Rroxscaffold_7G00161390

EPIDERMAL PATTERNING FACTOR-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0004662
Physical Location & Seq
Reverse (-)
4171521 .. 4172154
634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161390.1

Sequence Viewer

Length: 465 bp
ATGGGCAGCTCTCAAAACTGGGTTTGTTGGCACAGAAATAGACACATAATCATTCCCATCCTACTAGTTTTGGTTTCAAGCTTCAGTACCCACTTCAGTTTCATAGCACAAGCTACTAGACCAATTCCAACCAAGCTACCTGAAGCAACTACAGGAGGCAATGTTTTGAACGAGGAAAATGTTGGTGGAGGGGAAAGGGTCAACGCTCGTCAAATTGGGTCAAGACCGCCGCAATGCCAGAGTCGGTGCGGTGGTTGCGGGCATTGTGTGGCGGTGCAGGTCCCGGTGGCTCCCGAAGTTCAACAAAGCCACAACAATGGAGCAAAACGCAGCAGCAGCTCTGCTGCCTCTACTAGAAAAACAAGCCCCAAGAGCATTGCTTATTCCAGAGGAGGCGACGAGTTGTCGAATTACAAGCCCATAGGCTGGAGATGCAAGTGTGGAGATTTGTTCTTCAATCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EPF

Protein Analysis

154

Amino Acids

16.65

Weight (kDa)

9.61

Isoelectric Point (pI)

57.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPF PF17181 72 - 154 5.8e-15 Epidermal patterning factor proteins
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 268
AccB7I CCANNNNNTGG 1 cut(s) 426
AciI CCGC 5 cut(s) 227, 230, 249, 258, 272
AcuI CTGAAG 3 cut(s) 67, 79, 162
AfaI GTAC 1 cut(s) 88
AfiI CCNNNNNNNGG 1 cut(s) 426
AgsI TTSAA 4 cut(s) 78, 169, 302, 457
AhdI GACNNNNNGTC 1 cut(s) 403
AhlI ACTAGT 1 cut(s) 64
AluBI AGCT 5 cut(s) 9, 81, 113, 136, 339
AluI AGCT 5 cut(s) 9, 81, 113, 136, 339
ApeKI GCWGC 5 cut(s) 6, 330, 333, 336, 344
AspS9I GGNCC 1 cut(s) 280
AsuC2I CCSGG 1 cut(s) 284
AvaII GGWCC 1 cut(s) 280
BbvI GCAGC 5 cut(s) 18, 331, 342, 345, 348
BccI CCATC 1 cut(s) 65
BcnI CCSGG 1 cut(s) 284
BcuI ACTAGT 1 cut(s) 64
BfaI CTAG 3 cut(s) 65, 117, 354
BfmI CTRYAG 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 6 cut(s) 7, 230, 331, 334, 337, 345
BlsI GCNGC 6 cut(s) 8, 231, 332, 335, 338, 346
Bme1390I CCNGG 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 280
BmeRI GACNNNNNGTC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 2 cut(s) 282, 291
BmrFI CCNGG 1 cut(s) 284
BmrI ACTGGG 1 cut(s) 28
BmsI GCATC 1 cut(s) 422
BmuI ACTGGG 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 448
BpuMI CCSGG 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 426
Bse1I ACTGG 1 cut(s) 23
Bse3DI GCAATG 3 cut(s) 166, 239, 375
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 426
BseMI GCAATG 3 cut(s) 166, 239, 375
BseNI ACTGG 1 cut(s) 23
BseRI GAGGAG 1 cut(s) 405
BseXI GCAGC 5 cut(s) 18, 331, 342, 345, 348
BsgI GTGCAG 1 cut(s) 296
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 1 cut(s) 266
BslI CCNNNNNNNGG 1 cut(s) 426
BsmFI GGGAC 1 cut(s) 266
BspACI CCGC 5 cut(s) 227, 230, 249, 258, 272
BspLI GGNNCC 2 cut(s) 282, 291
BspMI ACCTGC 1 cut(s) 268
BsrDI GCAATG 3 cut(s) 166, 239, 375
BsrI ACTGG 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 260
BstF5I GGATG 1 cut(s) 57
BstMWI GCNNNNNNNGC 4 cut(s) 255, 336, 372, 432
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 1 cut(s) 150
BstV1I GCAGC 5 cut(s) 18, 331, 342, 345, 348
BstXI CCANNNNNNTGG 1 cut(s) 317
BtsCI GGATG 1 cut(s) 57
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 280
Csp6I GTAC 1 cut(s) 87
CviQI GTAC 1 cut(s) 87
DriI GACNNNNNGTC 1 cut(s) 403
Eam1105I GACNNNNNGTC 1 cut(s) 403
Eco47I GGWCC 1 cut(s) 280
Eco57I CTGAAG 3 cut(s) 67, 79, 162
EcoO109I RGGNCCY 1 cut(s) 280
FaiI YATR 3 cut(s) 47, 104, 422
FaqI GGGAC 1 cut(s) 266
FauI CCCGC 1 cut(s) 251
Fnu4HI GCNGC 6 cut(s) 7, 230, 331, 334, 337, 345
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 6 cut(s) 7, 230, 331, 334, 337, 345
FspBI CTAG 3 cut(s) 65, 117, 354
GluI GCNGC 6 cut(s) 7, 230, 331, 334, 337, 345
GsuI CTGGAG 1 cut(s) 448
HapII CCGG 1 cut(s) 284
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 79
HinfI GANTC 1 cut(s) 241
HpaII CCGG 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 202
Hpy188III TCNNGA 3 cut(s) 222, 293, 387
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 1 cut(s) 401
HpyCH4V TGCA 2 cut(s) 277, 435
HpyF10VI GCNNNNNNNGC 4 cut(s) 255, 336, 372, 432
LmnI GCTCC 2 cut(s) 295, 320
LpnPI CCDG 8 cut(s) 4, 138, 153, 251, 263, 297, 400, 412
Lsp1109I GCAGC 5 cut(s) 18, 331, 342, 345, 348
LweI GCATC 1 cut(s) 422
MaeI CTAG 3 cut(s) 65, 117, 354
MboII GAAGA 1 cut(s) 445
MluCI AATT 3 cut(s) 123, 213, 409
MlyI GAGTC 1 cut(s) 250
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 6 cut(s) 149, 166, 182, 358, 383, 386
MslI CAYNNNNRTG 1 cut(s) 315
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 284
MwoI GCNNNNNNNGC 4 cut(s) 255, 336, 372, 432
NciI CCSGG 1 cut(s) 284
NlaIV GGNNCC 2 cut(s) 282, 291
PflMI CCANNNNNTGG 1 cut(s) 426
PkrI GCNGC 6 cut(s) 8, 231, 332, 335, 338, 346
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
PspN4I GGNNCC 2 cut(s) 282, 291
PspPI GGNCC 1 cut(s) 280
PspPPI RGGWCCY 1 cut(s) 280
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
RseI CAYNNNNRTG 1 cut(s) 315
SatI GCNGC 6 cut(s) 7, 230, 331, 334, 337, 345
Sau96I GGNCC 1 cut(s) 280
SchI GAGTC 1 cut(s) 250
ScrFI CCNGG 1 cut(s) 284
SetI ASST 7 cut(s) 11, 83, 115, 138, 142, 282, 341
SfaNI GCATC 1 cut(s) 422
SfcI CTRYAG 1 cut(s) 150
SinI GGWCC 1 cut(s) 280
SmiMI CAYNNNNRTG 1 cut(s) 315
SpeI ACTAGT 1 cut(s) 64
Sse9I AATT 3 cut(s) 123, 213, 409
SsiI CCGC 5 cut(s) 227, 230, 249, 258, 272
SspMI CTAG 3 cut(s) 65, 117, 354
StyD4I CCNGG 1 cut(s) 282
TaqI TCGA 1 cut(s) 407
TasI AATT 3 cut(s) 123, 213, 409
TauI GCSGC 1 cut(s) 232
TseI GCWGC 5 cut(s) 6, 330, 333, 336, 344
TspDTI ATGAA 1 cut(s) 91
Van91I CCANNNNNTGG 1 cut(s) 426
VpaK11BI GGWCC 1 cut(s) 280
XspI CTAG 3 cut(s) 65, 117, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.