Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005834

Physical Location & Seq

Genomic Coordinates Forward (+)

23227671 .. 23228339

Gene Structure 669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG233600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCGAATCAATAGTCAATATGCAGCTCTTCGTAAAATCCTCCCAAACTTGATCAAAATGGACAAGGCTTCTGTGCTCGCAGAGACCGTCCGACAAGTAAGGGAGCTTAAGAAGGTGGTAGCAGATACTGAAGCAGCATGTCGTGGCAGTGGCAGTGAGTGTGTTATTCCCAGCGGCGTTAACAAGTTGAGTTTGGAGAAGTGTGAAGGCAAGCAAGAAGGGCTTGTGAAAGCAACATTTAGCTGCGAGGATAGGCCAGGGCTAATATTGGACATGATTAGGGAGCTGAGGTCAGGGAAAGGGAGGGTGGTGAGGGCGGAGATGGTGACAGTAGGTGGAAGGACTAAGAGTGTGTTGTGGGTGAAAGGGTTGGGTGCTGGAAGTGAAGGGATAGTGTGCCTTAAGAAGGCATTAAATAAGGTGATTGTTGACAGGCCAAGCATTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

149

Amino Acids

16.13

Weight (kDa)

9.74

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38070
fragaria_vesca	FvH4_1g19780 FvH4_5g35460
malus_domestica	MD15G1314000.v1.1 MD15G1384300.v1.1
prunus_persica	Prupe.1G530800_v2.0.a1 Prupe.6G198500_v2.0.a1
pyrus_communis	pycom15g34430
rosa_chinensis	RchiOBHm_Chr2g0111351 RchiOBHm_Chr7g0236841
rosa_laevigata	RLG00000001057 RLG00000017888
rosa_multiflora	Rmu_sc0002867.1_g000019 Rmu_ssc0000075.1_g000002
rosa_roxburghii	Rroxscaffold_2G00132470 Rroxscaffold_3G00224780
rosa_rugosa	Rorug02G0172900 Rorug07G0299800
rosa_samantha	Rh2AG226100 Rh2BG237900 Rh2CG229100 Rh2DG233600 Rh7AG455000 Rh7BG426200 Rh7CG473700 Rh7DG443000
rosa_wichuraiana	Rw2G017460 Rw7G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	174, 317
AcuI	CTGAAG	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	406
AflII	CTTAAG	2 cut(s)	107, 401
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	4 cut(s)	26, 106, 243, 286
AluI	AGCT	4 cut(s)	26, 106, 243, 286
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	2 cut(s)	254, 434
ApeKI	GCWGC	3 cut(s)	23, 134, 243
ArsI	GACNNNNNNTTYG	1 cut(s)	30
AsuHPI	GGTGA	4 cut(s)	322, 337, 373, 433
Bbv12I	GWGCWC	1 cut(s)	78
BbvCI	CCTCAGC	1 cut(s)	287
BbvI	GCAGC	3 cut(s)	35, 146, 230
BccI	CCATC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	258
BclI	TGATCA	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	77
BfrI	CTTAAG	2 cut(s)	107, 401
BisI	GCNGC	4 cut(s)	24, 135, 175, 244
BlsI	GCNGC	4 cut(s)	25, 136, 176, 245
Bme1390I	CCNGG	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	257
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	257
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseMII	CTCAG	1 cut(s)	278
BseXI	GCAGC	3 cut(s)	35, 146, 230
BseYI	CCCAGC	1 cut(s)	170
BshFI	GGCC	2 cut(s)	256, 436
BsiHKAI	GWGCWC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmAI	GTCTC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	256, 436
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	2 cut(s)	174, 317
BspANI	GGCC	2 cut(s)	256, 436
BspCNI	CTCAG	1 cut(s)	279
BspQI	GCTCTTC	1 cut(s)	33
BspTI	CTTAAG	2 cut(s)	107, 401
BspTNI	GGTCTC	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	88, 331
Bst6I	CTCTTC	1 cut(s)	33
BstAFI	CTTAAG	2 cut(s)	107, 401
BstC8I	GCNNGC	2 cut(s)	78, 212
BstDEI	CTNAG	2 cut(s)	287, 345
BstENI	CCTNNNNNAGG	1 cut(s)	404
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	1 cut(s)	220
BstNI	CCWGG	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	256
BstV1I	GCAGC	3 cut(s)	35, 146, 230
BsuRI	GGCC	2 cut(s)	256, 436
BtsI	GCAGTG	2 cut(s)	154, 160
BtsIMutI	CAGTG	2 cut(s)	154, 160
Cac8I	GCNNGC	2 cut(s)	78, 212
CaiI	CAGNNNCTG	1 cut(s)	128
CviAII	CATG	2 cut(s)	138, 274
CviJI	RGCY	9 cut(s)	26, 68, 106, 223, 243, 256, 262, 286, 436
CviKI_1	RGCY	9 cut(s)	26, 68, 106, 223, 243, 256, 262, 286, 436
DdeI	CTNAG	2 cut(s)	287, 345
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
EciI	GGCGGA	1 cut(s)	332
Eco31I	GGTCTC	1 cut(s)	77
Eco57I	CTGAAG	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	256
FaeI	CATG	2 cut(s)	141, 277
FaiI	YATR	3 cut(s)	21, 139, 275
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FatI	CATG	2 cut(s)	137, 273
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	4 cut(s)	24, 135, 175, 244
Fsp4HI	GCNGC	4 cut(s)	24, 135, 175, 244
GluI	GCNGC	4 cut(s)	24, 135, 175, 244
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	256, 436
Hin1II	CATG	2 cut(s)	141, 277
HincII	GTYRAC	2 cut(s)	181, 430
HindII	GTYRAC	2 cut(s)	181, 430
HinfI	GANTC	1 cut(s)	6
HpaI	GTTAAC	1 cut(s)	181
HphI	GGTGA	4 cut(s)	322, 337, 373, 433
Hpy166II	GTNNAC	2 cut(s)	181, 430
Hpy188I	TCNGA	1 cut(s)	92
Hpy8I	GTNNAC	2 cut(s)	181, 430
HpyAV	CCTTC	6 cut(s)	106, 200, 212, 333, 380, 400
HpyCH4III	ACNGT	2 cut(s)	88, 331
HpyCH4V	TGCA	1 cut(s)	23
HpyF10VI	GCNNNNNNNGC	1 cut(s)	220
HpyF3I	CTNAG	2 cut(s)	287, 345
Hsp92II	CATG	2 cut(s)	141, 277
Ksp22I	TGATCA	1 cut(s)	51
KspAI	GTTAAC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	51
LguI	GCTCTTC	1 cut(s)	33
LmnI	GCTCC	2 cut(s)	103, 283
LpnPI	CCDG	6 cut(s)	184, 243, 270, 279, 363, 418
Lsp1109I	GCAGC	3 cut(s)	35, 146, 230
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	78
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	5 cut(s)	50, 241, 282, 297, 306
MseI	TTAA	4 cut(s)	108, 180, 402, 413
MspA1I	CMGCKG	1 cut(s)	174
MspCI	CTTAAG	2 cut(s)	107, 401
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	220
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	2 cut(s)	141, 277
NmuCI	GTSAC	1 cut(s)	325
NspI	RCATGY	1 cut(s)	141
PciSI	GCTCTTC	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	4 cut(s)	25, 136, 176, 245
Psp6I	CCWGG	1 cut(s)	256
PspFI	CCCAGC	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	256
PstNI	CAGNNNCTG	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	4 cut(s)	108, 180, 402, 413
SatI	GCNGC	4 cut(s)	24, 135, 175, 244
Sau3AI	GATC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	8 cut(s)	28, 108, 117, 245, 288, 293, 337, 423
SmlI	CTYRAG	2 cut(s)	107, 401
SmoI	CTYRAG	2 cut(s)	107, 401
SsiI	CCGC	2 cut(s)	174, 317
SspI	AATATT	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	256
TaaI	ACNGT	2 cut(s)	88, 331
TauI	GCSGC	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	6
Tru1I	TTAA	4 cut(s)	108, 180, 402, 413
Tru9I	TTAA	4 cut(s)	108, 180, 402, 413
TscAI	CASTG	2 cut(s)	154, 160
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	3 cut(s)	23, 134, 243
Tsp45I	GTSAC	1 cut(s)	325
TspRI	CASTG	2 cut(s)	154, 160
Vha464I	CTTAAG	2 cut(s)	107, 401
XagI	CCTNNNNNAGG	1 cut(s)	404
XceI	RCATGY	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.