AT4G38070

At4g38062-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005834
Physical Location & Seq
Forward (+)
17881504 .. 17882778
1275 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G38070.1

Sequence Viewer

Length: 771 bp
ATGGTTTTACTTCACCATGTAAGTCTCTCTCATTATCAAAATTCATCTTCTCTGTTTTCTTCCTCCTCTGAATCAATCCTTTGTTTATTTCTTGTGTTGTGTGTGATGCAGTTAGAGCAAGGGATGCGTCCGATTTCACGATGTTACAATCCAACCGCGTATTCGACAACAATGGGAAGAAGTTTCTTCGCAGGTGCAGCCACAAGCAGCAAGCTATTCTCCAGAGGTTTCTCAGTCACAAAGCCAAAATCTAAAACCGAATCTAAAGAAGTTGCTGCAAAGAAACATAGTGACGCAGAGAGAAGGAGACGGCTTCGGATTAATTCCCAGTTTGCAACTCTCCGCACCATTCTTCCAAACTTAGTCAAACAAGATAAAGCATCTGTGCTTGGAGAGACTGTCAGGTACTTCAATGAATTGAAAAAGATGGTTCAAGACATACCAACCACACCATCTTTAGAAGACAACTTGAGATTGGACCACTGTAATAACAACAGAGACTTGGCAAGAGTCGTGTTCAGTTGTAGCGACAGAGAAGGGCTAATGTCGGAGGTTGCAGAGTCAATGAAAGCAGTGAAAGCAAAGGCGGTGAGAGCTGAGATCATGACAGTAGGTGGAAGAACCAAGTGTGCCTTGTTTGTTCAAGGTGTCAATGGGAATGAAGGATTGGTGAAGCTCAAGAAATCGTTGAAACTTGTAGTGAATGGTAAATCATCATCAGAGGCGAAAAACAACAACAATGGAGGATCGTTGTTAATTCAGCAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.3

Weight (kDa)

9.87

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 94 - 141 5e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 182
AccII CGCG 1 cut(s) 158
AciI CCGC 3 cut(s) 156, 343, 587
AclWI GGATC 1 cut(s) 754
AcsI RAATTY 1 cut(s) 40
AfaI GTAC 1 cut(s) 407
AgsI TTSAA 5 cut(s) 412, 421, 434, 644, 691
AjuI GAANNNNNNNTTGG 4 cut(s) 145, 177, 650, 682
AluBI AGCT 3 cut(s) 214, 596, 676
AluI AGCT 3 cut(s) 214, 596, 676
Alw26I GTCTC 4 cut(s) 29, 301, 389, 492
AlwI GGATC 1 cut(s) 754
ApeKI GCWGC 4 cut(s) 197, 207, 275, 763
ApoI RAATTY 1 cut(s) 40
AseI ATTAAT 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 478
AsuHPI GGTGA 3 cut(s) 5, 601, 682
AvaII GGWCC 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 3 cut(s) 209, 219, 262
BccI CCATC 2 cut(s) 421, 460
BceAI ACGGC 1 cut(s) 326
BcoDI GTCTC 4 cut(s) 29, 301, 389, 492
BfuAI ACCTGC 1 cut(s) 182
BisI GCNGC 4 cut(s) 198, 208, 276, 764
BlsI GCNGC 4 cut(s) 199, 209, 277, 765
Bme18I GGWCC 1 cut(s) 478
BmgT120I GGNCC 1 cut(s) 478
BmrI ACTGGG 1 cut(s) 322
BmsI GCATC 3 cut(s) 96, 114, 389
BmuI ACTGGG 1 cut(s) 322
BpiI GAAGAC 1 cut(s) 468
BpmI CTGGAG 1 cut(s) 205
BpuEI CTTGAG 2 cut(s) 490, 662
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bse1I ACTGG 1 cut(s) 328
BseGI GGATG 1 cut(s) 129
BseMII CTCAG 2 cut(s) 246, 588
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 3 cut(s) 209, 219, 262
BsgI GTGCAG 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 158
BsmAI GTCTC 4 cut(s) 29, 301, 389, 492
BsmBI CGTCTC 1 cut(s) 301
Bsp143I GATC 2 cut(s) 600, 746
BspACI CCGC 3 cut(s) 156, 343, 587
BspCNI CTCAG 2 cut(s) 245, 589
BspFNI CGCG 1 cut(s) 158
BspHI TCATGA 1 cut(s) 603
BspMI ACCTGC 1 cut(s) 182
BspPI GGATC 1 cut(s) 754
BsrI ACTGG 1 cut(s) 328
BssMI GATC 2 cut(s) 600, 746
Bst4CI ACNGT 3 cut(s) 400, 485, 610
BstAPI GCANNNNNTGC 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 3 cut(s) 232, 361, 597
BstF5I GGATG 1 cut(s) 129
BstFNI CGCG 1 cut(s) 158
BstKTI GATC 2 cut(s) 603, 749
BstMAI GTCTC 4 cut(s) 29, 301, 389, 492
BstMBI GATC 2 cut(s) 600, 746
BstMWI GCNNNNNNNGC 5 cut(s) 115, 124, 197, 578, 593
BstUI CGCG 1 cut(s) 158
BstV1I GCAGC 3 cut(s) 209, 219, 262
BstV2I GAAGAC 1 cut(s) 468
BtsCI GGATG 1 cut(s) 129
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 2 cut(s) 481, 579
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 212
CciI TCATGA 1 cut(s) 603
Cfr13I GGNCC 1 cut(s) 478
CseI GACGC 2 cut(s) 116, 302
Csp6I GTAC 1 cut(s) 406
CviAII CATG 2 cut(s) 17, 604
CviJI RGCY 7 cut(s) 200, 214, 244, 313, 541, 596, 676
CviKI_1 RGCY 7 cut(s) 200, 214, 244, 313, 541, 596, 676
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 3 cut(s) 232, 361, 597
DpnI GATC 2 cut(s) 602, 748
DpnII GATC 2 cut(s) 600, 746
Eco47I GGWCC 1 cut(s) 478
Esp3I CGTCTC 1 cut(s) 301
FaeI CATG 2 cut(s) 20, 607
FaiI YATR 4 cut(s) 18, 288, 440, 605
FalI AAGNNNNNCTT 2 cut(s) 617, 649
FatI CATG 2 cut(s) 16, 603
Fnu4HI GCNGC 4 cut(s) 198, 208, 276, 764
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 4 cut(s) 198, 208, 276, 764
GluI GCNGC 4 cut(s) 198, 208, 276, 764
GsuI CTGGAG 1 cut(s) 205
HgaI GACGC 2 cut(s) 116, 302
Hin1II CATG 2 cut(s) 20, 607
HinfI GANTC 4 cut(s) 71, 260, 510, 560
HphI GGTGA 3 cut(s) 5, 601, 682
Hpy188I TCNGA 5 cut(s) 70, 132, 318, 550, 721
Hpy188III TCNNGA 5 cut(s) 138, 222, 434, 604, 679
HpyAV CCTTC 3 cut(s) 297, 530, 656
HpyCH4III ACNGT 3 cut(s) 400, 485, 610
HpyCH4V TGCA 5 cut(s) 109, 197, 278, 335, 557
HpyF10VI GCNNNNNNNGC 5 cut(s) 115, 124, 197, 578, 593
HpyF3I CTNAG 3 cut(s) 232, 361, 597
Hsp92II CATG 2 cut(s) 20, 607
Kzo9I GATC 2 cut(s) 600, 746
LpnPI CCDG 4 cut(s) 177, 235, 341, 388
Lsp1109I GCAGC 3 cut(s) 209, 219, 262
LweI GCATC 3 cut(s) 96, 114, 389
MaeIII GTNAC 3 cut(s) 143, 235, 290
MalI GATC 2 cut(s) 602, 748
MboI GATC 2 cut(s) 600, 746
MboII GAAGA 7 cut(s) 39, 51, 178, 189, 344, 473, 630
MluCI AATT 4 cut(s) 40, 322, 416, 756
MlyI GAGTC 2 cut(s) 519, 569
MmeI TCCRAC 2 cut(s) 176, 528
MnlI CCTC 6 cut(s) 73, 76, 218, 544, 715, 737
MseI TTAA 2 cut(s) 321, 755
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 5 cut(s) 115, 124, 197, 578, 593
NdeII GATC 2 cut(s) 600, 746
NlaIII CATG 2 cut(s) 20, 607
NmuCI GTSAC 2 cut(s) 235, 290
PagI TCATGA 1 cut(s) 603
PaqCI CACCTGC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 71, 260
PkrI GCNGC 4 cut(s) 199, 209, 277, 765
PleI GAGTC 2 cut(s) 518, 568
PpsI GAGTC 2 cut(s) 518, 568
PshBI ATTAAT 1 cut(s) 321
PspPI GGNCC 1 cut(s) 478
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SaqAI TTAA 2 cut(s) 321, 755
SatI GCNGC 4 cut(s) 198, 208, 276, 764
Sau3AI GATC 2 cut(s) 600, 746
Sau96I GGNCC 1 cut(s) 478
SchI GAGTC 2 cut(s) 519, 569
SetI ASST 9 cut(s) 196, 216, 229, 407, 555, 598, 616, 649, 678
SfaNI GCATC 3 cut(s) 96, 114, 389
SinI GGWCC 1 cut(s) 478
SmlI CTYRAG 2 cut(s) 469, 677
SmoI CTYRAG 2 cut(s) 469, 677
Sse9I AATT 4 cut(s) 40, 322, 416, 756
SsiI CCGC 3 cut(s) 156, 343, 587
TaaI ACNGT 3 cut(s) 400, 485, 610
TaqI TCGA 1 cut(s) 164
TasI AATT 4 cut(s) 40, 322, 416, 756
TfiI GAWTC 2 cut(s) 71, 260
Tru1I TTAA 2 cut(s) 321, 755
Tru9I TTAA 2 cut(s) 321, 755
TscAI CASTG 2 cut(s) 488, 579
TseFI GTSAC 2 cut(s) 235, 290
TseI GCWGC 4 cut(s) 197, 207, 275, 763
Tsp45I GTSAC 2 cut(s) 235, 290
TspDTI ATGAA 4 cut(s) 33, 429, 581, 675
TspRI CASTG 2 cut(s) 488, 579
VpaK11BI GGWCC 1 cut(s) 478
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.