Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004662

Physical Location & Seq

Genomic Coordinates Forward (+)

10912865 .. 10913821

Gene Structure 957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGGTTTTCGATACACCACCAGTTCTATCATCTTTCTGGTGATTTTGAGCTCTACCCAAATAAGATTCATGGCTGAAGGCAGAGCACTTCTCAAGAAGGATGACACTTCCCAGATAGTGAATGAAGACAATAAGGCAAGAGTGAGAGCACAAATTGGTTCAAGGCCTCCAAAGTGTGAAGGAATGTGCAGCTCATGTGGCCCTTGCGAGGCAATTCAAGTTCCTAACAATTTTCAAGCCAAACCAGGTAAGAGGAACTCTTCTACAGTTGTATCCACCATTGCTTATGCCAGAGGAAACGAGTACTCGAGCAACTACAAACCCATGAGCTGGAAATGCAAATGTGGCACCATCATCTTCAACCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009987 GO:0010016 GO:0010052 GO:0010103 GO:0010374 GO:0030154 GO:0032501 GO:0032502 GO:0048367 GO:0048731 GO:0048856 GO:0048869 GO:0090558 GO:0090626 GO:0090627 GO:0090698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPF

Protein Analysis

123

Amino Acids

13.49

Weight (kDa)

9.54

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPF	PF17181	52 - 122	3.2e-17	Epidermal patterning factor proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37810
fragaria_vesca	FvH4_1g18570 FvH4_2g35090 FvH4_2g35090
malus_domestica	MD02G1193400.v1.1 MD08G1108300.v1.1 MD15G1088900.v1.1
prunus_persica	Prupe.1G442900_v2.0.a1 Prupe.6G213400_v2.0.a1 Prupe.6G213400_v2.0.a1
pyrus_communis	pycom02g15710 pycom08g09020 pycom15g08320
rosa_chinensis	RchiOBHm_Chr2g0109291 RchiOBHm_Chr6g0306881
rosa_laevigata	RLG00000010758 RLG00000017730
rosa_multiflora	Rmu_sc0000332.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134340 Rroxscaffold_7G00161390
rosa_rugosa	Rorug02G0159200 Rorug06G0354000
rosa_samantha	Rh2AG210800 Rh2BG221100 Rh2CG213000 Rh2DG217000 Rh6AG465600 Rh6BG435200 Rh6CG480000 Rh6DG467000
rosa_wichuraiana	Rw6G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	347
AccB7I	CCANNNNNTGG	1 cut(s)	330
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	2 cut(s)	208, 330
AgsI	TTSAA	4 cut(s)	162, 218, 236, 361
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	3 cut(s)	51, 192, 330
AluI	AGCT	3 cut(s)	51, 192, 330
Alw21I	GWGCWC	3 cut(s)	53, 88, 151
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	2 cut(s)	164, 199
ApeKI	GCWGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	307
BaeI	ACNNNNGTAYC	2 cut(s)	255, 288
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	3 cut(s)	53, 88, 151
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	246
BciVI	GTATCC	1 cut(s)	283
BfmI	CTRYAG	1 cut(s)	264
BfuI	GTATCC	1 cut(s)	283
BisI	GCNGC	1 cut(s)	190
BlsI	GCNGC	1 cut(s)	191
BmcAI	AGTACT	1 cut(s)	305
Bme1390I	CCNGG	1 cut(s)	246
BmeT110I	CYCGRG	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	132
BplI	GAGNNNNNCTC	2 cut(s)	75, 107
BpuEI	CTTGAG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 330
Bse1I	ACTGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	2 cut(s)	208, 330
BseMI	GCAATG	1 cut(s)	279
BseNI	ACTGG	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	201
BsgI	GTGCAG	1 cut(s)	208
BshFI	GGCC	2 cut(s)	166, 201
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	3 cut(s)	53, 88, 151
BsiHKCI	CYCGRG	1 cut(s)	307
BslI	CCNNNNNNNGG	2 cut(s)	208, 330
BsnI	GGCC	2 cut(s)	166, 201
BsoBI	CYCGRG	1 cut(s)	307
Bsp1286I	GDGCHC	3 cut(s)	53, 88, 151
BspANI	GGCC	2 cut(s)	166, 201
BspLI	GGNNCC	1 cut(s)	349
BspT107I	GGYRCC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	3 cut(s)	198, 336, 345
BstNI	CCWGG	1 cut(s)	246
BstSCI	CCNGG	1 cut(s)	244
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	201
BstV2I	GAAGAC	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	166, 201
BtsCI	GGATG	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	200
CsiI	ACCWGGT	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	3 cut(s)	70, 195, 325
CviJI	RGCY	7 cut(s)	51, 74, 166, 192, 201, 239, 330
CviKI_1	RGCY	7 cut(s)	51, 74, 166, 192, 201, 239, 330
CviQI	GTAC	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Ecl136II	GAGCTC	1 cut(s)	51
Eco147I	AGGCCT	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	53
FaeI	CATG	3 cut(s)	73, 198, 328
FaiI	YATR	4 cut(s)	71, 196, 288, 326
FatI	CATG	3 cut(s)	69, 194, 324
Fnu4HI	GCNGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	190
GluI	GCNGC	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	166, 201
Hin1II	CATG	3 cut(s)	73, 198, 328
HinfI	GANTC	1 cut(s)	66
HphI	GGTGA	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	94
HpyAV	CCTTC	3 cut(s)	71, 91, 173
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	2 cut(s)	189, 339
HpyF10VI	GCNNNNNNNGC	3 cut(s)	198, 336, 345
Hsp92II	CATG	3 cut(s)	73, 198, 328
LpnPI	CCDG	7 cut(s)	23, 34, 125, 231, 258, 304, 316
Lsp1109I	GCAGC	1 cut(s)	201
MabI	ACCWGGT	1 cut(s)	244
MboII	GAAGA	3 cut(s)	137, 252, 349
MhlI	GDGCHC	3 cut(s)	53, 88, 151
MluCI	AATT	3 cut(s)	153, 213, 229
MnlI	CCTC	4 cut(s)	177, 202, 246, 287
MspR9I	CCNGG	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	3 cut(s)	198, 336, 345
NlaIII	CATG	3 cut(s)	73, 198, 328
NlaIV	GGNNCC	1 cut(s)	349
PaeR7I	CTCGAG	1 cut(s)	307
PceI	AGGCCT	1 cut(s)	166
PfeI	GAWTC	1 cut(s)	66
PflMI	CCANNNNNTGG	1 cut(s)	330
PkrI	GCNGC	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	200
PspXI	VCTCGAGB	1 cut(s)	307
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SacI	GAGCTC	1 cut(s)	53
SatI	GCNGC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	200
ScaI	AGTACT	1 cut(s)	305
ScrFI	CCNGG	1 cut(s)	246
SduI	GDGCHC	3 cut(s)	53, 88, 151
SetI	ASST	4 cut(s)	53, 194, 250, 332
SexAI	ACCWGGT	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	264
Sfr274I	CTCGAG	1 cut(s)	307
SlaI	CTCGAG	1 cut(s)	307
SmlI	CTYRAG	2 cut(s)	92, 307
SmoI	CTYRAG	2 cut(s)	92, 307
Sse9I	AATT	3 cut(s)	153, 213, 229
SseBI	AGGCCT	1 cut(s)	166
SstI	GAGCTC	1 cut(s)	53
StuI	AGGCCT	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	244
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	2 cut(s)	10, 308
TasI	AATT	3 cut(s)	153, 213, 229
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	1 cut(s)	66
TseI	GCWGC	1 cut(s)	189
TspDTI	ATGAA	2 cut(s)	58, 138
Van91I	CCANNNNNTGG	1 cut(s)	330
XhoI	CTCGAG	1 cut(s)	307
ZrmI	AGTACT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.