Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005834

Physical Location & Seq

Genomic Coordinates Forward (+)

15723976 .. 15725329

Gene Structure 1354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0172900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTGTAGGTGTGTCAATTGGGTGGATAGTGTGTTGAAACAGCATAGAGCCTTAAACCTTGAGCGATTCAGGGTTTCTTTTAAACTTGATCCTAGAAGTTGTATTGATGAATGGATTCAATTTGCAATGAGGAAAGGAGTTCAAATGCTTGAGTTGGACTTCTCTGCATATACAGGTCTATTTGATGAAAAATACATATTTAGTAACAAACTGTTAGGTATCAGCGTAACCTCTGCTTTGAAGTCCTTGTGTTCTGAATACATCGATTTTAAGTGCCTTGAAGTTCTTGATTTGAAAACAGTTAATGTAGACCAAGAAGTTCTTGAGTACTTCTTGTCTAACTGTTCACTTCTTGAACGACTGATCGTGTATGCTTCCTCATCATTTGTTAATCTGAGAGTTGTTGGTCAATCGATTGCATTGAAGTACTTAGGCATTGAGATATGTGATGCAAACCTAGTCTCATTTATTTATGAAGGAGATCTGCGAAACTTGCTTTTTAGAAATCTACGACTTCTTGTTGAGGTTTACTTTTTGGAAAGGTTGCGACATGATGTATTAGAGATTGCCTTCCGGTCCTTTTCCTTCTGTCTTTCTCAACTGGAGATCATTCTCAAACTCAATTGTACGATTGTTTGGCTCGAAAGGGATTTTGTAATTCCTTTGTTACCTAATCTCAAGCGTTTGGAATTAGCATTTGATGAAGATGAAGACTGTGCTCTTCTCCATCTCATATCTTTTATTAAGGAATCTCCTTGCTTGCATACACTAGTGTTGCTGTTAGGGGGAAATTTTGATAGAAATAGTCTAGTCTTCAAGAAGAGAGCAGCAAAATACTCCCATGTTTGTCTAAAGGTGGTGGAAATAGTGGGATACTGTGGCTACAACTGTCAAATTGAACTTGTGAAGTACTTAACAAAAACTGCTAGTAATCTGGAGAAAATTATTTTTGATCCTGTTTTTTGGTGGTATAGACGACCCAACAGACGAAGAGAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

333

Amino Acids

38.97

Weight (kDa)

7.44

Isoelectric Point (pI)

33.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	11 - 323	5.3e-23	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	35 - 142	9.1e-09	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38070
fragaria_vesca	FvH4_1g19780 FvH4_5g35460
malus_domestica	MD15G1314000.v1.1 MD15G1384300.v1.1
prunus_persica	Prupe.1G530800_v2.0.a1 Prupe.6G198500_v2.0.a1
pyrus_communis	pycom15g34430
rosa_chinensis	RchiOBHm_Chr2g0111351 RchiOBHm_Chr7g0236841
rosa_laevigata	RLG00000001057 RLG00000017888
rosa_multiflora	Rmu_sc0002867.1_g000019 Rmu_ssc0000075.1_g000002
rosa_roxburghii	Rroxscaffold_2G00132470 Rroxscaffold_3G00224780
rosa_rugosa	Rorug02G0172900 Rorug07G0299800
rosa_samantha	Rh2AG226100 Rh2BG237900 Rh2CG229100 Rh2DG233600 Rh7AG455000 Rh7BG426200 Rh7CG473700 Rh7DG443000
rosa_wichuraiana	Rw2G017460 Rw7G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	309
AclWI	GGATC	2 cut(s)	83, 947
AcsI	RAATTY	1 cut(s)	790
AfaI	GTAC	4 cut(s)	329, 428, 628, 911
AhlI	ACTAGT	1 cut(s)	769
Alw21I	GWGCWC	1 cut(s)	721
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	2 cut(s)	83, 947
ApeKI	GCWGC	1 cut(s)	827
ApoI	RAATTY	1 cut(s)	790
Asp700I	GAANNNNTTC	1 cut(s)	114
AspS9I	GGNCC	1 cut(s)	576
AvaII	GGWCC	1 cut(s)	576
BbsI	GAAGAC	2 cut(s)	717, 805
Bbv12I	GWGCWC	1 cut(s)	721
BbvI	GCAGC	1 cut(s)	839
BccI	CCATC	1 cut(s)	735
BciVI	GTATCC	1 cut(s)	866
BcoDI	GTCTC	1 cut(s)	466
BcuI	ACTAGT	1 cut(s)	769
BfaI	CTAG	5 cut(s)	93, 458, 770, 809, 927
BfuI	GTATCC	1 cut(s)	866
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	1 cut(s)	828
BlsI	GCNGC	1 cut(s)	829
BmcAI	AGTACT	3 cut(s)	329, 428, 911
Bme18I	GGWCC	1 cut(s)	576
BmgT120I	GGNCC	1 cut(s)	576
BmsI	GCATC	1 cut(s)	439
BpiI	GAAGAC	2 cut(s)	717, 805
BpmI	CTGGAG	2 cut(s)	623, 956
BpuEI	CTTGAG	4 cut(s)	80, 170, 344, 662
Bsa29I	ATCGAT	2 cut(s)	264, 413
BsaWI	WCCGGW	1 cut(s)	573
Bse1I	ACTGG	1 cut(s)	606
Bse3DI	GCAATG	1 cut(s)	132
BseCI	ATCGAT	2 cut(s)	264, 413
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	1 cut(s)	606
BseXI	GCAGC	1 cut(s)	839
BshVI	ATCGAT	2 cut(s)	264, 413
BsiHKAI	GWGCWC	1 cut(s)	721
BsiSI	CCGG	1 cut(s)	574
BsmAI	GTCTC	1 cut(s)	466
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp143I	GATC	5 cut(s)	88, 363, 481, 606, 952
BspCNI	CTCAG	1 cut(s)	387
BspDI	ATCGAT	2 cut(s)	264, 413
BspHI	TCATGA	1 cut(s)	998
BspPI	GGATC	2 cut(s)	83, 947
BspQI	GCTCTTC	1 cut(s)	726
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	606
BssMI	GATC	5 cut(s)	88, 363, 481, 606, 952
Bst4CI	ACNGT	6 cut(s)	213, 301, 344, 716, 878, 890
Bst6I	CTCTTC	3 cut(s)	726, 815, 985
BstC8I	GCNNGC	1 cut(s)	761
BstDEI	CTNAG	2 cut(s)	395, 430
BstKTI	GATC	5 cut(s)	91, 366, 484, 609, 955
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	5 cut(s)	88, 363, 481, 606, 952
BstMWI	GCNNNNNNNGC	1 cut(s)	493
BstV1I	GCAGC	1 cut(s)	839
BstV2I	GAAGAC	2 cut(s)	717, 805
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
Bsu15I	ATCGAT	2 cut(s)	264, 413
BsuI	GTATCC	1 cut(s)	866
BsuTUI	ATCGAT	2 cut(s)	264, 413
Cac8I	GCNNGC	1 cut(s)	761
CciI	TCATGA	1 cut(s)	998
Cfr13I	GGNCC	1 cut(s)	576
ClaI	ATCGAT	2 cut(s)	264, 413
Csp6I	GTAC	4 cut(s)	328, 427, 627, 910
CviAII	CATG	3 cut(s)	551, 842, 999
CviJI	RGCY	3 cut(s)	50, 640, 882
CviKI_1	RGCY	3 cut(s)	50, 640, 882
CviQI	GTAC	4 cut(s)	328, 427, 627, 910
DdeI	CTNAG	2 cut(s)	395, 430
DpnI	GATC	5 cut(s)	90, 365, 483, 608, 954
DpnII	GATC	5 cut(s)	88, 363, 481, 606, 952
DraI	TTTAAA	1 cut(s)	82
Eam1104I	CTCTTC	3 cut(s)	726, 815, 985
EarI	CTCTTC	3 cut(s)	726, 815, 985
Eco47I	GGWCC	1 cut(s)	576
FaeI	CATG	3 cut(s)	554, 845, 1002
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FatI	CATG	3 cut(s)	550, 841, 998
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	1 cut(s)	828
Fsp4HI	GCNGC	1 cut(s)	828
FspBI	CTAG	5 cut(s)	93, 458, 770, 809, 927
GluI	GCNGC	1 cut(s)	828
GsuI	CTGGAG	2 cut(s)	623, 956
HapII	CCGG	1 cut(s)	574
Hin1II	CATG	3 cut(s)	554, 845, 1002
HinfI	GANTC	4 cut(s)	66, 115, 749, 995
HpaII	CCGG	1 cut(s)	574
Hpy166II	GTNNAC	3 cut(s)	310, 347, 529
Hpy188I	TCNGA	2 cut(s)	256, 396
Hpy188III	TCNNGA	6 cut(s)	287, 323, 353, 817, 935, 999
Hpy8I	GTNNAC	3 cut(s)	310, 347, 529
HpyAV	CCTTC	3 cut(s)	470, 580, 595
HpyCH4III	ACNGT	6 cut(s)	213, 301, 344, 716, 878, 890
HpyCH4V	TGCA	5 cut(s)	125, 167, 419, 452, 763
HpyF10VI	GCNNNNNNNGC	1 cut(s)	493
HpyF3I	CTNAG	2 cut(s)	395, 430
Hsp92II	CATG	3 cut(s)	554, 845, 1002
Kzo9I	GATC	5 cut(s)	88, 363, 481, 606, 952
LguI	GCTCTTC	1 cut(s)	726
LpnPI	CCDG	6 cut(s)	55, 159, 587, 587, 920, 969
Lsp1109I	GCAGC	1 cut(s)	839
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	5 cut(s)	93, 458, 770, 809, 927
MaeIII	GTNAC	3 cut(s)	203, 226, 666
MalI	GATC	5 cut(s)	90, 365, 483, 608, 954
MboI	GATC	5 cut(s)	88, 363, 481, 606, 952
MboII	GAAGA	6 cut(s)	713, 716, 722, 805, 832, 1002
MfeI	CAATTG	2 cut(s)	16, 622
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	721
MluCI	AATT	8 cut(s)	16, 119, 622, 657, 689, 790, 894, 942
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	4 cut(s)	123, 241, 388, 517
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	7 cut(s)	53, 81, 270, 303, 390, 744, 914
MspI	CCGG	1 cut(s)	574
MunI	CAATTG	2 cut(s)	16, 622
MwoI	GCNNNNNNNGC	1 cut(s)	493
NdeII	GATC	5 cut(s)	88, 363, 481, 606, 952
NlaIII	CATG	3 cut(s)	554, 845, 1002
PagI	TCATGA	1 cut(s)	998
PciSI	GCTCTTC	1 cut(s)	726
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	3 cut(s)	66, 115, 749
PkrI	GCNGC	1 cut(s)	829
PspPI	GGNCC	1 cut(s)	576
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	4 cut(s)	329, 428, 628, 911
RsaNI	GTAC	4 cut(s)	328, 427, 627, 910
SapI	GCTCTTC	1 cut(s)	726
SaqAI	TTAA	7 cut(s)	53, 81, 270, 303, 390, 744, 914
SatI	GCNGC	1 cut(s)	828
Sau3AI	GATC	5 cut(s)	88, 363, 481, 606, 952
Sau96I	GGNCC	1 cut(s)	576
ScaI	AGTACT	3 cut(s)	329, 428, 911
SduI	GDGCHC	1 cut(s)	721
SfaNI	GCATC	1 cut(s)	439
SinI	GGWCC	1 cut(s)	576
SmlI	CTYRAG	4 cut(s)	59, 149, 323, 677
SmoI	CTYRAG	4 cut(s)	59, 149, 323, 677
SpeI	ACTAGT	1 cut(s)	769
Sse9I	AATT	8 cut(s)	16, 119, 622, 657, 689, 790, 894, 942
SspMI	CTAG	5 cut(s)	93, 458, 770, 809, 927
TaaI	ACNGT	6 cut(s)	213, 301, 344, 716, 878, 890
TaqI	TCGA	3 cut(s)	264, 413, 642
TasI	AATT	8 cut(s)	16, 119, 622, 657, 689, 790, 894, 942
TatI	WGTACW	3 cut(s)	327, 426, 909
TfiI	GAWTC	3 cut(s)	66, 115, 749
Tru1I	TTAA	7 cut(s)	53, 81, 270, 303, 390, 744, 914
Tru9I	TTAA	7 cut(s)	53, 81, 270, 303, 390, 744, 914
TseI	GCWGC	1 cut(s)	827
TspDTI	ATGAA	5 cut(s)	123, 201, 489, 717, 723
VpaK11BI	GGWCC	1 cut(s)	576
XapI	RAATTY	1 cut(s)	790
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	114
XspI	CTAG	5 cut(s)	93, 458, 770, 809, 927
ZrmI	AGTACT	3 cut(s)	329, 428, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.