Rh2BG237900
BHLH Family

Transcription factor bHLH131-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005834
Physical Location & Seq
Forward (+)
23671097 .. 23672804
1708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG237900.1

Sequence Viewer

Length: 414 bp
ATGGACAAGGCTTCTTTGCTCGCAGAGACCGTCCGACAAGTAAGGGAGCTTAAGAAGGTGGTAGCAGATACTGAAGCAGCATGTCGTGGCAGTGGCAGTGAGTGTGTTATTCCCAGCGGCGTTAACAAGTTGAGTTTGGAGAAGTGTGAAGGCAAGCAAGAAGGGCTTGTGAAAGCAACATTTAGCTGCGAGGATAGGCCAGGGCTAATATTGGACATGATTAGGGAGCTGAGGTCAGGGAAAGGGAGGGTGGTGAGGGCGGAGATGGTGACAGTAGGTGGGAGGACTAAGAGTGTGTTGTGGGTGAAAGGGTTGGGTACTGGAAGTGAAGGGATAGTGTGCCTTAAGAAGGCATTAAATAAGGTGATTGTTGACAGGCCAAGCATTATTCAGAAGCTACATCTCCCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

137

Amino Acids

14.8

Weight (kDa)

9.57

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 117, 260
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 349
AflII CTTAAG 2 cut(s) 50, 344
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 4 cut(s) 49, 186, 229, 397
AluI AGCT 4 cut(s) 49, 186, 229, 397
Alw26I GTCTC 1 cut(s) 20
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 2 cut(s) 197, 377
ApeKI GCWGC 2 cut(s) 77, 186
AsuHPI GGTGA 4 cut(s) 265, 280, 316, 376
BbvCI CCTCAGC 1 cut(s) 230
BbvI GCAGC 2 cut(s) 89, 173
BccI CCATC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 20
BfrI CTTAAG 2 cut(s) 50, 344
BisI GCNGC 3 cut(s) 78, 118, 187
BlsI GCNGC 3 cut(s) 79, 119, 188
Bme1390I CCNGG 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 201
Bpu10I CCTNAGC 1 cut(s) 230
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 200
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 1 cut(s) 349
Bse1I ACTGG 1 cut(s) 325
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 200
BseLI CCNNNNNNNGG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 325
BseXI GCAGC 2 cut(s) 89, 173
BseYI CCCAGC 1 cut(s) 113
BshFI GGCC 2 cut(s) 199, 379
BslI CCNNNNNNNGG 1 cut(s) 349
BsmAI GTCTC 1 cut(s) 20
BsnI GGCC 2 cut(s) 199, 379
Bso31I GGTCTC 1 cut(s) 20
BspACI CCGC 2 cut(s) 117, 260
BspANI GGCC 2 cut(s) 199, 379
BspCNI CTCAG 1 cut(s) 222
BspTI CTTAAG 2 cut(s) 50, 344
BspTNI GGTCTC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 325
BssECI CCNNGG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 201
Bst4CI ACNGT 2 cut(s) 31, 274
BstAFI CTTAAG 2 cut(s) 50, 344
BstC8I GCNNGC 2 cut(s) 21, 155
BstDEI CTNAG 3 cut(s) 230, 288, 408
BstENI CCTNNNNNAGG 1 cut(s) 347
BstMAI GTCTC 1 cut(s) 20
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNI CCWGG 1 cut(s) 201
BstNSI RCATGY 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 199
BstV1I GCAGC 2 cut(s) 89, 173
BsuRI GGCC 2 cut(s) 199, 379
BtsI GCAGTG 2 cut(s) 97, 103
BtsIMutI CAGTG 2 cut(s) 97, 103
Cac8I GCNNGC 2 cut(s) 21, 155
CaiI CAGNNNCTG 1 cut(s) 71
Csp6I GTAC 1 cut(s) 318
CviAII CATG 2 cut(s) 81, 217
CviJI RGCY 9 cut(s) 11, 49, 166, 186, 199, 205, 229, 379, 397
CviKI_1 RGCY 9 cut(s) 11, 49, 166, 186, 199, 205, 229, 379, 397
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 3 cut(s) 230, 288, 408
EciI GGCGGA 1 cut(s) 275
Eco31I GGTCTC 1 cut(s) 20
Eco57I CTGAAG 1 cut(s) 93
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoRII CCWGG 1 cut(s) 199
FaeI CATG 2 cut(s) 84, 220
FaiI YATR 2 cut(s) 82, 218
FalI AAGNNNNNCTT 2 cut(s) 150, 182
FatI CATG 2 cut(s) 80, 216
Fnu4HI GCNGC 3 cut(s) 78, 118, 187
Fsp4HI GCNGC 3 cut(s) 78, 118, 187
GluI GCNGC 3 cut(s) 78, 118, 187
GsaI CCCAGC 1 cut(s) 117
HaeIII GGCC 2 cut(s) 199, 379
Hin1II CATG 2 cut(s) 84, 220
HincII GTYRAC 2 cut(s) 124, 373
HindII GTYRAC 2 cut(s) 124, 373
HpaI GTTAAC 1 cut(s) 124
HphI GGTGA 4 cut(s) 265, 280, 316, 376
Hpy166II GTNNAC 2 cut(s) 124, 373
Hpy188I TCNGA 2 cut(s) 35, 393
Hpy8I GTNNAC 2 cut(s) 124, 373
HpyAV CCTTC 5 cut(s) 49, 143, 155, 323, 343
HpyCH4III ACNGT 2 cut(s) 31, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpyF3I CTNAG 3 cut(s) 230, 288, 408
Hsp92II CATG 2 cut(s) 84, 220
KspAI GTTAAC 1 cut(s) 124
LmnI GCTCC 2 cut(s) 46, 226
LpnPI CCDG 6 cut(s) 127, 186, 213, 222, 306, 361
Lsp1109I GCAGC 2 cut(s) 89, 173
MaeIII GTNAC 1 cut(s) 268
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 5 cut(s) 184, 225, 240, 249, 276
MseI TTAA 4 cut(s) 51, 123, 345, 356
MspA1I CMGCKG 1 cut(s) 117
MspCI CTTAAG 2 cut(s) 50, 344
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 163
NlaIII CATG 2 cut(s) 84, 220
NmuCI GTSAC 1 cut(s) 268
NspI RCATGY 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PkrI GCNGC 3 cut(s) 79, 119, 188
Psp6I CCWGG 1 cut(s) 199
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 199
PstNI CAGNNNCTG 1 cut(s) 71
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SaqAI TTAA 4 cut(s) 51, 123, 345, 356
SatI GCNGC 3 cut(s) 78, 118, 187
ScrFI CCNGG 1 cut(s) 201
SetI ASST 8 cut(s) 51, 60, 188, 231, 236, 280, 366, 399
SmlI CTYRAG 2 cut(s) 50, 344
SmoI CTYRAG 2 cut(s) 50, 344
SsiI CCGC 2 cut(s) 117, 260
SspI AATATT 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 199
TaaI ACNGT 2 cut(s) 31, 274
TauI GCSGC 1 cut(s) 120
Tru1I TTAA 4 cut(s) 51, 123, 345, 356
Tru9I TTAA 4 cut(s) 51, 123, 345, 356
TscAI CASTG 2 cut(s) 97, 103
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 2 cut(s) 77, 186
Tsp45I GTSAC 1 cut(s) 268
TspRI CASTG 2 cut(s) 97, 103
Vha464I CTTAAG 2 cut(s) 50, 344
XagI CCTNNNNNAGG 1 cut(s) 347
XceI RCATGY 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.