Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000075.1

Orthogroup ID

OG0005834

Physical Location & Seq

Genomic Coordinates Forward (+)

13662 .. 15342

Gene Structure 1681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000075.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

atggacaaggcttctttgctcgcagagaccgtcggacaagtaagggagcttaagaaggtggtagcagatactgaagcagcatgtcgtggcagtggcagtgagtgtgttattcccagcggcgttaacaagttgagtttggagaagtgtgaaggcaagcaagaagggcttgtgaaagcaacatttagctgcgaggataggccagggctaatattggacatgattagggagctgaggtcagggaaagggagggtggtgagggcggagatggtgacagtaggtgggaggactaagagtgtgttgtgggtgaaagggttgggtgctggaagtgaagggatagtgtgccttaagaaggcattaaataaggtgattgttgacaggccaagcattattcagaagctacatctccctaacctagcctgcccaccctgtgcgggcacaacaccggcctccctgcctgcagcctgcccacccaggctcaacctctgccctgcacagcccttcactagcgtagatctcagcgccaccttgcccagctctgcacaacctatcgccgcgcacaacccatctgtacgcacgcctgctcagctcttggcacaacccatcttcttagatccccgcgactgctgtctagactctcgtccccgtcgcttctgcatcccagaacacctgactccgacgtcacgcttgacgccaacaacgcaccgaacacagtttgttgcactcgacctgtttttgggtccatttccagttgggctgttgacccaatctgactattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

258

Amino Acids

27.6

Weight (kDa)

8.96

Isoelectric Point (pI)

45.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38070
fragaria_vesca	FvH4_1g19780 FvH4_5g35460
malus_domestica	MD15G1314000.v1.1 MD15G1384300.v1.1
prunus_persica	Prupe.1G530800_v2.0.a1 Prupe.6G198500_v2.0.a1
pyrus_communis	pycom15g34430
rosa_chinensis	RchiOBHm_Chr2g0111351 RchiOBHm_Chr7g0236841
rosa_laevigata	RLG00000001057 RLG00000017888
rosa_multiflora	Rmu_sc0002867.1_g000019 Rmu_ssc0000075.1_g000002
rosa_roxburghii	Rroxscaffold_2G00132470 Rroxscaffold_3G00224780
rosa_rugosa	Rorug02G0172900 Rorug07G0299800
rosa_samantha	Rh2AG226100 Rh2BG237900 Rh2CG229100 Rh2DG233600 Rh7AG455000 Rh7BG426200 Rh7CG473700 Rh7DG443000
rosa_wichuraiana	Rw2G017460 Rw7G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	676
AatII	GACGTC	1 cut(s)	680
AccII	CGCG	2 cut(s)	554, 618
AciI	CCGC	5 cut(s)	117, 260, 431, 552, 616
AclWI	GGATC	1 cut(s)	605
AcuI	CTGAAG	1 cut(s)	93
AcyI	GRCGYC	2 cut(s)	677, 689
AdeI	CACNNNGTG	1 cut(s)	428
AfaI	GTAC	1 cut(s)	570
AfiI	CCNNNNNNNGG	3 cut(s)	349, 431, 733
AflII	CTTAAG	2 cut(s)	50, 344
AjnI	CCWGG	2 cut(s)	199, 470
AluBI	AGCT	6 cut(s)	49, 186, 229, 397, 534, 586
AluI	AGCT	6 cut(s)	49, 186, 229, 397, 534, 586
Alw26I	GTCTC	1 cut(s)	20
AlwI	GGATC	1 cut(s)	605
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	3 cut(s)	197, 377, 444
ApeKI	GCWGC	3 cut(s)	77, 186, 458
AspLEI	GCGC	2 cut(s)	521, 556
AspS9I	GGNCC	1 cut(s)	737
AsuHPI	GGTGA	4 cut(s)	265, 280, 316, 376
AvaII	GGWCC	1 cut(s)	737
BaeGI	GKGCMC	1 cut(s)	437
BbvCI	CCTCAGC	1 cut(s)	230
BbvI	GCAGC	3 cut(s)	89, 173, 470
BccI	CCATC	3 cut(s)	259, 571, 608
BciT130I	CCWGG	2 cut(s)	201, 472
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	3 cut(s)	413, 504, 629
BfmI	CTRYAG	1 cut(s)	456
BfoI	RGCGCY	1 cut(s)	522
BfrI	CTTAAG	2 cut(s)	50, 344
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	5 cut(s)	78, 118, 187, 459, 552
BlpI	GCTNAGC	1 cut(s)	582
BlsI	GCNGC	5 cut(s)	79, 119, 188, 460, 553
Bme1390I	CCNGG	2 cut(s)	201, 472
Bme18I	GGWCC	1 cut(s)	737
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	1 cut(s)	738
BmrFI	CCNGG	2 cut(s)	201, 472
BmsI	GCATC	1 cut(s)	663
BoxI	GACNNNNGTC	2 cut(s)	624, 636
Bpu10I	CCTNAGC	1 cut(s)	230
Bpu1102I	GCTNAGC	1 cut(s)	582
BsaHI	GRCGYC	2 cut(s)	677, 689
BsaI	GGTCTC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	200, 470
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	3 cut(s)	349, 431, 733
Bse118I	RCCGGY	1 cut(s)	442
Bse1I	ACTGG	1 cut(s)	746
BseBI	CCWGG	2 cut(s)	201, 472
BseDI	CCNNGG	2 cut(s)	200, 470
BseGI	GGATG	1 cut(s)	654
BseLI	CCNNNNNNNGG	3 cut(s)	349, 431, 733
BseMII	CTCAG	3 cut(s)	221, 529, 596
BseNI	ACTGG	1 cut(s)	746
BseSI	GKGCMC	1 cut(s)	437
BseXI	GCAGC	3 cut(s)	89, 173, 470
BseYI	CCCAGC	2 cut(s)	113, 530
BsgI	GTGCAG	2 cut(s)	474, 522
Bsh1236I	CGCG	2 cut(s)	554, 618
BshFI	GGCC	3 cut(s)	199, 379, 446
BsiSI	CCGG	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	624
BslI	CCNNNNNNNGG	3 cut(s)	349, 431, 733
BsmAI	GTCTC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	624
BsnI	GGCC	3 cut(s)	199, 379, 446
Bso31I	GGTCTC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	2 cut(s)	511, 610
Bsp1720I	GCTNAGC	1 cut(s)	582
BspACI	CCGC	5 cut(s)	117, 260, 431, 552, 616
BspANI	GGCC	3 cut(s)	199, 379, 446
BspCNI	CTCAG	3 cut(s)	222, 528, 595
BspFNI	CGCG	2 cut(s)	554, 618
BspLI	GGNNCC	1 cut(s)	738
BspMAI	CTGCAG	1 cut(s)	460
BspPI	GGATC	1 cut(s)	605
BspTI	CTTAAG	2 cut(s)	50, 344
BspTNI	GGTCTC	1 cut(s)	20
BsrFI	RCCGGY	1 cut(s)	442
BsrI	ACTGG	1 cut(s)	746
BssAI	RCCGGY	1 cut(s)	442
BssECI	CCNNGG	2 cut(s)	200, 470
BssMI	GATC	2 cut(s)	511, 610
BssNI	GRCGYC	2 cut(s)	677, 689
Bst2UI	CCWGG	2 cut(s)	201, 472
Bst4CI	ACNGT	3 cut(s)	31, 274, 711
BstACI	GRCGYC	2 cut(s)	677, 689
BstAFI	CTTAAG	2 cut(s)	50, 344
BstC8I	GCNNGC	8 cut(s)	21, 155, 418, 433, 456, 463, 575, 579
BstDEI	CTNAG	5 cut(s)	230, 288, 515, 582, 607
BstENI	CCTNNNNNAGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	654
BstFNI	CGCG	2 cut(s)	554, 618
BstH2I	RGCGCY	1 cut(s)	522
BstHHI	GCGC	2 cut(s)	521, 556
BstKTI	GATC	2 cut(s)	514, 613
BstMAI	GTCTC	1 cut(s)	20
BstMBI	GATC	2 cut(s)	511, 610
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 583, 697
BstNI	CCWGG	2 cut(s)	201, 472
BstNSI	RCATGY	1 cut(s)	84
BstPAI	GACNNNNGTC	2 cut(s)	624, 636
BstSCI	CCNGG	2 cut(s)	199, 470
BstSFI	CTRYAG	1 cut(s)	456
BstSLI	GKGCMC	1 cut(s)	437
BstUI	CGCG	2 cut(s)	554, 618
BstV1I	GCAGC	3 cut(s)	89, 173, 470
BstX2I	RGATCY	2 cut(s)	511, 610
BstYI	RGATCY	2 cut(s)	511, 610
BsuRI	GGCC	3 cut(s)	199, 379, 446
BtsCI	GGATG	1 cut(s)	654
BtsI	GCAGTG	2 cut(s)	97, 103
BtsIMutI	CAGTG	2 cut(s)	97, 103
Cac8I	GCNNGC	8 cut(s)	21, 155, 418, 433, 456, 463, 575, 579
CaiI	CAGNNNCTG	1 cut(s)	71
CfoI	GCGC	2 cut(s)	521, 556
Cfr10I	RCCGGY	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	737
CseI	GACGC	1 cut(s)	697
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	2 cut(s)	81, 217
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	5 cut(s)	230, 288, 515, 582, 607
DpnI	GATC	2 cut(s)	513, 612
DpnII	GATC	2 cut(s)	511, 610
DraIII	CACNNNGTG	1 cut(s)	428
DrdI	GACNNNNNNGTC	1 cut(s)	676
DseDI	GACNNNNNNGTC	1 cut(s)	676
EciI	GGCGGA	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	737
Eco57I	CTGAAG	1 cut(s)	93
EcoNI	CCTNNNNNAGG	1 cut(s)	347
EcoRII	CCWGG	2 cut(s)	199, 470
FaeI	CATG	2 cut(s)	84, 220
FaiI	YATR	2 cut(s)	82, 218
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	2 cut(s)	80, 216
FauI	CCCGC	2 cut(s)	424, 623
Fnu4HI	GCNGC	5 cut(s)	78, 118, 187, 459, 552
FokI	GGATG	1 cut(s)	641
Fsp4HI	GCNGC	5 cut(s)	78, 118, 187, 459, 552
FspBI	CTAG	3 cut(s)	413, 504, 629
GlaI	GCGC	2 cut(s)	520, 555
GluI	GCNGC	5 cut(s)	78, 118, 187, 459, 552
GsaI	CCCAGC	2 cut(s)	117, 534
HaeII	RGCGCY	1 cut(s)	522
HaeIII	GGCC	3 cut(s)	199, 379, 446
HapII	CCGG	1 cut(s)	443
HgaI	GACGC	1 cut(s)	697
HhaI	GCGC	2 cut(s)	521, 556
Hin1I	GRCGYC	2 cut(s)	677, 689
Hin1II	CATG	2 cut(s)	84, 220
Hin6I	GCGC	2 cut(s)	519, 554
HinP1I	GCGC	2 cut(s)	519, 554
HincII	GTYRAC	3 cut(s)	124, 373, 759
HindII	GTYRAC	3 cut(s)	124, 373, 759
HinfI	GANTC	2 cut(s)	632, 670
HpaI	GTTAAC	1 cut(s)	124
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	4 cut(s)	265, 280, 316, 376
Hpy166II	GTNNAC	3 cut(s)	124, 373, 759
Hpy188I	TCNGA	4 cut(s)	35, 393, 675, 769
Hpy188III	TCNNGA	1 cut(s)	629
Hpy8I	GTNNAC	3 cut(s)	124, 373, 759
Hpy99I	CGWCG	3 cut(s)	35, 648, 679
HpyAV	CCTTC	6 cut(s)	49, 143, 155, 323, 343, 508
HpyCH4III	ACNGT	3 cut(s)	31, 274, 711
HpyCH4IV	ACGT	1 cut(s)	677
HpyCH4V	TGCA	5 cut(s)	458, 491, 539, 654, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 583, 697
HpyF3I	CTNAG	5 cut(s)	230, 288, 515, 582, 607
HpySE526I	ACGT	1 cut(s)	677
Hsp92I	GRCGYC	2 cut(s)	677, 689
Hsp92II	CATG	2 cut(s)	84, 220
HspAI	GCGC	2 cut(s)	519, 554
KspAI	GTTAAC	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	511, 610
LmnI	GCTCC	2 cut(s)	46, 226
Lsp1109I	GCAGC	3 cut(s)	89, 173, 470
LweI	GCATC	1 cut(s)	663
MaeI	CTAG	3 cut(s)	413, 504, 629
MaeII	ACGT	1 cut(s)	677
MaeIII	GTNAC	2 cut(s)	268, 678
MalI	GATC	2 cut(s)	513, 612
MboI	GATC	2 cut(s)	511, 610
MboII	GAAGA	1 cut(s)	595
MflI	RGATCY	2 cut(s)	511, 610
MhlI	GDGCHC	1 cut(s)	437
MlyI	GAGTC	2 cut(s)	626, 664
MmeI	TCCRAC	2 cut(s)	13, 698
MnlI	CCTC	7 cut(s)	184, 225, 240, 249, 276, 457, 491
MseI	TTAA	5 cut(s)	51, 123, 345, 356, 775
MspA1I	CMGCKG	1 cut(s)	117
MspCI	CTTAAG	2 cut(s)	50, 344
MspI	CCGG	1 cut(s)	443
MspR9I	CCNGG	2 cut(s)	201, 472
MvaI	CCWGG	2 cut(s)	201, 472
MvnI	CGCG	2 cut(s)	554, 618
MwoI	GCNNNNNNNGC	3 cut(s)	163, 583, 697
NdeII	GATC	2 cut(s)	511, 610
NlaIII	CATG	2 cut(s)	84, 220
NlaIV	GGNNCC	1 cut(s)	738
NmuCI	GTSAC	2 cut(s)	268, 678
NspI	RCATGY	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PkrI	GCNGC	5 cut(s)	79, 119, 188, 460, 553
PleI	GAGTC	2 cut(s)	626, 664
PpsI	GAGTC	2 cut(s)	626, 664
PshAI	GACNNNNGTC	2 cut(s)	624, 636
Psp6I	CCWGG	2 cut(s)	199, 470
PspFI	CCCAGC	2 cut(s)	113, 530
PspGI	CCWGG	2 cut(s)	199, 470
PspN4I	GGNNCC	1 cut(s)	738
PspPI	GGNCC	1 cut(s)	737
PstI	CTGCAG	1 cut(s)	460
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	2 cut(s)	511, 610
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
SaqAI	TTAA	5 cut(s)	51, 123, 345, 356, 775
SatI	GCNGC	5 cut(s)	78, 118, 187, 459, 552
Sau3AI	GATC	2 cut(s)	511, 610
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	2 cut(s)	626, 664
ScrFI	CCNGG	2 cut(s)	201, 472
SduI	GDGCHC	1 cut(s)	437
SfaNI	GCATC	1 cut(s)	663
SfcI	CTRYAG	1 cut(s)	456
SinI	GGWCC	1 cut(s)	737
SmlI	CTYRAG	2 cut(s)	50, 344
SmoI	CTYRAG	2 cut(s)	50, 344
SsiI	CCGC	5 cut(s)	117, 260, 431, 552, 616
SspI	AATATT	1 cut(s)	210
SspMI	CTAG	3 cut(s)	413, 504, 629
StyD4I	CCNGG	2 cut(s)	199, 470
TaaI	ACNGT	3 cut(s)	31, 274, 711
TaiI	ACGT	1 cut(s)	680
TaqI	TCGA	1 cut(s)	723
TauI	GCSGC	2 cut(s)	120, 554
Tru1I	TTAA	5 cut(s)	51, 123, 345, 356, 775
Tru9I	TTAA	5 cut(s)	51, 123, 345, 356, 775
TscAI	CASTG	2 cut(s)	97, 103
TseFI	GTSAC	2 cut(s)	268, 678
TseI	GCWGC	3 cut(s)	77, 186, 458
Tsp45I	GTSAC	2 cut(s)	268, 678
TspRI	CASTG	2 cut(s)	97, 103
Vha464I	CTTAAG	2 cut(s)	50, 344
VpaK11BI	GGWCC	1 cut(s)	737
XagI	CCTNNNNNAGG	1 cut(s)	347
XbaI	TCTAGA	1 cut(s)	628
XceI	RCATGY	1 cut(s)	84
XspI	CTAG	3 cut(s)	413, 504, 629
ZraI	GACGTC	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.