Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005834

Physical Location & Seq

Genomic Coordinates Reverse (-)

20522104 .. 20523007

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G198500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCTGTCCATCCCAAGTTATTATCCGAAGCAAATCAGCTTCCCAAAAGGCCAAGGAGTATTCCCAGTGAATACTATCTACTCCAAAAGCTTCTTTAAACCAAAATCAAAGGCAGAGACCAAAGTAATTGCAGCCAAGAAACACAGTGACTCAGAGAGAAGACGAAGGATGCGAATCAATGGTCAATATGCCACTCTTCGTACCGTCCTCCCAAACTTGATCAAAATGGACAAGGCATCTGTGCTTGCAGAGACGGTCCGGCAAGTAAGGGAGCTGAAGAGGGCGGTGGCAGAAGTGGAAGCAGCATGTCGCCACGGTGACAGTGATGAATGTGTTTTACCAGGTGGGGTTGACAAGTTGAGTTTGGAACAGTGTGATGGAGAGCAAGAAGGGCTTGTGAAGGCCACATTGAGCTGTGGCGACAGGCCGGGGCTGATATCGGACATGACAAGGGCACTGAGCTCTGTGAAAGGGAGGTTGGTGAGGGCTGAGATGGTGATAGTGGGTGGAAGGAGTAAAAATGTGTTGTGGATTCAAGGGTTGGGTGATGGAAAAGAAGGGATGGTGGCGCTACGGAGGGCATTGAAGGTGGTTATTGACAGGCCTATTTTTGCAGGGCTTCGTAAGAGGTTTCATCTTCCTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

216

Amino Acids

23.82

Weight (kDa)

10.05

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38070
fragaria_vesca	FvH4_1g19780 FvH4_5g35460
malus_domestica	MD15G1314000.v1.1 MD15G1384300.v1.1
prunus_persica	Prupe.1G530800_v2.0.a1 Prupe.6G198500_v2.0.a1
pyrus_communis	pycom15g34430
rosa_chinensis	RchiOBHm_Chr2g0111351 RchiOBHm_Chr7g0236841
rosa_laevigata	RLG00000001057 RLG00000017888
rosa_multiflora	Rmu_sc0002867.1_g000019 Rmu_ssc0000075.1_g000002
rosa_roxburghii	Rroxscaffold_2G00132470 Rroxscaffold_3G00224780
rosa_rugosa	Rorug02G0172900 Rorug07G0299800
rosa_samantha	Rh2AG226100 Rh2BG237900 Rh2CG229100 Rh2DG233600 Rh7AG455000 Rh7BG426200 Rh7CG473700 Rh7DG443000
rosa_wichuraiana	Rw2G017460 Rw7G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	202
AgsI	TTSAA	2 cut(s)	536, 586
AjnI	CCWGG	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	461, 493
AluBI	AGCT	5 cut(s)	39, 90, 274, 414, 462
AluI	AGCT	5 cut(s)	39, 90, 274, 414, 462
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	2 cut(s)	110, 245
AoxI	GGCC	4 cut(s)	49, 402, 425, 602
ApeKI	GCWGC	2 cut(s)	131, 302
ArsI	GACNNNNNNTTYG	2 cut(s)	166, 198
AspLEI	GCGC	1 cut(s)	571
AspS9I	GGNCC	1 cut(s)	256
AsuC2I	CCSGG	1 cut(s)	429
AsuHPI	GGTGA	4 cut(s)	329, 493, 508, 557
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	2 cut(s)	143, 314
BccI	CCATC	5 cut(s)	17, 371, 487, 542, 556
BciT130I	CCWGG	1 cut(s)	342
BclI	TGATCA	1 cut(s)	219
BcnI	CCSGG	1 cut(s)	429
BcoDI	GTCTC	2 cut(s)	110, 245
BfoI	RGCGCY	1 cut(s)	572
BisI	GCNGC	2 cut(s)	132, 303
BlsI	GCNGC	2 cut(s)	133, 304
Bme1390I	CCNGG	2 cut(s)	342, 429
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmrFI	CCNGG	2 cut(s)	342, 429
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	159, 245
BmuI	ACTGGG	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	166
BpuMI	CCSGG	1 cut(s)	429
BsaBI	GATNNNNATC	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	52, 313, 428
Bse1I	ACTGG	1 cut(s)	65
Bse8I	GATNNNNATC	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	3 cut(s)	52, 313, 428
BseGI	GGATG	3 cut(s)	9, 174, 567
BseJI	GATNNNNATC	1 cut(s)	173
BseMII	CTCAG	3 cut(s)	165, 449, 480
BseNI	ACTGG	1 cut(s)	65
BseSI	GKGCMC	1 cut(s)	457
BseXI	GCAGC	2 cut(s)	143, 314
BshFI	GGCC	4 cut(s)	51, 404, 427, 604
BsiHKAI	GWGCWC	1 cut(s)	464
BsiSI	CCGG	2 cut(s)	259, 428
BsmAI	GTCTC	2 cut(s)	110, 245
BsmBI	CGTCTC	1 cut(s)	245
BsnI	GGCC	4 cut(s)	51, 404, 427, 604
Bso31I	GGTCTC	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	457, 464
Bsp143I	GATC	1 cut(s)	219
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	4 cut(s)	51, 404, 427, 604
BspCNI	CTCAG	3 cut(s)	164, 450, 481
BspTNI	GGTCTC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	3 cut(s)	52, 313, 428
BssMI	GATC	1 cut(s)	219
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	6 cut(s)	146, 205, 256, 317, 323, 372
Bst6I	CTCTTC	2 cut(s)	201, 272
BstC8I	GCNNGC	1 cut(s)	246
BstDEI	CTNAG	4 cut(s)	151, 458, 489, 642
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	3 cut(s)	9, 174, 567
BstH2I	RGCGCY	1 cut(s)	572
BstHHI	GCGC	1 cut(s)	571
BstKTI	GATC	1 cut(s)	222
BstMAI	GTCTC	2 cut(s)	110, 245
BstMBI	GATC	1 cut(s)	219
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	2 cut(s)	340, 427
BstSLI	GKGCMC	1 cut(s)	457
BstV1I	GCAGC	2 cut(s)	143, 314
BstV2I	GAAGAC	1 cut(s)	166
BsuRI	GGCC	4 cut(s)	51, 404, 427, 604
BtgI	CCRYGG	1 cut(s)	313
BtsCI	GGATG	3 cut(s)	9, 174, 567
BtsIMutI	CAGTG	5 cut(s)	72, 151, 328, 377, 455
Cac8I	GCNNGC	1 cut(s)	246
CfoI	GCGC	1 cut(s)	571
Cfr13I	GGNCC	1 cut(s)	256
CpoI	CGGWCCG	1 cut(s)	256
CsiI	ACCWGGT	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	201
CspI	CGGWCCG	1 cut(s)	256
CviAII	CATG	2 cut(s)	306, 445
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	4 cut(s)	151, 458, 489, 642
DpnI	GATC	1 cut(s)	221
DpnII	GATC	1 cut(s)	219
DraI	TTTAAA	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	201, 272
EarI	CTCTTC	2 cut(s)	201, 272
Ecl136II	GAGCTC	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	52
Eco147I	AGGCCT	1 cut(s)	604
Eco24I	GRGCYC	1 cut(s)	464
Eco31I	GGTCTC	1 cut(s)	110
Eco32I	GATATC	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	256
Eco53kI	GAGCTC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	296
EcoICRI	GAGCTC	1 cut(s)	462
EcoRII	CCWGG	1 cut(s)	340
EcoRV	GATATC	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	464
ErhI	CCWWGG	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	2 cut(s)	309, 448
FaiI	YATR	3 cut(s)	189, 307, 446
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FatI	CATG	2 cut(s)	305, 444
FbaI	TGATCA	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	132, 303
FokI	GGATG	2 cut(s)	181, 574
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	2 cut(s)	132, 303
GlaI	GCGC	1 cut(s)	570
GluI	GCNGC	2 cut(s)	132, 303
HaeII	RGCGCY	1 cut(s)	572
HaeIII	GGCC	4 cut(s)	51, 404, 427, 604
HapII	CCGG	2 cut(s)	259, 428
HhaI	GCGC	1 cut(s)	571
Hin1II	CATG	2 cut(s)	309, 448
Hin6I	GCGC	1 cut(s)	569
HinP1I	GCGC	1 cut(s)	569
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	3 cut(s)	149, 174, 532
HpaII	CCGG	2 cut(s)	259, 428
HphI	GGTGA	4 cut(s)	329, 493, 508, 557
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	3 cut(s)	27, 154, 442
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	6 cut(s)	159, 383, 394, 504, 551, 580
HpyCH4III	ACNGT	6 cut(s)	146, 205, 256, 317, 323, 372
HpyCH4V	TGCA	3 cut(s)	131, 248, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
HpyF3I	CTNAG	4 cut(s)	151, 458, 489, 642
Hsp92II	CATG	2 cut(s)	309, 448
HspAI	GCGC	1 cut(s)	569
Ksp22I	TGATCA	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	219
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	8 cut(s)	78, 272, 327, 354, 409, 441, 586, 600
Lsp1109I	GCAGC	2 cut(s)	143, 314
LweI	GCATC	2 cut(s)	159, 245
MabI	ACCWGGT	1 cut(s)	340
MaeIII	GTNAC	2 cut(s)	146, 317
MalI	GATC	1 cut(s)	221
MboI	GATC	1 cut(s)	219
MboII	GAAGA	4 cut(s)	171, 188, 289, 629
MhlI	GDGCHC	2 cut(s)	457, 464
MluCI	AATT	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	6 cut(s)	218, 273, 468, 477, 570, 621
MseI	TTAA	1 cut(s)	96
MspI	CCGG	2 cut(s)	259, 428
MspR9I	CCNGG	2 cut(s)	342, 429
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	1 cut(s)	391
NciI	CCSGG	1 cut(s)	429
NdeII	GATC	1 cut(s)	219
NlaIII	CATG	2 cut(s)	309, 448
NmuCI	GTSAC	2 cut(s)	146, 317
NspI	RCATGY	1 cut(s)	309
PceI	AGGCCT	1 cut(s)	604
PcsI	WCGNNNNNNNCGW	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	174, 532
PkrI	GCNGC	2 cut(s)	133, 304
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	464
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	256
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
Rsr2I	CGGWCCG	1 cut(s)	256
RsrII	CGGWCCG	1 cut(s)	256
SacI	GAGCTC	1 cut(s)	464
SaqAI	TTAA	1 cut(s)	96
SatI	GCNGC	2 cut(s)	132, 303
Sau3AI	GATC	1 cut(s)	219
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	2 cut(s)	342, 429
SduI	GDGCHC	2 cut(s)	457, 464
SetI	ASST	9 cut(s)	41, 92, 276, 346, 416, 464, 479, 591, 632
SexAI	ACCWGGT	1 cut(s)	340
SfaNI	GCATC	2 cut(s)	159, 245
SinI	GGWCC	1 cut(s)	256
Sse9I	AATT	1 cut(s)	126
SseBI	AGGCCT	1 cut(s)	604
SsiI	CCGC	1 cut(s)	284
SstI	GAGCTC	1 cut(s)	464
StuI	AGGCCT	1 cut(s)	604
StyD4I	CCNGG	2 cut(s)	340, 427
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	6 cut(s)	146, 205, 256, 317, 323, 372
TasI	AATT	1 cut(s)	126
TfiI	GAWTC	2 cut(s)	174, 532
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	5 cut(s)	72, 151, 328, 377, 462
TseFI	GTSAC	2 cut(s)	146, 317
TseI	GCWGC	2 cut(s)	131, 302
Tsp45I	GTSAC	2 cut(s)	146, 317
TspDTI	ATGAA	2 cut(s)	342, 623
TspGWI	ACGGA	1 cut(s)	589
TspRI	CASTG	5 cut(s)	72, 151, 328, 377, 462
VpaK11BI	GGWCC	1 cut(s)	256
XceI	RCATGY	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.