Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002867.1

Orthogroup ID

OG0005834

Physical Location & Seq

Genomic Coordinates Reverse (-)

86414 .. 87151

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002867.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

atgctttctttcaatgagttgttgttggagagaaaatatcccaggggatacaacttcccctcctcctggtcgccgtcggtggtcaacatgaaagacggtgcagattccatcacgagctcagctgcttccctgagccacaaggaagccgagaggcggcgcaggcagcgtatcaacacccacctctccaccctccgttctctccttcccagcacctccagaacggacaaggcgtcgctgctggcggaggtggtgcaacacgtgaaggacttgaaggggcgggctgatgagctggcgacacaggagggagactcgtcgccttttcccggggagttggacgaggcgagtgtgagttactacggcgaagggcttttgaaggcgacgctttgctgcgaggataggccgggtctgaaccgggacttggtccaggcgatccggtcggttcgggtcaggccggttaaggccgagatggtgacggtcggtggaagaactaagagtgtggtggtgatgaagccgactggtggcggcggcggggaggaggaggtgaaggatttgaaggtggctttgaaagcggtggtggagaatcgagccttcggttcccgggtcggtctattggggaagcgggctcggttttacgggtcggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

214

Amino Acids

23.36

Weight (kDa)

9.59

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38070
fragaria_vesca	FvH4_1g19780 FvH4_5g35460
malus_domestica	MD15G1314000.v1.1 MD15G1384300.v1.1
prunus_persica	Prupe.1G530800_v2.0.a1 Prupe.6G198500_v2.0.a1
pyrus_communis	pycom15g34430
rosa_chinensis	RchiOBHm_Chr2g0111351 RchiOBHm_Chr7g0236841
rosa_laevigata	RLG00000001057 RLG00000017888
rosa_multiflora	Rmu_sc0002867.1_g000019 Rmu_ssc0000075.1_g000002
rosa_roxburghii	Rroxscaffold_2G00132470 Rroxscaffold_3G00224780
rosa_rugosa	Rorug02G0172900 Rorug07G0299800
rosa_samantha	Rh2AG226100 Rh2BG237900 Rh2CG229100 Rh2DG233600 Rh7AG455000 Rh7BG426200 Rh7CG473700 Rh7DG443000
rosa_wichuraiana	Rw2G017460 Rw7G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	154, 242, 277, 522, 525, 528, 569, 619
AclWI	GGATC	1 cut(s)	424
AcvI	CACGTG	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	230
AfiI	CCNNNNNNNGG	5 cut(s)	66, 153, 323, 418, 518
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	5 cut(s)	13, 271, 373, 553, 565
AhdI	GACNNNNNGTC	1 cut(s)	229
AjnI	CCWGG	3 cut(s)	41, 65, 423
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	3 cut(s)	117, 122, 289
AluI	AGCT	3 cut(s)	117, 122, 289
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	424
Ama87I	CYCGRG	2 cut(s)	323, 597
AoxI	GGCC	3 cut(s)	398, 449, 459
ApeKI	GCWGC	4 cut(s)	122, 163, 235, 387
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	1 cut(s)	421
AsuC2I	CCSGG	6 cut(s)	324, 325, 402, 413, 598, 599
AsuHPI	GGTGA	3 cut(s)	481, 514, 553
AvaI	CYCGRG	2 cut(s)	323, 597
AvaII	GGWCC	1 cut(s)	421
BanII	GRGCYC	2 cut(s)	119, 625
BauI	CACGAG	1 cut(s)	112
BbrPI	CACGTG	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	4 cut(s)	109, 175, 222, 374
BccI	CCATC	2 cut(s)	116, 460
BceAI	ACGGC	2 cut(s)	58, 373
BciT130I	CCWGG	3 cut(s)	43, 67, 425
BciVI	GTATCC	1 cut(s)	41
BcnI	CCSGG	6 cut(s)	324, 325, 402, 413, 598, 599
BcoDI	GTCTC	1 cut(s)	300
BfuI	GTATCC	1 cut(s)	41
BisI	GCNGC	7 cut(s)	123, 155, 164, 236, 388, 523, 526
BlpI	GCTNAGC	1 cut(s)	118
BlsI	GCNGC	7 cut(s)	124, 156, 165, 237, 389, 524, 527
Bme1390I	CCNGG	9 cut(s)	43, 67, 324, 325, 402, 413, 425, 598, 599
Bme18I	GGWCC	1 cut(s)	421
BmeRI	GACNNNNNGTC	1 cut(s)	229
BmeT110I	CYCGRG	2 cut(s)	323, 597
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	9 cut(s)	43, 67, 324, 325, 402, 413, 425, 598, 599
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
BpmI	CTGGAG	1 cut(s)	199
Bpu10I	CCTNAGC	1 cut(s)	131
Bpu1102I	GCTNAGC	1 cut(s)	118
BpuMI	CCSGG	6 cut(s)	324, 325, 402, 413, 598, 599
BsaAI	YACGTR	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	230
BsaJI	CCNNGG	5 cut(s)	41, 42, 323, 324, 597
BsaWI	WCCGGW	1 cut(s)	432
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 153, 323, 418, 518
Bse118I	RCCGGY	1 cut(s)	451
Bse1I	ACTGG	1 cut(s)	520
BseBI	CCWGG	3 cut(s)	43, 67, 425
BseDI	CCNNGG	5 cut(s)	41, 42, 323, 324, 597
BseLI	CCNNNNNNNGG	5 cut(s)	66, 153, 323, 418, 518
BseMII	CTCAG	2 cut(s)	122, 132
BseNI	ACTGG	1 cut(s)	520
BseRI	GAGGAG	3 cut(s)	52, 548, 551
BseXI	GCAGC	4 cut(s)	109, 175, 222, 374
BseYI	CCCAGC	1 cut(s)	206
BsgI	GTGCAG	1 cut(s)	120
Bsh1285I	CGRYCG	2 cut(s)	437, 477
BshFI	GGCC	3 cut(s)	400, 451, 461
BsiEI	CGRYCG	2 cut(s)	437, 477
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	2 cut(s)	323, 597
BsiSI	CCGG	6 cut(s)	324, 401, 412, 433, 452, 598
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	5 cut(s)	66, 153, 323, 418, 518
BsmAI	GTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	3 cut(s)	400, 451, 461
BsoBI	CYCGRG	2 cut(s)	323, 597
Bsp1286I	GDGCHC	2 cut(s)	119, 625
Bsp143I	GATC	1 cut(s)	429
Bsp1720I	GCTNAGC	1 cut(s)	118
BspACI	CCGC	8 cut(s)	154, 242, 277, 522, 525, 528, 569, 619
BspANI	GGCC	3 cut(s)	400, 451, 461
BspCNI	CTCAG	2 cut(s)	123, 131
BspLI	GGNNCC	1 cut(s)	595
BspPI	GGATC	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	451
BsrI	ACTGG	1 cut(s)	520
BssAI	RCCGGY	1 cut(s)	451
BssECI	CCNNGG	5 cut(s)	41, 42, 323, 324, 597
BssMI	GATC	1 cut(s)	429
BssNI	GRCGYC	1 cut(s)	230
BssSI	CACGAG	1 cut(s)	112
Bst2BI	CACGAG	1 cut(s)	112
Bst2UI	CCWGG	3 cut(s)	43, 67, 425
Bst4CI	ACNGT	2 cut(s)	98, 475
BstACI	GRCGYC	1 cut(s)	230
BstBAI	YACGTR	1 cut(s)	259
BstC8I	GCNNGC	5 cut(s)	161, 240, 279, 291, 621
BstDEI	CTNAG	3 cut(s)	118, 131, 489
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	1 cut(s)	432
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	429
BstMCI	CGRYCG	2 cut(s)	437, 477
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 163, 566
BstNI	CCWGG	3 cut(s)	43, 67, 425
BstSCI	CCNGG	9 cut(s)	41, 65, 322, 323, 400, 411, 423, 596, 597
BstV1I	GCAGC	4 cut(s)	109, 175, 222, 374
BsuI	GTATCC	1 cut(s)	41
BsuRI	GGCC	3 cut(s)	400, 451, 461
Cac8I	GCNNGC	5 cut(s)	161, 240, 279, 291, 621
CfoI	GCGC	1 cut(s)	159
Cfr10I	RCCGGY	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	421
Cfr9I	CCCGGG	2 cut(s)	323, 597
CseI	GACGC	2 cut(s)	219, 388
CviAII	CATG	1 cut(s)	88
DdeI	CTNAG	3 cut(s)	118, 131, 489
DpnI	GATC	1 cut(s)	431
DpnII	GATC	1 cut(s)	429
DriI	GACNNNNNGTC	1 cut(s)	229
Eam1105I	GACNNNNNGTC	1 cut(s)	229
EciI	GGCGGA	1 cut(s)	257
Ecl136II	GAGCTC	1 cut(s)	117
Eco24I	GRGCYC	2 cut(s)	119, 625
Eco47I	GGWCC	1 cut(s)	421
Eco53kI	GAGCTC	1 cut(s)	117
Eco72I	CACGTG	1 cut(s)	259
Eco88I	CYCGRG	2 cut(s)	323, 597
EcoICRI	GAGCTC	1 cut(s)	117
EcoRII	CCWGG	3 cut(s)	41, 65, 423
EcoT38I	GRGCYC	2 cut(s)	119, 625
FaeI	CATG	1 cut(s)	91
FaiI	YATR	1 cut(s)	89
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	1 cut(s)	87
FauI	CCCGC	3 cut(s)	270, 521, 612
Fnu4HI	GCNGC	7 cut(s)	123, 155, 164, 236, 388, 523, 526
FriOI	GRGCYC	2 cut(s)	119, 625
Fsp4HI	GCNGC	7 cut(s)	123, 155, 164, 236, 388, 523, 526
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	7 cut(s)	123, 155, 164, 236, 388, 523, 526
GsaI	CCCAGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	3 cut(s)	400, 451, 461
HapII	CCGG	6 cut(s)	324, 401, 412, 433, 452, 598
HgaI	GACGC	2 cut(s)	219, 388
HhaI	GCGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	3 cut(s)	104, 308, 580
HpaII	CCGG	6 cut(s)	324, 401, 412, 433, 452, 598
HphI	GGTGA	3 cut(s)	481, 514, 553
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	2 cut(s)	112, 216
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	4 cut(s)	79, 235, 316, 382
HpyAV	CCTTC	8 cut(s)	212, 256, 265, 356, 367, 538, 547, 598
HpyCH4III	ACNGT	2 cut(s)	98, 475
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	2 cut(s)	101, 253
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 163, 566
HpyF3I	CTNAG	3 cut(s)	118, 131, 489
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	429
Lsp1109I	GCAGC	4 cut(s)	109, 175, 222, 374
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	350, 469
MalI	GATC	1 cut(s)	431
MboI	GATC	1 cut(s)	429
MboII	GAAGA	1 cut(s)	495
MhlI	GDGCHC	2 cut(s)	119, 625
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	2 cut(s)	6, 312
MseI	TTAA	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	6 cut(s)	324, 401, 412, 433, 452, 598
MspR9I	CCNGG	9 cut(s)	43, 67, 324, 325, 402, 413, 425, 598, 599
MvaI	CCWGG	3 cut(s)	43, 67, 425
MwoI	GCNNNNNNNGC	3 cut(s)	160, 163, 566
NciI	CCSGG	6 cut(s)	324, 325, 402, 413, 598, 599
NdeII	GATC	1 cut(s)	429
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	595
NmeAIII	GCCGAG	2 cut(s)	172, 487
NmuCI	GTSAC	1 cut(s)	469
PasI	CCCWGGG	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PfeI	GAWTC	2 cut(s)	104, 580
PflFI	GACNNNGTC	1 cut(s)	419
PkrI	GCNGC	7 cut(s)	124, 156, 165, 237, 389, 524, 527
PleI	GAGTC	1 cut(s)	302
PmaCI	CACGTG	1 cut(s)	259
PmlI	CACGTG	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	302
Ppu21I	YACGTR	1 cut(s)	259
Psp124BI	GAGCTC	1 cut(s)	119
Psp6I	CCWGG	3 cut(s)	41, 65, 423
PspCI	CACGTG	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	3 cut(s)	41, 65, 423
PspN4I	GGNNCC	1 cut(s)	595
PspPI	GGNCC	1 cut(s)	421
PsyI	GACNNNGTC	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	122
SacI	GAGCTC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	7 cut(s)	123, 155, 164, 236, 388, 523, 526
Sau3AI	GATC	1 cut(s)	429
Sau96I	GGNCC	1 cut(s)	421
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	9 cut(s)	43, 67, 324, 325, 402, 413, 425, 598, 599
SduI	GDGCHC	2 cut(s)	119, 625
SetI	ASST	9 cut(s)	119, 124, 183, 215, 249, 261, 291, 543, 558
SinI	GGWCC	1 cut(s)	421
SmaI	CCCGGG	2 cut(s)	325, 599
SsiI	CCGC	8 cut(s)	154, 242, 277, 522, 525, 528, 569, 619
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	9 cut(s)	41, 65, 322, 323, 400, 411, 423, 596, 597
TaaI	ACNGT	2 cut(s)	98, 475
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	583
TaqII	GACCGA	1 cut(s)	593
TauI	GCSGC	3 cut(s)	157, 525, 528
TfiI	GAWTC	2 cut(s)	104, 580
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	4 cut(s)	122, 163, 235, 387
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	2 cut(s)	104, 521
TspGWI	ACGGA	2 cut(s)	182, 236
TspMI	CCCGGG	2 cut(s)	323, 597
Tth111I	GACNNNGTC	1 cut(s)	419
VpaK11BI	GGWCC	1 cut(s)	421
XmaI	CCCGGG	2 cut(s)	323, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.