Rorug07G0299800

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005834
Physical Location & Seq
Forward (+)
29630571 .. 29633132
2562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0299800.1

Sequence Viewer

Length: 693 bp
ATGCAAAGCTCACTGTCGTTCCTCTCTGTGGCGAAGCCCCTCTCAGTCTCATCTCCGGTTCGCATCAACTGTTCATTGTTCACCGCCCCAAGCACCACCGACCCCAATTCAATGGCAGCTTCCGGTCCCAAGTGGGCCCAGAAGACCATAACTCTGCCTCCCCAGAGAAGAGGCTGCCACCTCATCACCCCTAAGATAATGAAGGAAATCGGGCAGGACTTGTCTGGATTCAACTGCGGACTTGCTCACCTCTTCTTGCAACACACAAGTGCTTCTCTTACTATCAATGAGAACTATGACTCTGATGTTCGTACAGACACAGAGACATTCCTCAATAGGGTAGTTCCTGAGGGGGCATCTGCACCGTGGAGACATACCCTTGAAGGCCCAGATGACATGCCGGCACACATTAAATCATCAATGTTTGGCTGCCAACTCTCGATTCCAATCACAAATGGGAAGCTTAACATGGGAACTTGGCAGCAAGATGTTCTATGGCTGCTCCGCTTATTAAAGTTCTTGAGTGATGGGCTAATTACTAGGGAATATGGTTGTGTGAGCATCGTGACGAACCCGCTGCTCGGAAAGTTGTGGTCACCCTTAATGGAATATGAGATGCTGCAATTTGGAACTCTCATGGTTTCTTTCATCCAGTTTGCCAATGAAGTTGTACCTAAGCATCTACTCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

230

Amino Acids

25.48

Weight (kDa)

6.99

Isoelectric Point (pI)

35.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YjbQ PF01894 62 - 165 3.2e-34 UPF0047 protein YjbQ-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 84, 237, 505, 575
AfaI GTAC 2 cut(s) 313, 672
AfiI CCNNNNNNNGG 3 cut(s) 28, 337, 581
AgsI TTSAA 3 cut(s) 111, 232, 383
AjuI GAANNNNNNNTTGG 2 cut(s) 426, 458
AleI CACNNNNGTG 1 cut(s) 267
AluBI AGCT 3 cut(s) 9, 119, 463
AluI AGCT 3 cut(s) 9, 119, 463
Alw26I GTCTC 3 cut(s) 52, 317, 364
AoxI GGCC 2 cut(s) 135, 385
ApaI GGGCCC 1 cut(s) 139
ApeKI GCWGC 7 cut(s) 116, 174, 429, 481, 499, 577, 619
AspS9I GGNCC 4 cut(s) 125, 135, 136, 386
AsuHPI GGTGA 4 cut(s) 73, 178, 239, 588
AvaII GGWCC 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 149
BbvI GCAGC 7 cut(s) 128, 161, 416, 486, 493, 564, 606
BccI CCATC 1 cut(s) 521
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BcoDI GTCTC 3 cut(s) 52, 317, 364
BfaI CTAG 1 cut(s) 540
BisI GCNGC 7 cut(s) 117, 175, 430, 482, 500, 578, 620
BlsI GCNGC 7 cut(s) 118, 176, 431, 483, 501, 579, 621
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 4 cut(s) 125, 135, 136, 386
BmiI GGNNCC 2 cut(s) 127, 137
BmsI GCATC 5 cut(s) 72, 365, 570, 606, 688
BpiI GAAGAC 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 675
BpuEI CTTGAG 1 cut(s) 541
BsaBI GATNNNNATC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 365
BsaWI WCCGGW 2 cut(s) 55, 122
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 337, 581
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 1 cut(s) 652
Bse21I CCTNAGG 1 cut(s) 348
Bse8I GATNNNNATC 1 cut(s) 446
BseDI CCNNGG 1 cut(s) 365
BseGI GGATG 1 cut(s) 648
BseJI GATNNNNATC 1 cut(s) 446
BseLI CCNNNNNNNGG 3 cut(s) 28, 337, 581
BseMII CTCAG 2 cut(s) 57, 339
BseNI ACTGG 1 cut(s) 652
BseSI GKGCMC 1 cut(s) 139
BseXI GCAGC 7 cut(s) 128, 161, 416, 486, 493, 564, 606
BsgI GTGCAG 1 cut(s) 345
BshFI GGCC 2 cut(s) 137, 387
BsiSI CCGG 3 cut(s) 56, 123, 401
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 3 cut(s) 28, 337, 581
BsmAI GTCTC 3 cut(s) 52, 317, 364
BsmFI GGGAC 1 cut(s) 111
BsnI GGCC 2 cut(s) 137, 387
Bsp120I GGGCCC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 139
BspACI CCGC 4 cut(s) 84, 237, 505, 575
BspANI GGCC 2 cut(s) 137, 387
BspCNI CTCAG 2 cut(s) 56, 340
BspLI GGNNCC 2 cut(s) 127, 137
BsrFI RCCGGY 1 cut(s) 400
BsrI ACTGG 1 cut(s) 652
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 365
Bst4CI ACNGT 3 cut(s) 15, 71, 366
Bst6I CTCTTC 2 cut(s) 163, 257
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 4 cut(s) 43, 192, 348, 675
BstDSI CCRYGG 1 cut(s) 365
BstEII GGTNACC 1 cut(s) 594
BstF5I GGATG 1 cut(s) 648
BstMAI GTCTC 3 cut(s) 52, 317, 364
BstNSI RCATGY 1 cut(s) 400
BstPI GGTNACC 1 cut(s) 594
BstSLI GKGCMC 1 cut(s) 139
BstV1I GCAGC 7 cut(s) 128, 161, 416, 486, 493, 564, 606
BstV2I GAAGAC 1 cut(s) 149
BstXI CCANNNNNNTGG 1 cut(s) 112
Bsu36I CCTNAGG 1 cut(s) 348
BsuRI GGCC 2 cut(s) 137, 387
BtgI CCRYGG 1 cut(s) 365
BtsCI GGATG 1 cut(s) 648
BtsIMutI CAGTG 1 cut(s) 11
Cac8I GCNNGC 1 cut(s) 402
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 4 cut(s) 125, 135, 136, 386
Csp6I GTAC 2 cut(s) 312, 671
CviAII CATG 3 cut(s) 397, 469, 637
CviQI GTAC 2 cut(s) 312, 671
DdeI CTNAG 4 cut(s) 43, 192, 348, 675
Eam1104I CTCTTC 2 cut(s) 163, 257
EarI CTCTTC 2 cut(s) 163, 257
Eco24I GRGCYC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 125
Eco81I CCTNAGG 1 cut(s) 348
Eco91I GGTNACC 1 cut(s) 594
EcoO65I GGTNACC 1 cut(s) 594
EcoT38I GRGCYC 1 cut(s) 139
FaeI CATG 3 cut(s) 400, 472, 640
FaiI YATR 9 cut(s) 149, 297, 375, 398, 470, 496, 549, 612, 638
FaqI GGGAC 1 cut(s) 111
FatI CATG 3 cut(s) 396, 468, 636
FauI CCCGC 1 cut(s) 582
Fnu4HI GCNGC 7 cut(s) 117, 175, 430, 482, 500, 578, 620
FokI GGATG 1 cut(s) 635
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 7 cut(s) 117, 175, 430, 482, 500, 578, 620
FspBI CTAG 1 cut(s) 540
GluI GCNGC 7 cut(s) 117, 175, 430, 482, 500, 578, 620
HaeIII GGCC 2 cut(s) 137, 387
HapII CCGG 3 cut(s) 56, 123, 401
Hin1II CATG 3 cut(s) 400, 472, 640
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 3 cut(s) 228, 299, 442
HpaII CCGG 3 cut(s) 56, 123, 401
HphI GGTGA 4 cut(s) 73, 178, 239, 588
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 2 cut(s) 304, 584
Hpy188III TCNNGA 5 cut(s) 225, 347, 439, 520, 565
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 2 cut(s) 196, 377
HpyCH4III ACNGT 3 cut(s) 15, 71, 366
HpyCH4V TGCA 4 cut(s) 4, 259, 362, 622
HpyF3I CTNAG 4 cut(s) 43, 192, 348, 675
Hsp92II CATG 3 cut(s) 400, 472, 640
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
LmnI GCTCC 1 cut(s) 507
Lsp1109I GCAGC 7 cut(s) 128, 161, 416, 486, 493, 564, 606
LweI GCATC 5 cut(s) 72, 365, 570, 606, 688
MaeI CTAG 1 cut(s) 540
MaeIII GTNAC 2 cut(s) 565, 594
MboII GAAGA 3 cut(s) 154, 180, 244
MhlI GDGCHC 1 cut(s) 139
MluCI AATT 3 cut(s) 106, 534, 623
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 8 cut(s) 32, 50, 164, 168, 191, 260, 341, 343
MroNI GCCGGC 1 cut(s) 400
MseI TTAA 5 cut(s) 411, 465, 512, 602, 691
MslI CAYNNNNRTG 1 cut(s) 267
MspA1I CMGCKG 1 cut(s) 577
MspI CCGG 3 cut(s) 56, 123, 401
NaeI GCCGGC 1 cut(s) 402
NgoMIV GCCGGC 1 cut(s) 400
NlaIII CATG 3 cut(s) 400, 472, 640
NlaIV GGNNCC 2 cut(s) 127, 137
NmuCI GTSAC 2 cut(s) 565, 594
NspI RCATGY 1 cut(s) 400
OliI CACNNNNGTG 1 cut(s) 267
PdiI GCCGGC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 228, 442
PkrI GCNGC 7 cut(s) 118, 176, 431, 483, 501, 579, 621
PleI GAGTC 1 cut(s) 293
PpsI GAGTC 1 cut(s) 293
PspEI GGTNACC 1 cut(s) 594
PspN4I GGNNCC 2 cut(s) 127, 137
PspOMI GGGCCC 1 cut(s) 135
PspPI GGNCC 4 cut(s) 125, 135, 136, 386
RsaI GTAC 2 cut(s) 313, 672
RsaNI GTAC 2 cut(s) 312, 671
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 5 cut(s) 411, 465, 512, 602, 691
SatI GCNGC 7 cut(s) 117, 175, 430, 482, 500, 578, 620
Sau96I GGNCC 4 cut(s) 125, 135, 136, 386
SchI GAGTC 1 cut(s) 293
SduI GDGCHC 1 cut(s) 139
SetI ASST 6 cut(s) 11, 121, 183, 252, 465, 676
SfaNI GCATC 5 cut(s) 72, 365, 570, 606, 688
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 520
SmoI CTYRAG 1 cut(s) 520
Sse9I AATT 3 cut(s) 106, 534, 623
SsiI CCGC 4 cut(s) 84, 237, 505, 575
SspMI CTAG 1 cut(s) 540
TaaI ACNGT 3 cut(s) 15, 71, 366
TaqI TCGA 1 cut(s) 440
TasI AATT 3 cut(s) 106, 534, 623
TfiI GAWTC 2 cut(s) 228, 442
Tru1I TTAA 5 cut(s) 411, 465, 512, 602, 691
Tru9I TTAA 5 cut(s) 411, 465, 512, 602, 691
TscAI CASTG 1 cut(s) 18
TseFI GTSAC 2 cut(s) 565, 594
TseI GCWGC 7 cut(s) 116, 174, 429, 481, 499, 577, 619
Tsp45I GTSAC 2 cut(s) 565, 594
TspDTI ATGAA 4 cut(s) 63, 215, 637, 678
TspRI CASTG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 125
XceI RCATGY 1 cut(s) 400
XspI CTAG 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.