FvH4_5g35460

protein dimerization activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0005834
Physical Location & Seq
Forward (+)
25967135 .. 25967964
830 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g35460.t1

Sequence Viewer

Length: 672 bp
ATGCTTTCTTTCAACGAGGTGTTGGAGACAAAAAATCAAAAGGGTTACAACAATTTCTCCTCATGGTCGCCGTCGGTGGTGAACATGACGGTCGACGCTGCAGATTCCGTCACGAGCTCAGCTGCGTCGCTGAGCCACAAGGAAGCTGAGAGGAGGCGCCGCCAGCGTATCAACACCCACCTCTCCACCCTCCGTACTCTCCTCCCGAGCACCACCAGAACGGACAAGGCGTCGCTGCTGGCGGAGGTGGTGCAACACGTGAAGGACCTGAAGCGGCGGGTTGATGAGCTGGCGCGGCAGGAGGGAGACACGTCGCTTTTTCCGGGAGAGGTGGACGAGGTGAGAGTGAGTTGCGACGGTGAAGGTTTTATGAAGGCGACGCTTTGCTGCGAGGACAGGCCGGGTCTGAACCGGGACTTGGTGAAGGCCATGCGGTCGGTTCGGGTCAGGGCGGTGAAAGTGGAGACGGTGACGGTGGGAGGGAGGACCAAGAGTGTGGTGGTGATGAAGTGGACTGGTGGTGGAGGTGGAGAGGAGGAGGTGAAGGATTTGAAGGTGGCTTTGAAGGCGGTGGTGGAAAATCGGGCGTCGGGTCGGGTCAGTTTGTTGGGAAAGCGGGCTCGGTTTTACGGGTCTGTTTATAAGGATGATGATTCATGCTTGAAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GATA PAS_3 PWWP

Protein Analysis

224

Amino Acids

24.61

Weight (kDa)

9.41

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 45 - 91 8.6e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 642
AccB1I GGYRCC 1 cut(s) 156
AccI GTMKAC 1 cut(s) 93
AccII CGCG 1 cut(s) 295
AciI CCGC 9 cut(s) 160, 242, 274, 277, 295, 433, 452, 569, 616
AcuI CTGAAG 1 cut(s) 290
AcvI CACGTG 1 cut(s) 259
AcyI GRCGYC 3 cut(s) 157, 230, 587
AfaI GTAC 1 cut(s) 196
AfiI CCNNNNNNNGG 1 cut(s) 418
AflIII ACRYGT 2 cut(s) 256, 309
AgsI TTSAA 4 cut(s) 13, 553, 565, 664
AhdI GACNNNNNGTC 1 cut(s) 229
AjiI CACGTC 1 cut(s) 312
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AluBI AGCT 4 cut(s) 117, 122, 146, 289
AluI AGCT 4 cut(s) 117, 122, 146, 289
Alw21I GWGCWC 2 cut(s) 119, 212
Alw26I GTCTC 3 cut(s) 20, 300, 458
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 2 cut(s) 398, 426
ApeKI GCWGC 4 cut(s) 98, 122, 235, 387
AspLEI GCGC 2 cut(s) 159, 295
AspS9I GGNCC 2 cut(s) 265, 486
AsuC2I CCSGG 3 cut(s) 324, 402, 413
AsuHPI GGTGA 8 cut(s) 91, 352, 371, 433, 466, 481, 514, 553
AvaI CYCGRG 1 cut(s) 205
AvaII GGWCC 2 cut(s) 265, 486
BanI GGYRCC 1 cut(s) 156
BanII GRGCYC 2 cut(s) 119, 622
BauI CACGAG 1 cut(s) 112
BbrPI CACGTG 1 cut(s) 259
Bbv12I GWGCWC 2 cut(s) 119, 212
BbvI GCAGC 4 cut(s) 85, 109, 222, 374
BceAI ACGGC 1 cut(s) 55
BcnI CCSGG 3 cut(s) 324, 402, 413
BcoDI GTCTC 3 cut(s) 20, 300, 458
BfmI CTRYAG 1 cut(s) 99
BfoI RGCGCY 1 cut(s) 160
BisI GCNGC 7 cut(s) 99, 123, 160, 236, 275, 296, 388
BlpI GCTNAGC 2 cut(s) 118, 131
BlsI GCNGC 7 cut(s) 100, 124, 161, 237, 276, 297, 389
Bme1390I CCNGG 3 cut(s) 324, 402, 413
Bme18I GGWCC 2 cut(s) 265, 486
BmeRI GACNNNNNGTC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 205
BmgBI CACGTC 1 cut(s) 312
BmgT120I GGNCC 2 cut(s) 265, 486
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 3 cut(s) 324, 402, 413
Bpu1102I GCTNAGC 2 cut(s) 118, 131
BpuMI CCSGG 3 cut(s) 324, 402, 413
BsaAI YACGTR 1 cut(s) 259
BsaHI GRCGYC 3 cut(s) 157, 230, 587
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bsc4I CCNNNNNNNGG 1 cut(s) 418
Bse1I ACTGG 1 cut(s) 520
BseGI GGATG 1 cut(s) 652
BseLI CCNNNNNNNGG 1 cut(s) 418
BseMII CTCAG 3 cut(s) 122, 132, 138
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 5 cut(s) 49, 166, 191, 548, 551
BseXI GCAGC 4 cut(s) 85, 109, 222, 374
Bsh1236I CGCG 1 cut(s) 295
Bsh1285I CGRYCG 2 cut(s) 93, 437
BshFI GGCC 2 cut(s) 400, 428
BshNI GGYRCC 1 cut(s) 156
BsiEI CGRYCG 2 cut(s) 93, 437
BsiHKAI GWGCWC 2 cut(s) 119, 212
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 3 cut(s) 323, 401, 412
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 1 cut(s) 418
BsmAI GTCTC 3 cut(s) 20, 300, 458
BsmBI CGTCTC 1 cut(s) 458
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 2 cut(s) 400, 428
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 3 cut(s) 119, 212, 622
Bsp1720I GCTNAGC 2 cut(s) 118, 131
BspACI CCGC 9 cut(s) 160, 242, 274, 277, 295, 433, 452, 569, 616
BspANI GGCC 2 cut(s) 400, 428
BspCNI CTCAG 3 cut(s) 123, 131, 139
BspFNI CGCG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 158
BspMAI CTGCAG 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 520
BssNI GRCGYC 3 cut(s) 157, 230, 587
BssSI CACGAG 1 cut(s) 112
Bst2BI CACGAG 1 cut(s) 112
Bst4CI ACNGT 4 cut(s) 91, 359, 469, 475
BstACI GRCGYC 3 cut(s) 157, 230, 587
BstBAI YACGTR 1 cut(s) 259
BstC8I GCNNGC 4 cut(s) 164, 240, 291, 618
BstDEI CTNAG 3 cut(s) 118, 131, 147
BstF5I GGATG 1 cut(s) 652
BstFNI CGCG 1 cut(s) 295
BstH2I RGCGCY 1 cut(s) 160
BstHHI GCGC 2 cut(s) 159, 295
BstMAI GTCTC 3 cut(s) 20, 300, 458
BstMCI CGRYCG 2 cut(s) 93, 437
BstMWI GCNNNNNNNGC 3 cut(s) 163, 295, 566
BstSCI CCNGG 3 cut(s) 322, 400, 411
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 4 cut(s) 85, 109, 222, 374
BstXI CCANNNNNNTGG 1 cut(s) 496
BsuRI GGCC 2 cut(s) 400, 428
BtrI CACGTC 1 cut(s) 312
BtsCI GGATG 1 cut(s) 652
Cac8I GCNNGC 4 cut(s) 164, 240, 291, 618
CfoI GCGC 2 cut(s) 159, 295
Cfr13I GGNCC 2 cut(s) 265, 486
CseI GACGC 5 cut(s) 104, 114, 219, 388, 576
Csp6I GTAC 1 cut(s) 195
CviAII CATG 4 cut(s) 63, 85, 430, 657
CviJI RGCY 9 cut(s) 117, 122, 135, 146, 289, 400, 428, 560, 620
CviKI_1 RGCY 9 cut(s) 117, 122, 135, 146, 289, 400, 428, 560, 620
CviQI GTAC 1 cut(s) 195
DdeI CTNAG 3 cut(s) 118, 131, 147
DinI GGCGCC 1 cut(s) 158
DriI GACNNNNNGTC 1 cut(s) 229
Eam1105I GACNNNNNGTC 1 cut(s) 229
EciI GGCGGA 1 cut(s) 257
Ecl136II GAGCTC 1 cut(s) 117
Eco24I GRGCYC 2 cut(s) 119, 622
Eco47I GGWCC 2 cut(s) 265, 486
Eco53kI GAGCTC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 290
Eco72I CACGTG 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 117
EcoO109I RGGNCCY 1 cut(s) 265
EcoT38I GRGCYC 2 cut(s) 119, 622
EgeI GGCGCC 1 cut(s) 158
EheI GGCGCC 1 cut(s) 158
Esp3I CGTCTC 1 cut(s) 458
FaeI CATG 4 cut(s) 66, 88, 433, 660
FaiI YATR 6 cut(s) 64, 86, 371, 431, 642, 658
FaqI GGGAC 1 cut(s) 428
FatI CATG 4 cut(s) 62, 84, 429, 656
FauI CCCGC 2 cut(s) 270, 609
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 7 cut(s) 99, 123, 160, 236, 275, 296, 388
FokI GGATG 1 cut(s) 659
FriOI GRGCYC 2 cut(s) 119, 622
Fsp4HI GCNGC 7 cut(s) 99, 123, 160, 236, 275, 296, 388
GlaI GCGC 2 cut(s) 158, 294
GluI GCNGC 7 cut(s) 99, 123, 160, 236, 275, 296, 388
HaeII RGCGCY 1 cut(s) 160
HaeIII GGCC 2 cut(s) 400, 428
HapII CCGG 3 cut(s) 323, 401, 412
HgaI GACGC 5 cut(s) 104, 114, 219, 388, 576
HhaI GCGC 2 cut(s) 159, 295
Hin1I GRCGYC 3 cut(s) 157, 230, 587
Hin1II CATG 4 cut(s) 66, 88, 433, 660
Hin6I GCGC 2 cut(s) 157, 293
HinP1I GCGC 2 cut(s) 157, 293
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 2 cut(s) 104, 653
HpaII CCGG 3 cut(s) 323, 401, 412
HphI GGTGA 8 cut(s) 91, 352, 371, 433, 466, 481, 514, 553
Hpy166II GTNNAC 4 cut(s) 82, 94, 334, 513
Hpy188I TCNGA 1 cut(s) 408
Hpy188III TCNNGA 2 cut(s) 112, 205
Hpy8I GTNNAC 4 cut(s) 82, 94, 334, 513
Hpy99I CGWCG 8 cut(s) 76, 98, 130, 235, 316, 359, 382, 592
HpyAV CCTTC 7 cut(s) 256, 356, 367, 418, 538, 547, 559
HpyCH4III ACNGT 4 cut(s) 91, 359, 469, 475
HpyCH4IV ACGT 2 cut(s) 258, 311
HpyCH4V TGCA 2 cut(s) 101, 253
HpyF10VI GCNNNNNNNGC 3 cut(s) 163, 295, 566
HpyF3I CTNAG 3 cut(s) 118, 131, 147
HpySE526I ACGT 2 cut(s) 258, 311
Hsp92I GRCGYC 3 cut(s) 157, 230, 587
Hsp92II CATG 4 cut(s) 66, 88, 433, 660
HspAI GCGC 2 cut(s) 157, 293
KasI GGCGCC 1 cut(s) 156
Lsp1109I GCAGC 4 cut(s) 85, 109, 222, 374
MaeII ACGT 2 cut(s) 258, 311
MaeIII GTNAC 3 cut(s) 44, 109, 469
MhlI GDGCHC 3 cut(s) 119, 212, 622
MluCI AATT 1 cut(s) 52
Mly113I GGCGCC 1 cut(s) 157
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 3 cut(s) 323, 401, 412
MspR9I CCNGG 3 cut(s) 324, 402, 413
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 3 cut(s) 163, 295, 566
NarI GGCGCC 1 cut(s) 157
NciI CCSGG 3 cut(s) 324, 402, 413
NlaIII CATG 4 cut(s) 66, 88, 433, 660
NlaIV GGNNCC 1 cut(s) 158
NmuCI GTSAC 2 cut(s) 109, 469
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PfeI GAWTC 2 cut(s) 104, 653
PfoI TCCNGGA 1 cut(s) 322
PkrI GCNGC 7 cut(s) 100, 124, 161, 237, 276, 297, 389
PluTI GGCGCC 1 cut(s) 160
PmaCI CACGTG 1 cut(s) 259
PmlI CACGTG 1 cut(s) 259
Ppu21I YACGTR 1 cut(s) 259
PpuMI RGGWCCY 1 cut(s) 265
PsiI TTATAA 1 cut(s) 642
Psp124BI GAGCTC 1 cut(s) 119
Psp5II RGGWCCY 1 cut(s) 265
PspCI CACGTG 1 cut(s) 259
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 2 cut(s) 265, 486
PspPPI RGGWCCY 1 cut(s) 265
PstI CTGCAG 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 1 cut(s) 196
RsaNI GTAC 1 cut(s) 195
SacI GAGCTC 1 cut(s) 119
SalI GTCGAC 1 cut(s) 92
SatI GCNGC 7 cut(s) 99, 123, 160, 236, 275, 296, 388
Sau96I GGNCC 2 cut(s) 265, 486
ScrFI CCNGG 3 cut(s) 324, 402, 413
SduI GDGCHC 3 cut(s) 119, 212, 622
SfcI CTRYAG 1 cut(s) 99
SfoI GGCGCC 1 cut(s) 158
SinI GGWCC 2 cut(s) 265, 486
Sse9I AATT 1 cut(s) 52
SsiI CCGC 9 cut(s) 160, 242, 274, 277, 295, 433, 452, 569, 616
SspDI GGCGCC 1 cut(s) 156
SstI GAGCTC 1 cut(s) 119
StyD4I CCNGG 3 cut(s) 322, 400, 411
TaaI ACNGT 4 cut(s) 91, 359, 469, 475
TaiI ACGT 2 cut(s) 261, 314
TaqI TCGA 1 cut(s) 93
TasI AATT 1 cut(s) 52
TauI GCSGC 3 cut(s) 162, 277, 298
TfiI GAWTC 2 cut(s) 104, 653
TseFI GTSAC 2 cut(s) 109, 469
TseI GCWGC 4 cut(s) 98, 122, 235, 387
Tsp45I GTSAC 2 cut(s) 109, 469
TspDTI ATGAA 3 cut(s) 386, 521, 645
TspGWI ACGGA 3 cut(s) 97, 182, 236
VpaK11BI GGWCC 2 cut(s) 265, 486
XcmI CCANNNNNNNNNTGG 1 cut(s) 496
XmiI GTMKAC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.