Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004662

Physical Location & Seq

Genomic Coordinates Reverse (-)

5218763 .. 5219331

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g08320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGGCGGCTCTCAAAATTGCATCTTTTGCCACAGAAATAGAAATATTTACATTTCCATCCTCCTGTTCTTGGTTTCGAGCTCGACCCATCTGATTTTCATGGCTGAAGGTGGTAGACCAATTTCCAGCAAACCAAGTGAGTTTTCTCCGGCAAGAGTTCTTCAGGAAAATAAAGCAGGGGTGGCGGTCAGCGCTCGTCAAATAGGGTCAGTGCGGCCGAGCTGCGAGCGGAGGTGCAGCGCTTGCGGGCGTTGCGTGGCGGTTCAGGTTCCAGTTACTCCTCAAGTTAATGAAATCAGAAGCCATGGAAGCAGCTCCTCTGTTTCTTTTTCCAAAACTGCCCCAAATAACGTAGCTTACTCCAGAGGAGATGACATTACAAATTATAAGCCAATGAGCTGGAAATGCAAGTGTGGGAATTTGCTCTACAATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EPF

Protein Analysis

146

Amino Acids

15.77

Weight (kDa)

9.56

Isoelectric Point (pI)

63.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37810
fragaria_vesca	FvH4_1g18570 FvH4_2g35090 FvH4_2g35090
malus_domestica	MD02G1193400.v1.1 MD08G1108300.v1.1 MD15G1088900.v1.1
prunus_persica	Prupe.1G442900_v2.0.a1 Prupe.6G213400_v2.0.a1 Prupe.6G213400_v2.0.a1
pyrus_communis	pycom02g15710 pycom08g09020 pycom15g08320
rosa_chinensis	RchiOBHm_Chr2g0109291 RchiOBHm_Chr6g0306881
rosa_laevigata	RLG00000010758 RLG00000017730
rosa_multiflora	Rmu_sc0000332.1_g000002
rosa_roxburghii	Rroxscaffold_2G00134340 Rroxscaffold_7G00161390
rosa_rugosa	Rorug02G0159200 Rorug06G0354000
rosa_samantha	Rh2AG210800 Rh2BG221100 Rh2CG213000 Rh2DG217000 Rh6AG465600 Rh6BG435200 Rh6CG480000 Rh6DG467000
rosa_wichuraiana	Rw6G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AccBSI	CCGCTC	1 cut(s)	229
AccI	GTMKAC	1 cut(s)	115
AciI	CCGC	6 cut(s)	6, 185, 214, 229, 246, 260
AcoI	YGGCCR	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	2 cut(s)	126, 146
AfeI	AGCGCT	2 cut(s)	193, 241
AfiI	CCNNNNNNNGG	1 cut(s)	70
AjuI	GAANNNNNNNTTGG	2 cut(s)	127, 159
AluBI	AGCT	5 cut(s)	81, 222, 315, 356, 399
AluI	AGCT	5 cut(s)	81, 222, 315, 356, 399
Alw21I	GWGCWC	1 cut(s)	83
Aor51HI	AGCGCT	2 cut(s)	193, 241
AoxI	GGCC	1 cut(s)	215
ApeKI	GCWGC	3 cut(s)	222, 237, 312
ApoI	RAATTY	1 cut(s)	418
AspLEI	GCGC	2 cut(s)	194, 242
BanII	GRGCYC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	3 cut(s)	209, 249, 324
BccI	CCATC	2 cut(s)	65, 96
BfoI	RGCGCY	2 cut(s)	195, 243
BisI	GCNGC	5 cut(s)	7, 215, 223, 238, 313
BlsI	GCNGC	5 cut(s)	8, 216, 224, 239, 314
BmiI	GGNNCC	1 cut(s)	270
BmsI	GCATC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	346
BpuEI	CTTGAG	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	272
BseDI	CCNNGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	3 cut(s)	270, 307, 381
BseX3I	CGGCCG	1 cut(s)	215
BseXI	GCAGC	3 cut(s)	209, 249, 324
BsgI	GTGCAG	1 cut(s)	256
Bsh1285I	CGRYCG	1 cut(s)	218
BshFI	GGCC	1 cut(s)	217
BsiEI	CGRYCG	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	70
BsnI	GGCC	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	6 cut(s)	6, 185, 214, 229, 246, 260
BspANI	GGCC	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	270
BsrBI	CCGCTC	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	304
BstAPI	GCANNNNNTGC	2 cut(s)	27, 243
BstC8I	GCNNGC	3 cut(s)	227, 244, 248
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	57
BstH2I	RGCGCY	2 cut(s)	195, 243
BstHHI	GCGC	2 cut(s)	194, 242
BstMCI	CGRYCG	1 cut(s)	218
BstMWI	GCNNNNNNNGC	7 cut(s)	27, 182, 191, 243, 252, 309, 405
BstV1I	GCAGC	3 cut(s)	209, 249, 324
BstXI	CCANNNNNNTGG	1 cut(s)	399
BstZI	CGGCCG	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	217
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	3 cut(s)	227, 244, 248
CfoI	GCGC	2 cut(s)	194, 242
CviAII	CATG	2 cut(s)	100, 305
EaeI	YGGCCR	1 cut(s)	215
EagI	CGGCCG	1 cut(s)	215
Ecl136II	GAGCTC	1 cut(s)	81
EclXI	CGGCCG	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	304
Eco24I	GRGCYC	1 cut(s)	83
Eco47III	AGCGCT	2 cut(s)	193, 241
Eco52I	CGGCCG	1 cut(s)	215
Eco53kI	GAGCTC	1 cut(s)	81
Eco57I	CTGAAG	2 cut(s)	126, 146
EcoICRI	GAGCTC	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	304
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	2 cut(s)	103, 308
FaiI	YATR	3 cut(s)	101, 306, 387
FatI	CATG	2 cut(s)	99, 304
FauI	CCCGC	1 cut(s)	239
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	5 cut(s)	7, 215, 223, 238, 313
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	83
Fsp4HI	GCNGC	5 cut(s)	7, 215, 223, 238, 313
GlaI	GCGC	2 cut(s)	193, 241
GluI	GCNGC	5 cut(s)	7, 215, 223, 238, 313
GsuI	CTGGAG	1 cut(s)	346
HaeII	RGCGCY	2 cut(s)	195, 243
HaeIII	GGCC	1 cut(s)	217
HapII	CCGG	1 cut(s)	149
HhaI	GCGC	2 cut(s)	194, 242
Hin1II	CATG	2 cut(s)	103, 308
Hin6I	GCGC	2 cut(s)	192, 240
HinP1I	GCGC	2 cut(s)	192, 240
HpaII	CCGG	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	2 cut(s)	93, 299
Hpy188III	TCNNGA	2 cut(s)	164, 363
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	101
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	3 cut(s)	21, 237, 408
HpyF10VI	GCNNNNNNNGC	7 cut(s)	27, 182, 191, 243, 252, 309, 405
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	103, 308
HspAI	GCGC	2 cut(s)	192, 240
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	9 cut(s)	77, 139, 149, 162, 162, 251, 285, 376, 385
Lsp1109I	GCAGC	3 cut(s)	209, 249, 324
LweI	GCATC	1 cut(s)	30
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	274
MbiI	CCGCTC	1 cut(s)	229
MboII	GAAGA	1 cut(s)	152
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	4 cut(s)	16, 120, 382, 418
MnlI	CCTC	5 cut(s)	71, 225, 291, 328, 359
MseI	TTAA	1 cut(s)	288
MspI	CCGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	7 cut(s)	27, 182, 191, 243, 252, 309, 405
NcoI	CCATGG	1 cut(s)	304
NlaIII	CATG	2 cut(s)	103, 308
NlaIV	GGNNCC	1 cut(s)	270
NmeAIII	GCCGAG	1 cut(s)	243
PkrI	GCNGC	5 cut(s)	8, 216, 224, 239, 314
PsiI	TTATAA	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	270
SacI	GAGCTC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	5 cut(s)	7, 215, 223, 238, 313
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	9 cut(s)	83, 112, 224, 236, 270, 317, 354, 358, 401
SfaNI	GCATC	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	282
SmoI	CTYRAG	1 cut(s)	282
Sse9I	AATT	4 cut(s)	16, 120, 382, 418
SsiI	CCGC	6 cut(s)	6, 185, 214, 229, 246, 260
SspI	AATATT	1 cut(s)	46
SstI	GAGCTC	1 cut(s)	83
StyI	CCWWGG	1 cut(s)	304
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	2 cut(s)	77, 83
TasI	AATT	4 cut(s)	16, 120, 382, 418
TauI	GCSGC	2 cut(s)	9, 217
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	1 cut(s)	216
TseI	GCWGC	3 cut(s)	222, 237, 312
TspDTI	ATGAA	2 cut(s)	88, 306
TspRI	CASTG	1 cut(s)	216
XapI	RAATTY	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.