)	36, 132, 280
EarI	CTCTTC	3 cut(s)	36, 132, 280
Ecl136II	GAGCTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	182
Eco147I	AGGCCT	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	56
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	182
EcoT38I	GRGCYC	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	3 cut(s)	85, 210, 340
FaiI	YATR	4 cut(s)	83, 208, 300, 338
FatI	CATG	3 cut(s)	81, 206, 336
FokI	GGATG	1 cut(s)	271
FriOI	GRGCYC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	304
HaeIII	GGCC	2 cut(s)	178, 224
Hin1II	CATG	3 cut(s)	85, 210, 340
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	2 cut(s)	46, 78
HpaI	GTTAAC	1 cut(s)	66
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	1 cut(s)	51
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	2 cut(s)	83, 189
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	4 cut(s)	201, 239, 284, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	348
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	3 cut(s)	85, 210, 340
KspAI	GTTAAC	1 cut(s)	66
LweI	GCATC	1 cut(s)	293
MboII	GAAGA	5 cut(s)	23, 149, 154, 267, 361
MhlI	GDGCHC	2 cut(s)	56, 216
MluCI	AATT	2 cut(s)	24, 99
MnlI	CCTC	5 cut(s)	152, 189, 214, 283, 299
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	348
NlaIII	CATG	3 cut(s)	85, 210, 340
PceI	AGGCCT	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	46, 78
PflMI	CCANNNNNTGG	1 cut(s)	342
Psp124BI	GAGCTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
RseI	CAYNNNNRTG	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	56
SaqAI	TTAA	1 cut(s)	65
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	2 cut(s)	56, 216
SetI	ASST	7 cut(s)	56, 94, 172, 188, 200, 310, 344
SfaNI	GCATC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	24, 99
SseBI	AGGCCT	1 cut(s)	178
SstI	GAGCTC	1 cut(s)	56
StuI	AGGCCT	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	182
TaaI	ACNGT	1 cut(s)	218
TasI	AATT	2 cut(s)	24, 99
TfiI	GAWTC	2 cut(s)	46, 78
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	1 cut(s)	221
TspDTI	ATGAA	4 cut(s)	70, 150, 195, 327
TspRI	CASTG	1 cut(s)	221
Van91I	CCANNNNNTGG	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.