RLG00000001057

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005834
Physical Location & Seq
Reverse (-)
9889597 .. 9891203
1607 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001057

Sequence Viewer

Length: 798 bp
ATGCTTTCTTTCAATGAGTTGTTGTTGGAGCGAAAATATCACAGGGGATACAACTTCCCCTCCTCCTGTTCGCCGTCGGTGGTCAACATGAAGGACGGTGCAGATTCCGTCACGAGCTCAGCTGCTTCCCTGAGCCACAAGGAAGCCGAGAGGCGGCGCAGGCAGCGTATCAACACCCACCTCTCCACCCTCCGTTCTCTCCTCCCCAGCACCGCCAGAACGGACAAAGCGTCGCTGCTGGCGGAGGTGGTGCAACACGTGAAGGACTTGAAGCGGCGGGCTGATGAGCTGGCGCGACAGGAGGGAGACTCGTCGCCTTTTCCAGGGGAGTTGGACGAGACGAGTGTCAGTTACTCCGGCGAAGGGCTTTTGAAGGCGACGCTTTGCTGCGAGGATAGGCCGGGTCTGAACCGGGACTTGGTCCAGGCGATCCGGTCGGTTCGGGTCAGGCCGGTTAAGGCGGAGATGGTGACGGTCGGTGGAAGGACTAAGAGTGTGGTGGTGATGAAGCGGACTGGTGGCGGCGGCGGGGAGGAGGAGGTGAAGGATTTGAAGGTGGCTTTGAAAGCGGTGGTGGAGAATCGGGCCTTCGGTTCCCGGGTCGGTCTATTGGGGAAGCGGGCTCGGTTTTACGGAACTTTTGTGATTGATCGTCTCTTGAATCTTGTTCTTGTTCTTCTTCTTCGCCAAAGCGGAAATGATGTTTTGGGTCGAGTGGGGGCCCATCTCTCGCATGTTCCAAGTGATCTGGAATTCTGGAAGACTATTACTGATAACGATATGGGTGGCATTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

266

Amino Acids

29.07

Weight (kDa)

9.61

Isoelectric Point (pI)

47.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 45 - 91 2.2e-12 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 295
AclWI GGATC 1 cut(s) 424
AcsI RAATTY 1 cut(s) 752
AcvI CACGTG 1 cut(s) 259
AfiI CCNNNNNNNGG 4 cut(s) 153, 323, 363, 418
AflIII ACRYGT 1 cut(s) 256
AgsI TTSAA 6 cut(s) 13, 271, 373, 553, 565, 661
AhdI GACNNNNNGTC 1 cut(s) 229
AjnI CCWGG 2 cut(s) 322, 423
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AluBI AGCT 3 cut(s) 117, 122, 289
AluI AGCT 3 cut(s) 117, 122, 289
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 3 cut(s) 300, 332, 659
AlwI GGATC 1 cut(s) 424
Ama87I CYCGRG 1 cut(s) 597
AoxI GGCC 4 cut(s) 398, 449, 585, 720
ApaI GGGCCC 1 cut(s) 724
ApeKI GCWGC 4 cut(s) 122, 163, 235, 387
ApoI RAATTY 1 cut(s) 752
AspLEI GCGC 2 cut(s) 159, 295
AspS9I GGNCC 4 cut(s) 421, 585, 720, 721
AsuC2I CCSGG 4 cut(s) 402, 413, 598, 599
AsuHPI GGTGA 3 cut(s) 481, 514, 553
AvaI CYCGRG 1 cut(s) 597
AvaII GGWCC 1 cut(s) 421
BaeGI GKGCMC 1 cut(s) 724
BanII GRGCYC 3 cut(s) 119, 625, 724
BauI CACGAG 1 cut(s) 112
BbrPI CACGTG 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 767
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 4 cut(s) 109, 175, 222, 374
BccI CCATC 2 cut(s) 460, 732
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 2 cut(s) 324, 425
BciVI GTATCC 1 cut(s) 41
BcnI CCSGG 4 cut(s) 402, 413, 598, 599
BcoDI GTCTC 3 cut(s) 300, 332, 659
BfuI GTATCC 1 cut(s) 41
BisI GCNGC 8 cut(s) 123, 155, 164, 236, 275, 388, 523, 526
BlpI GCTNAGC 1 cut(s) 118
BlsI GCNGC 8 cut(s) 124, 156, 165, 237, 276, 389, 524, 527
Bme1390I CCNGG 6 cut(s) 324, 402, 413, 425, 598, 599
Bme18I GGWCC 1 cut(s) 421
BmeRI GACNNNNNGTC 1 cut(s) 229
BmeT110I CYCGRG 1 cut(s) 597
BmgT120I GGNCC 4 cut(s) 421, 585, 720, 721
BmiI GGNNCC 3 cut(s) 595, 721, 722
BmrFI CCNGG 6 cut(s) 324, 402, 413, 425, 598, 599
BoxI GACNNNNGTC 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 767
BplI GAGNNNNNCTC 2 cut(s) 293, 325
Bpu10I CCTNAGC 1 cut(s) 131
Bpu1102I GCTNAGC 1 cut(s) 118
BpuMI CCSGG 4 cut(s) 402, 413, 598, 599
BsaAI YACGTR 1 cut(s) 259
BsaJI CCNNGG 2 cut(s) 323, 597
BsaWI WCCGGW 1 cut(s) 432
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 323, 363, 418
Bse118I RCCGGY 1 cut(s) 451
Bse1I ACTGG 1 cut(s) 520
BseBI CCWGG 2 cut(s) 324, 425
BseDI CCNNGG 2 cut(s) 323, 597
BseLI CCNNNNNNNGG 4 cut(s) 153, 323, 363, 418
BseMII CTCAG 2 cut(s) 122, 132
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 4 cut(s) 52, 191, 548, 551
BseSI GKGCMC 1 cut(s) 724
BseXI GCAGC 4 cut(s) 109, 175, 222, 374
BseYI CCCAGC 1 cut(s) 206
BsgI GTGCAG 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 295
Bsh1285I CGRYCG 2 cut(s) 437, 477
BshFI GGCC 4 cut(s) 400, 451, 587, 722
BsiEI CGRYCG 2 cut(s) 437, 477
BsiHKAI GWGCWC 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 597
BsiSI CCGG 6 cut(s) 357, 401, 412, 433, 452, 598
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 4 cut(s) 153, 323, 363, 418
BsmAI GTCTC 3 cut(s) 300, 332, 659
BsmBI CGTCTC 2 cut(s) 332, 659
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 4 cut(s) 400, 451, 587, 722
BsoBI CYCGRG 1 cut(s) 597
Bsp120I GGGCCC 1 cut(s) 720
Bsp1286I GDGCHC 3 cut(s) 119, 625, 724
Bsp143I GATC 3 cut(s) 429, 649, 745
Bsp1720I GCTNAGC 1 cut(s) 118
BspANI GGCC 4 cut(s) 400, 451, 587, 722
BspCNI CTCAG 2 cut(s) 123, 131
BspFNI CGCG 1 cut(s) 295
BspLI GGNNCC 3 cut(s) 595, 721, 722
BspPI GGATC 1 cut(s) 424
BsrFI RCCGGY 1 cut(s) 451
BsrI ACTGG 1 cut(s) 520
BssAI RCCGGY 1 cut(s) 451
BssECI CCNNGG 2 cut(s) 323, 597
BssMI GATC 3 cut(s) 429, 649, 745
BssSI CACGAG 1 cut(s) 112
Bst2BI CACGAG 1 cut(s) 112
Bst2UI CCWGG 2 cut(s) 324, 425
Bst4CI ACNGT 2 cut(s) 98, 475
BstBAI YACGTR 1 cut(s) 259
BstC8I GCNNGC 5 cut(s) 161, 240, 279, 291, 621
BstDEI CTNAG 3 cut(s) 118, 131, 489
BstENI CCTNNNNNAGG 1 cut(s) 321
BstFNI CGCG 1 cut(s) 295
BstHHI GCGC 2 cut(s) 159, 295
BstKTI GATC 3 cut(s) 432, 652, 748
BstMAI GTCTC 3 cut(s) 300, 332, 659
BstMBI GATC 3 cut(s) 429, 649, 745
BstMCI CGRYCG 2 cut(s) 437, 477
BstMWI GCNNNNNNNGC 3 cut(s) 160, 163, 566
BstNI CCWGG 2 cut(s) 324, 425
BstNSI RCATGY 1 cut(s) 737
BstPAI GACNNNNGTC 1 cut(s) 344
BstSCI CCNGG 6 cut(s) 322, 400, 411, 423, 596, 597
BstSLI GKGCMC 1 cut(s) 724
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 4 cut(s) 109, 175, 222, 374
BstV2I GAAGAC 1 cut(s) 767
BsuI GTATCC 1 cut(s) 41
BsuRI GGCC 4 cut(s) 400, 451, 587, 722
Cac8I GCNNGC 5 cut(s) 161, 240, 279, 291, 621
CfoI GCGC 2 cut(s) 159, 295
Cfr10I RCCGGY 1 cut(s) 451
Cfr13I GGNCC 4 cut(s) 421, 585, 720, 721
Cfr9I CCCGGG 1 cut(s) 597
CseI GACGC 2 cut(s) 219, 388
CviAII CATG 2 cut(s) 88, 734
DdeI CTNAG 3 cut(s) 118, 131, 489
DpnI GATC 3 cut(s) 431, 651, 747
DpnII GATC 3 cut(s) 429, 649, 745
DriI GACNNNNNGTC 1 cut(s) 229
Eam1105I GACNNNNNGTC 1 cut(s) 229
EciI GGCGGA 2 cut(s) 257, 476
Ecl136II GAGCTC 1 cut(s) 117
Eco24I GRGCYC 3 cut(s) 119, 625, 724
Eco47I GGWCC 1 cut(s) 421
Eco53kI GAGCTC 1 cut(s) 117
Eco72I CACGTG 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 597
EcoICRI GAGCTC 1 cut(s) 117
EcoNI CCTNNNNNAGG 1 cut(s) 321
EcoO109I RGGNCCY 1 cut(s) 720
EcoRI GAATTC 1 cut(s) 752
EcoRII CCWGG 2 cut(s) 322, 423
EcoT38I GRGCYC 3 cut(s) 119, 625, 724
Esp3I CGTCTC 2 cut(s) 332, 659
FaeI CATG 2 cut(s) 91, 737
FaiI YATR 3 cut(s) 89, 735, 782
FaqI GGGAC 1 cut(s) 428
FatI CATG 2 cut(s) 87, 733
FauI CCCGC 3 cut(s) 270, 521, 612
Fnu4HI GCNGC 8 cut(s) 123, 155, 164, 236, 275, 388, 523, 526
FriOI GRGCYC 3 cut(s) 119, 625, 724
Fsp4HI GCNGC 8 cut(s) 123, 155, 164, 236, 275, 388, 523, 526
GlaI GCGC 2 cut(s) 158, 294
GluI GCNGC 8 cut(s) 123, 155, 164, 236, 275, 388, 523, 526
GsaI CCCAGC 1 cut(s) 210
HaeIII GGCC 4 cut(s) 400, 451, 587, 722
HapII CCGG 6 cut(s) 357, 401, 412, 433, 452, 598
HgaI GACGC 2 cut(s) 219, 388
HhaI GCGC 2 cut(s) 159, 295
Hin1II CATG 2 cut(s) 91, 737
Hin6I GCGC 2 cut(s) 157, 293
HinP1I GCGC 2 cut(s) 157, 293
HincII GTYRAC 1 cut(s) 85
HindII GTYRAC 1 cut(s) 85
HinfI GANTC 4 cut(s) 104, 308, 580, 661
HpaII CCGG 6 cut(s) 357, 401, 412, 433, 452, 598
HphI GGTGA 3 cut(s) 481, 514, 553
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 408
Hpy188III TCNNGA 4 cut(s) 112, 658, 749, 757
Hpy8I GTNNAC 1 cut(s) 85
Hpy99I CGWCG 4 cut(s) 79, 235, 316, 382
HpyAV CCTTC 8 cut(s) 85, 256, 356, 367, 477, 538, 547, 598
HpyCH4III ACNGT 2 cut(s) 98, 475
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 101, 253
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 163, 566
HpyF3I CTNAG 3 cut(s) 118, 131, 489
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 2 cut(s) 91, 737
HspAI GCGC 2 cut(s) 157, 293
Kzo9I GATC 3 cut(s) 429, 649, 745
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 4 cut(s) 109, 175, 222, 374
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 3 cut(s) 109, 350, 469
MalI GATC 3 cut(s) 431, 651, 747
MboI GATC 3 cut(s) 429, 649, 745
MboII GAAGA 4 cut(s) 668, 671, 674, 772
MhlI GDGCHC 3 cut(s) 119, 625, 724
MluCI AATT 1 cut(s) 752
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 2 cut(s) 6, 312
MseI TTAA 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 6 cut(s) 357, 401, 412, 433, 452, 598
MspR9I CCNGG 6 cut(s) 324, 402, 413, 425, 598, 599
MvaI CCWGG 2 cut(s) 324, 425
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 3 cut(s) 160, 163, 566
NciI CCSGG 4 cut(s) 402, 413, 598, 599
NdeII GATC 3 cut(s) 429, 649, 745
NlaIII CATG 2 cut(s) 91, 737
NlaIV GGNNCC 3 cut(s) 595, 721, 722
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 2 cut(s) 109, 469
NspI RCATGY 1 cut(s) 737
PcsI WCGNNNNNNNCGW 1 cut(s) 227
PfeI GAWTC 3 cut(s) 104, 580, 661
PflFI GACNNNGTC 1 cut(s) 419
PkrI GCNGC 8 cut(s) 124, 156, 165, 237, 276, 389, 524, 527
PleI GAGTC 1 cut(s) 302
PmaCI CACGTG 1 cut(s) 259
PmlI CACGTG 1 cut(s) 259
PpsI GAGTC 1 cut(s) 302
Ppu21I YACGTR 1 cut(s) 259
PshAI GACNNNNGTC 1 cut(s) 344
Psp124BI GAGCTC 1 cut(s) 119
Psp6I CCWGG 2 cut(s) 322, 423
PspCI CACGTG 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 206
PspGI CCWGG 2 cut(s) 322, 423
PspN4I GGNNCC 3 cut(s) 595, 721, 722
PspOMI GGGCCC 1 cut(s) 720
PspPI GGNCC 4 cut(s) 421, 585, 720, 721
PsyI GACNNNGTC 1 cut(s) 419
PvuII CAGCTG 1 cut(s) 122
SacI GAGCTC 1 cut(s) 119
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 8 cut(s) 123, 155, 164, 236, 275, 388, 523, 526
Sau3AI GATC 3 cut(s) 429, 649, 745
Sau96I GGNCC 4 cut(s) 421, 585, 720, 721
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 6 cut(s) 324, 402, 413, 425, 598, 599
SduI GDGCHC 3 cut(s) 119, 625, 724
SetI ASST 8 cut(s) 119, 124, 183, 249, 261, 291, 543, 558
SinI GGWCC 1 cut(s) 421
SmaI CCCGGG 1 cut(s) 599
Sse9I AATT 1 cut(s) 752
SstI GAGCTC 1 cut(s) 119
StyD4I CCNGG 6 cut(s) 322, 400, 411, 423, 596, 597
TaaI ACNGT 2 cut(s) 98, 475
TaiI ACGT 1 cut(s) 261
TaqI TCGA 1 cut(s) 712
TaqII GACCGA 1 cut(s) 593
TasI AATT 1 cut(s) 752
TauI GCSGC 4 cut(s) 157, 277, 525, 528
TfiI GAWTC 3 cut(s) 104, 580, 661
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TseFI GTSAC 2 cut(s) 109, 469
TseI GCWGC 4 cut(s) 122, 163, 235, 387
Tsp45I GTSAC 2 cut(s) 109, 469
TspDTI ATGAA 2 cut(s) 104, 521
TspGWI ACGGA 4 cut(s) 97, 182, 236, 648
TspMI CCCGGG 1 cut(s) 597
Tth111I GACNNNGTC 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 421
XagI CCTNNNNNAGG 1 cut(s) 321
XapI RAATTY 1 cut(s) 752
XceI RCATGY 1 cut(s) 737
XmaI CCCGGG 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.