Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000332.1

Orthogroup ID

OG0004662

Physical Location & Seq

Genomic Coordinates Forward (+)

15290 .. 15925

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000332.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgggttttcgctacaccaccagttctatcatctttctgatgattttgagctctacccagataagattcatggctgaaagcagagtacttctcaagaaggatgacacttcccagacagtgaatgaagacagtaaggcaagactgagagcacaaattggttcaaggcctccaaggtgtgaaggaaggtgcagctcatgtggcccttgtgcggcaattcaagttcctaacaattttcaagccaaaccaggtaaaaggaactcttcatcagttgtatccaacattgcatatgccagaggaggcgagtattcaagcaactacaagcccatgagttggaaatgcaaatgtggcaccatcatcttcaacccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048731 GO:0048856 GO:0048869 GO:0090558 GO:0090626 GO:0090627 GO:0090698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPF

Protein Analysis

122

Amino Acids

13.5

Weight (kDa)

9.81

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37810
fragaria_vesca	FvH4_1g18570 FvH4_2g35090 FvH4_2g35090
malus_domestica	MD02G1193400.v1.1 MD08G1108300.v1.1 MD15G1088900.v1.1
prunus_persica	Prupe.1G442900_v2.0.a1 Prupe.6G213400_v2.0.a1 Prupe.6G213400_v2.0.a1
pyrus_communis	pycom02g15710 pycom08g09020 pycom15g08320
rosa_chinensis	RchiOBHm_Chr2g0109291 RchiOBHm_Chr6g0306881
rosa_laevigata	RLG00000010758 RLG00000017730
rosa_multiflora	Rmu_sc0000332.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134340 Rroxscaffold_7G00161390
rosa_rugosa	Rorug02G0159200 Rorug06G0354000
rosa_samantha	Rh2AG210800 Rh2BG221100 Rh2CG213000 Rh2DG217000 Rh6AG465600 Rh6BG435200 Rh6CG480000 Rh6DG467000
rosa_wichuraiana	Rw6G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	347
AccB7I	CCANNNNNTGG	1 cut(s)	330
AciI	CCGC	1 cut(s)	209
AfaI	GTAC	1 cut(s)	87
AfiI	CCNNNNNNNGG	2 cut(s)	208, 330
AgsI	TTSAA	5 cut(s)	162, 218, 236, 309, 361
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	2 cut(s)	51, 192
AluI	AGCT	2 cut(s)	51, 192
Alw21I	GWGCWC	2 cut(s)	53, 151
AoxI	GGCC	2 cut(s)	164, 199
ApeKI	GCWGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	2 cut(s)	53, 151
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	246
BciVI	GTATCC	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	283
BisI	GCNGC	2 cut(s)	190, 210
BlsI	GCNGC	2 cut(s)	191, 211
BmcAI	AGTACT	1 cut(s)	87
Bme1390I	CCNGG	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	132
BplI	GAGNNNNNCTC	2 cut(s)	75, 107
BpuEI	CTTGAG	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 330
Bse1I	ACTGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	2 cut(s)	208, 330
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	21
BseRI	GAGGAG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	201
BsgI	GTGCAG	1 cut(s)	208
BshFI	GGCC	2 cut(s)	166, 201
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	2 cut(s)	53, 151
BslI	CCNNNNNNNGG	2 cut(s)	208, 330
BsnI	GGCC	2 cut(s)	166, 201
Bsp1286I	GDGCHC	2 cut(s)	53, 151
BspACI	CCGC	1 cut(s)	209
BspANI	GGCC	2 cut(s)	166, 201
BspCNI	CTCAG	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	349
BspT107I	GGYRCC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	170
BssT1I	CCWWGG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	118, 131
Bst6I	CTCTTC	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 345
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	201
BstV2I	GAAGAC	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	166, 201
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	200
CsiI	ACCWGGT	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	3 cut(s)	70, 195, 325
CviJI	RGCY	7 cut(s)	51, 74, 166, 192, 201, 239, 322
CviKI_1	RGCY	7 cut(s)	51, 74, 166, 192, 201, 239, 322
CviQI	GTAC	1 cut(s)	86
DdeI	CTNAG	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Ecl136II	GAGCTC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	170
Eco147I	AGGCCT	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	170
FaeI	CATG	3 cut(s)	73, 198, 328
FaiI	YATR	5 cut(s)	71, 196, 286, 288, 326
FalI	AAGNNNNNCTT	2 cut(s)	244, 276
FatI	CATG	3 cut(s)	69, 194, 324
FauNDI	CATATG	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	190, 210
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	190, 210
GluI	GCNGC	2 cut(s)	190, 210
HaeIII	GGCC	2 cut(s)	166, 201
Hin1II	CATG	3 cut(s)	73, 198, 328
HinfI	GANTC	1 cut(s)	66
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	1 cut(s)	94
HpyAV	CCTTC	3 cut(s)	91, 173, 177
HpyCH4III	ACNGT	2 cut(s)	118, 131
HpyCH4V	TGCA	3 cut(s)	189, 284, 339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 345
HpyF3I	CTNAG	1 cut(s)	143
Hsp92II	CATG	3 cut(s)	73, 198, 328
LpnPI	CCDG	6 cut(s)	34, 71, 125, 231, 258, 304
Lsp1109I	GCAGC	1 cut(s)	201
MabI	ACCWGGT	1 cut(s)	244
MboII	GAAGA	3 cut(s)	137, 252, 349
MhlI	GDGCHC	2 cut(s)	53, 151
MluCI	AATT	3 cut(s)	153, 213, 229
MmeI	TCCRAC	2 cut(s)	300, 311
MnlI	CCTC	3 cut(s)	177, 287, 290
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	198, 345
NdeI	CATATG	1 cut(s)	286
NlaIII	CATG	3 cut(s)	73, 198, 328
NlaIV	GGNNCC	1 cut(s)	349
PceI	AGGCCT	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	66
PflMI	CCANNNNNTGG	1 cut(s)	330
PkrI	GCNGC	2 cut(s)	191, 211
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	200
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SacI	GAGCTC	1 cut(s)	53
SatI	GCNGC	2 cut(s)	190, 210
Sau96I	GGNCC	1 cut(s)	200
ScaI	AGTACT	1 cut(s)	87
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	2 cut(s)	53, 151
SetI	ASST	5 cut(s)	53, 176, 188, 194, 250
SexAI	ACCWGGT	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	3 cut(s)	153, 213, 229
SseBI	AGGCCT	1 cut(s)	166
SsiI	CCGC	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	53
StuI	AGGCCT	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	244
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	2 cut(s)	118, 131
TasI	AATT	3 cut(s)	153, 213, 229
TatI	WGTACW	1 cut(s)	85
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	66
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	1 cut(s)	189
TspDTI	ATGAA	3 cut(s)	58, 138, 252
TspRI	CASTG	1 cut(s)	123
Van91I	CCANNNNNTGG	1 cut(s)	330
ZrmI	AGTACT	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.