Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005834

Physical Location & Seq

Genomic Coordinates Reverse (-)

34152962 .. 34153760

Gene Structure 799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g34430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCTTCCTTTCCAGAACTACTCTGAGTCGGAGCGACAGAGCTGGTCCAGTCAAAACCGCAACAACAACAACCTAATGGACGGCGCAGATTCCATCCTGAGCTCGGCGGCATCGGCGACGGAGACCGCCAAGTCAGCAGAAGCATCCACCAGCCACAAGGAAGCCGAGAGGCGGCGCAGGCAGCGTATCAACGCCCACCTCTCCACCCTCCGTACTCTCCTCCCCAACACCACCCGGACGGACAAGGCGTCGTTGCTGGCGGAGGTGGTGCAGCACGTGAGGGAGCTGAGGAGGCAGGCTGATGACCTGGCGGGCCAAGGCCGGGCCGGGTCGGAGGCCTGGCCGTTTCCGGGCGAATCGGACGAGGTGACGCTGAACTACTGCAACGGCGGGACCAAGCTGTTGAAGGCGACACTGAGCTGCGAAGACAGACCGGGTCTAAACCGGGACTTGGTACAGGCGATAAGGTCTGTTCGGGCAAGGGCTGTGCGGGCTGAGATGATGACGGTCGGCAGTCGGACCAAGAATGTGGTGGTGATGCAGTGGGCTGGCGGTGGCGGGGAGGAGGGGTTTAGGGCTTTGAAGCGGGCATTGAAGGCTGTGGTGGAGAATCGGACCTCCGGTTCTAGGCTGGGTAAGTTGGTTTCGGGTAATAACCGGGGTCGGGTTTATGAGGATGCTGACGAGGATATGAGTTTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

235

Amino Acids

25.77

Weight (kDa)

9.54

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38070
fragaria_vesca	FvH4_1g19780 FvH4_5g35460
malus_domestica	MD15G1314000.v1.1 MD15G1384300.v1.1
prunus_persica	Prupe.1G530800_v2.0.a1 Prupe.6G198500_v2.0.a1
pyrus_communis	pycom15g34430
rosa_chinensis	RchiOBHm_Chr2g0111351 RchiOBHm_Chr7g0236841
rosa_laevigata	RLG00000001057 RLG00000017888
rosa_multiflora	Rmu_sc0002867.1_g000019 Rmu_ssc0000075.1_g000002
rosa_roxburghii	Rroxscaffold_2G00132470 Rroxscaffold_3G00224780
rosa_rugosa	Rorug02G0172900 Rorug07G0299800
rosa_samantha	Rh2AG226100 Rh2BG237900 Rh2CG229100 Rh2DG233600 Rh7AG455000 Rh7BG426200 Rh7CG473700 Rh7DG443000
rosa_wichuraiana	Rw2G017460 Rw7G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	130
AcoI	YGGCCR	1 cut(s)	341
AcvI	CACGTG	1 cut(s)	277
AcyI	GRCGYC	1 cut(s)	248
AfaI	GTAC	2 cut(s)	214, 456
AfiI	CCNNNNNNNGG	7 cut(s)	103, 171, 322, 350, 451, 627, 664
AgsI	TTSAA	3 cut(s)	406, 583, 595
AhdI	GACNNNNNGTC	1 cut(s)	247
AjnI	CCWGG	2 cut(s)	306, 338
AloI	GAACNNNNNNTCC	2 cut(s)	607, 639
AluBI	AGCT	5 cut(s)	42, 102, 286, 400, 420
AluI	AGCT	5 cut(s)	42, 102, 286, 400, 420
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	1 cut(s)	116
AoxI	GGCC	5 cut(s)	313, 319, 324, 336, 341
ApeKI	GCWGC	3 cut(s)	181, 271, 420
AspLEI	GCGC	2 cut(s)	86, 177
AspS9I	GGNCC	6 cut(s)	45, 313, 324, 393, 519, 615
AsuC2I	CCSGG	7 cut(s)	235, 323, 328, 351, 435, 446, 659
AsuHPI	GGTGA	2 cut(s)	379, 547
AvaII	GGWCC	4 cut(s)	45, 393, 519, 615
BanII	GRGCYC	1 cut(s)	104
BbrPI	CACGTG	1 cut(s)	277
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	104
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	3 cut(s)	193, 283, 407
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	3 cut(s)	97, 328, 403
BciT130I	CCWGG	2 cut(s)	308, 340
BcnI	CCSGG	7 cut(s)	235, 323, 328, 351, 435, 446, 659
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	627
BisI	GCNGC	5 cut(s)	108, 173, 182, 272, 421
BlsI	GCNGC	5 cut(s)	109, 174, 183, 273, 422
Bme1390I	CCNGG	9 cut(s)	235, 308, 323, 328, 340, 351, 435, 446, 659
Bme18I	GGWCC	4 cut(s)	45, 393, 519, 615
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmgT120I	GGNCC	6 cut(s)	45, 313, 324, 393, 519, 615
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	9 cut(s)	235, 308, 323, 328, 340, 351, 435, 446, 659
BmsI	GCATC	4 cut(s)	119, 152, 528, 667
BpiI	GAAGAC	1 cut(s)	432
Bpu10I	CCTNAGC	2 cut(s)	98, 287
BpuMI	CCSGG	7 cut(s)	235, 323, 328, 351, 435, 446, 659
BsaAI	YACGTR	1 cut(s)	277
BsaHI	GRCGYC	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	316, 658
BsaWI	WCCGGW	1 cut(s)	620
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bsc4I	CCNNNNNNNGG	7 cut(s)	103, 171, 322, 350, 451, 627, 664
Bse1I	ACTGG	1 cut(s)	48
BseBI	CCWGG	2 cut(s)	308, 340
BseDI	CCNNGG	2 cut(s)	316, 658
BseGI	GGATG	3 cut(s)	93, 143, 682
BseLI	CCNNNNNNNGG	7 cut(s)	103, 171, 322, 350, 451, 627, 664
BseMII	CTCAG	5 cut(s)	15, 89, 278, 407, 486
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	3 cut(s)	209, 304, 578
BseXI	GCAGC	3 cut(s)	193, 283, 407
BseYI	CCCAGC	1 cut(s)	631
BsgI	GTGCAG	1 cut(s)	290
Bsh1285I	CGRYCG	1 cut(s)	510
BshFI	GGCC	5 cut(s)	315, 321, 326, 338, 343
BsiEI	CGRYCG	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	8 cut(s)	235, 322, 327, 350, 434, 445, 621, 658
BslFI	GGGAC	2 cut(s)	406, 461
BslI	CCNNNNNNNGG	7 cut(s)	103, 171, 322, 350, 451, 627, 664
BsmAI	GTCTC	1 cut(s)	116
BsmFI	GGGAC	2 cut(s)	406, 461
BsnI	GGCC	5 cut(s)	315, 321, 326, 338, 343
Bso31I	GGTCTC	1 cut(s)	116
Bsp1286I	GDGCHC	1 cut(s)	104
BspANI	GGCC	5 cut(s)	315, 321, 326, 338, 343
BspCNI	CTCAG	5 cut(s)	16, 90, 279, 408, 487
BspLI	GGNNCC	1 cut(s)	394
BspTNI	GGTCTC	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	316, 658
BssNI	GRCGYC	1 cut(s)	248
BssT1I	CCWWGG	1 cut(s)	316
Bst2UI	CCWGG	2 cut(s)	308, 340
Bst4CI	ACNGT	1 cut(s)	508
BstACI	GRCGYC	1 cut(s)	248
BstBAI	YACGTR	1 cut(s)	277
BstC8I	GCNNGC	7 cut(s)	179, 258, 297, 313, 492, 550, 588
BstDEI	CTNAG	5 cut(s)	24, 98, 287, 416, 495
BstF5I	GGATG	3 cut(s)	93, 143, 682
BstHHI	GCGC	2 cut(s)	86, 177
BstMAI	GTCTC	1 cut(s)	116
BstMCI	CGRYCG	1 cut(s)	510
BstMWI	GCNNNNNNNGC	7 cut(s)	113, 134, 178, 181, 292, 491, 596
BstNI	CCWGG	2 cut(s)	308, 340
BstSCI	CCNGG	9 cut(s)	233, 306, 321, 326, 338, 349, 433, 444, 657
BstV1I	GCAGC	3 cut(s)	193, 283, 407
BstV2I	GAAGAC	1 cut(s)	432
BstXI	CCANNNNNNTGG	1 cut(s)	529
BsuRI	GGCC	5 cut(s)	315, 321, 326, 338, 343
BtsCI	GGATG	3 cut(s)	93, 143, 682
BtsI	GCAGTG	1 cut(s)	548
BtsIMutI	CAGTG	2 cut(s)	413, 548
Cac8I	GCNNGC	7 cut(s)	179, 258, 297, 313, 492, 550, 588
CfoI	GCGC	2 cut(s)	86, 177
Cfr13I	GGNCC	6 cut(s)	45, 313, 324, 393, 519, 615
CseI	GACGC	2 cut(s)	237, 379
Csp6I	GTAC	2 cut(s)	213, 455
CviQI	GTAC	2 cut(s)	213, 455
DdeI	CTNAG	5 cut(s)	24, 98, 287, 416, 495
DrdI	GACNNNNNNGTC	1 cut(s)	130
DriI	GACNNNNNGTC	1 cut(s)	247
DseDI	GACNNNNNNGTC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	341
Eam1105I	GACNNNNNGTC	1 cut(s)	247
EciI	GGCGGA	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	316
Eco147I	AGGCCT	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	104
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	4 cut(s)	45, 393, 519, 615
Eco53kI	GAGCTC	1 cut(s)	102
Eco72I	CACGTG	1 cut(s)	277
EcoICRI	GAGCTC	1 cut(s)	102
EcoRII	CCWGG	2 cut(s)	306, 338
EcoT14I	CCWWGG	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	316
FaiI	YATR	2 cut(s)	672, 692
FaqI	GGGAC	2 cut(s)	406, 461
FauI	CCCGC	5 cut(s)	304, 383, 483, 551, 579
Fnu4HI	GCNGC	5 cut(s)	108, 173, 182, 272, 421
FokI	GGATG	3 cut(s)	80, 130, 689
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	5 cut(s)	108, 173, 182, 272, 421
FspBI	CTAG	1 cut(s)	627
GlaI	GCGC	2 cut(s)	85, 176
GluI	GCNGC	5 cut(s)	108, 173, 182, 272, 421
GsaI	CCCAGC	1 cut(s)	635
HaeIII	GGCC	5 cut(s)	315, 321, 326, 338, 343
HapII	CCGG	8 cut(s)	235, 322, 327, 350, 434, 445, 621, 658
HgaI	GACGC	2 cut(s)	237, 379
HhaI	GCGC	2 cut(s)	86, 177
Hin1I	GRCGYC	1 cut(s)	248
Hin6I	GCGC	2 cut(s)	84, 175
HinP1I	GCGC	2 cut(s)	84, 175
HinfI	GANTC	4 cut(s)	26, 89, 356, 610
HpaII	CCGG	8 cut(s)	235, 322, 327, 350, 434, 445, 621, 658
HphI	GGTGA	2 cut(s)	379, 547
Hpy188I	TCNGA	6 cut(s)	25, 31, 334, 361, 519, 615
Hpy188III	TCNNGA	2 cut(s)	13, 97
Hpy99I	CGWCG	2 cut(s)	121, 253
HpyAV	CCTTC	2 cut(s)	400, 589
HpyCH4III	ACNGT	1 cut(s)	508
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	3 cut(s)	271, 384, 541
HpyF10VI	GCNNNNNNNGC	7 cut(s)	113, 134, 178, 181, 292, 491, 596
HpyF3I	CTNAG	5 cut(s)	24, 98, 287, 416, 495
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	248
HspAI	GCGC	2 cut(s)	84, 175
LmnI	GCTCC	2 cut(s)	31, 283
Lsp1109I	GCAGC	3 cut(s)	193, 283, 407
LweI	GCATC	4 cut(s)	119, 152, 528, 667
MaeI	CTAG	1 cut(s)	627
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	367
MboII	GAAGA	1 cut(s)	437
MhlI	GDGCHC	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	35
MmeI	TCCRAC	3 cut(s)	9, 312, 497
MspI	CCGG	8 cut(s)	235, 322, 327, 350, 434, 445, 621, 658
MspR9I	CCNGG	9 cut(s)	235, 308, 323, 328, 340, 351, 435, 446, 659
MvaI	CCWGG	2 cut(s)	308, 340
MwoI	GCNNNNNNNGC	7 cut(s)	113, 134, 178, 181, 292, 491, 596
NciI	CCSGG	7 cut(s)	235, 323, 328, 351, 435, 446, 659
NlaIV	GGNNCC	1 cut(s)	394
NmeAIII	GCCGAG	2 cut(s)	83, 190
NmuCI	GTSAC	1 cut(s)	367
PceI	AGGCCT	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	245
PfeI	GAWTC	3 cut(s)	89, 356, 610
PflFI	GACNNNGTC	1 cut(s)	435
PkrI	GCNGC	5 cut(s)	109, 174, 183, 273, 422
PleI	GAGTC	1 cut(s)	34
PmaCI	CACGTG	1 cut(s)	277
PmlI	CACGTG	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	34
Ppu21I	YACGTR	1 cut(s)	277
Psp124BI	GAGCTC	1 cut(s)	104
Psp6I	CCWGG	2 cut(s)	306, 338
PspCI	CACGTG	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	631
PspGI	CCWGG	2 cut(s)	306, 338
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	6 cut(s)	45, 313, 324, 393, 519, 615
PsyI	GACNNNGTC	1 cut(s)	435
RsaI	GTAC	2 cut(s)	214, 456
RsaNI	GTAC	2 cut(s)	213, 455
SacI	GAGCTC	1 cut(s)	104
SatI	GCNGC	5 cut(s)	108, 173, 182, 272, 421
Sau96I	GGNCC	6 cut(s)	45, 313, 324, 393, 519, 615
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	9 cut(s)	235, 308, 323, 328, 340, 351, 435, 446, 659
SduI	GDGCHC	1 cut(s)	104
SfaNI	GCATC	4 cut(s)	119, 152, 528, 667
SinI	GGWCC	4 cut(s)	45, 393, 519, 615
SseBI	AGGCCT	1 cut(s)	338
SspMI	CTAG	1 cut(s)	627
SstI	GAGCTC	1 cut(s)	104
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	9 cut(s)	233, 306, 321, 326, 338, 349, 433, 444, 657
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	1 cut(s)	508
TaiI	ACGT	1 cut(s)	279
TauI	GCSGC	2 cut(s)	110, 175
TfiI	GAWTC	3 cut(s)	89, 356, 610
TscAI	CASTG	2 cut(s)	420, 548
TseFI	GTSAC	1 cut(s)	367
TseI	GCWGC	3 cut(s)	181, 271, 420
Tsp45I	GTSAC	1 cut(s)	367
TspGWI	ACGGA	3 cut(s)	134, 200, 254
TspRI	CASTG	2 cut(s)	420, 548
Tth111I	GACNNNGTC	1 cut(s)	435
VpaK11BI	GGWCC	4 cut(s)	45, 393, 519, 615
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XspI	CTAG	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.