Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005834

Physical Location & Seq

Genomic Coordinates Reverse (-)

43387266 .. 43388543

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G530800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCTTCCTTTCCTGAGCTGGTCTGATCAAAATCACTACGCACACGACCCGTCGCTGGTCAACCTGATGGACGGCGCAGATTCCATCCTGAGCCCAGCAGCCTCCATGACCGAGACCTCCAGGTCAGCAGAAGCATCCAAGAGCCACAAGGAAGCCGAGAGGAGACGCAGGCAGCGTATCAACACCCACCTCTCCACCCTCCGCACTCTCCTCCCCAACACCACCCGGACGGACAAGGCGTCGTTGCTAGCGGAGGTGGTGCAGCACGTTCGGGAGCTGAGGAGGCAGGCTGGTGACCTTGCGCGACAGGACGGGGGCTCGTGCTGCGGTGGCAGCACCGGTTCGGAGCCCTGGCCGTTTCCGGGCGAGTCGGACGAGGCCACGGTGAGCTATTGCGACGGCGAGGCGAGGCTTCTGAAGGCGACGCTGTGTTGCGAGGATAGGCCGGGTCTGAACCGGGACTTGATCCAGGCGATCCGGTCCGTTCAGGCCAGGGCGATCCGGGCCGAGATGATGACTGTTGGGGGGCGGACCAAGAATGTGGTTGTGATGCAATGGGCCGGCGGTGGCGGGGAGGAGGAGGTTAGGGCTTTGAAGCGGGCTTTGAAGGCTGTGGTGGAGAATCGGGCCTCAGGTTGTGGGCCGGGTCGGTTGGTTTTGGGGAAAAAGCGAGCTCGGGTTTATGGGTCGGTTTATGAGGATGAGAATGAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

239

Amino Acids

26.08

Weight (kDa)

8.55

Isoelectric Point (pI)

50.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38070
fragaria_vesca	FvH4_1g19780 FvH4_5g35460
malus_domestica	MD15G1314000.v1.1 MD15G1384300.v1.1
prunus_persica	Prupe.1G530800_v2.0.a1 Prupe.6G198500_v2.0.a1
pyrus_communis	pycom15g34430
rosa_chinensis	RchiOBHm_Chr2g0111351 RchiOBHm_Chr7g0236841
rosa_laevigata	RLG00000001057 RLG00000017888
rosa_multiflora	Rmu_sc0002867.1_g000019 Rmu_ssc0000075.1_g000002
rosa_roxburghii	Rroxscaffold_2G00132470 Rroxscaffold_3G00224780
rosa_rugosa	Rorug02G0172900 Rorug07G0299800
rosa_samantha	Rh2AG226100 Rh2BG237900 Rh2CG229100 Rh2DG233600 Rh7AG455000 Rh7BG426200 Rh7CG473700 Rh7DG443000
rosa_wichuraiana	Rw2G017460 Rw7G037770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	121
AccII	CGCG	1 cut(s)	304
AciI	CCGC	7 cut(s)	202, 251, 327, 529, 564, 570, 598
AclWI	GGATC	3 cut(s)	460, 469, 493
AcoI	YGGCCR	1 cut(s)	353
AcuI	CTGAAG	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	55, 362
AgeI	ACCGGT	1 cut(s)	338
AgsI	TTSAA	2 cut(s)	595, 607
AhdI	GACNNNNNGTC	1 cut(s)	238
AjnI	CCWGG	4 cut(s)	119, 350, 468, 491
AluBI	AGCT	4 cut(s)	18, 277, 390, 674
AluI	AGCT	4 cut(s)	18, 277, 390, 674
Alw21I	GWGCWC	1 cut(s)	676
Alw26I	GTCTC	2 cut(s)	107, 157
AlwI	GGATC	3 cut(s)	460, 469, 493
Ama87I	CYCGRG	1 cut(s)	675
AoxI	GGCC	8 cut(s)	353, 378, 443, 489, 504, 558, 627, 641
ApeKI	GCWGC	5 cut(s)	98, 172, 262, 324, 333
AsiGI	ACCGGT	1 cut(s)	338
AspLEI	GCGC	2 cut(s)	77, 304
AspS9I	GGNCC	6 cut(s)	480, 504, 531, 558, 627, 641
AsuC2I	CCSGG	6 cut(s)	226, 363, 447, 458, 503, 645
AsuHPI	GGTGA	2 cut(s)	305, 397
AsuNHI	GCTAGC	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	675
AvaII	GGWCC	2 cut(s)	480, 531
AxyI	CCTNAGG	1 cut(s)	631
BanII	GRGCYC	4 cut(s)	95, 320, 351, 676
BauI	CACGAG	1 cut(s)	319
Bbv12I	GWGCWC	1 cut(s)	676
BbvCI	CCTCAGC	1 cut(s)	278
BbvI	GCAGC	5 cut(s)	110, 184, 274, 311, 345
BccI	CCATC	2 cut(s)	61, 92
BceAI	ACGGC	3 cut(s)	88, 340, 415
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	4 cut(s)	121, 352, 470, 493
BclI	TGATCA	1 cut(s)	25
BcnI	CCSGG	6 cut(s)	226, 363, 447, 458, 503, 645
BcoDI	GTCTC	2 cut(s)	107, 157
BfaI	CTAG	1 cut(s)	248
BisI	GCNGC	5 cut(s)	99, 173, 263, 325, 334
BlsI	GCNGC	5 cut(s)	100, 174, 264, 326, 335
Bme18I	GGWCC	2 cut(s)	480, 531
BmeRI	GACNNNNNGTC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	675
BmgT120I	GGNCC	6 cut(s)	480, 504, 531, 558, 627, 641
BmiI	GGNNCC	1 cut(s)	348
BmsI	GCATC	2 cut(s)	143, 540
BmtI	GCTAGC	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	103
Bpu10I	CCTNAGC	3 cut(s)	14, 89, 278
BpuMI	CCSGG	6 cut(s)	226, 363, 447, 458, 503, 645
BsaBI	GATNNNNATC	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	350, 381, 492
BsaWI	WCCGGW	2 cut(s)	338, 477
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 362
Bse118I	RCCGGY	2 cut(s)	338, 560
Bse21I	CCTNAGG	1 cut(s)	631
Bse3DI	GCAATG	1 cut(s)	560
Bse8I	GATNNNNATC	1 cut(s)	30
BseBI	CCWGG	4 cut(s)	121, 352, 470, 493
BseDI	CCNNGG	3 cut(s)	350, 381, 492
BseGI	GGATG	3 cut(s)	84, 134, 706
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	2 cut(s)	55, 362
BseMI	GCAATG	1 cut(s)	560
BseMII	CTCAG	4 cut(s)	5, 80, 269, 645
BseRI	GAGGAG	5 cut(s)	175, 200, 295, 590, 593
BseXI	GCAGC	5 cut(s)	110, 184, 274, 311, 345
BseYI	CCCAGC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	281
Bsh1236I	CGCG	1 cut(s)	304
BshFI	GGCC	8 cut(s)	355, 380, 445, 491, 506, 560, 629, 643
BshTI	ACCGGT	1 cut(s)	338
BsiHKAI	GWGCWC	1 cut(s)	676
BsiHKCI	CYCGRG	1 cut(s)	675
BsiSI	CCGG	9 cut(s)	226, 339, 362, 446, 457, 478, 502, 561, 644
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	2 cut(s)	55, 362
BsmAI	GTCTC	2 cut(s)	107, 157
BsmBI	CGTCTC	1 cut(s)	157
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	8 cut(s)	355, 380, 445, 491, 506, 560, 629, 643
Bso31I	GGTCTC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	675
Bsp1286I	GDGCHC	4 cut(s)	95, 320, 351, 676
Bsp143I	GATC	4 cut(s)	25, 465, 474, 498
BspACI	CCGC	7 cut(s)	202, 251, 327, 529, 564, 570, 598
BspANI	GGCC	8 cut(s)	355, 380, 445, 491, 506, 560, 629, 643
BspCNI	CTCAG	4 cut(s)	6, 81, 270, 644
BspFNI	CGCG	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	348
BspOI	GCTAGC	1 cut(s)	251
BspPI	GGATC	3 cut(s)	460, 469, 493
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	1 cut(s)	560
BsrFI	RCCGGY	2 cut(s)	338, 560
BssAI	RCCGGY	2 cut(s)	338, 560
BssECI	CCNNGG	3 cut(s)	350, 381, 492
BssMI	GATC	4 cut(s)	25, 465, 474, 498
BssNI	GRCGYC	1 cut(s)	239
BssSI	CACGAG	1 cut(s)	319
Bst2BI	CACGAG	1 cut(s)	319
Bst2UI	CCWGG	4 cut(s)	121, 352, 470, 493
Bst4CI	ACNGT	2 cut(s)	385, 520
BstACI	GRCGYC	1 cut(s)	239
BstC8I	GCNNGC	6 cut(s)	170, 249, 288, 562, 600, 672
BstDEI	CTNAG	4 cut(s)	14, 89, 278, 631
BstDSI	CCRYGG	1 cut(s)	381
BstEII	GGTNACC	1 cut(s)	293
BstF5I	GGATG	3 cut(s)	84, 134, 706
BstFNI	CGCG	1 cut(s)	304
BstHHI	GCGC	2 cut(s)	77, 304
BstKTI	GATC	4 cut(s)	28, 468, 477, 501
BstMAI	GTCTC	2 cut(s)	107, 157
BstMBI	GATC	4 cut(s)	25, 465, 474, 498
BstMWI	GCNNNNNNNGC	6 cut(s)	283, 324, 330, 333, 503, 608
BstNI	CCWGG	4 cut(s)	121, 352, 470, 493
BstPI	GGTNACC	1 cut(s)	293
BstUI	CGCG	1 cut(s)	304
BstV1I	GCAGC	5 cut(s)	110, 184, 274, 311, 345
BstXI	CCANNNNNNTGG	1 cut(s)	541
Bsu36I	CCTNAGG	1 cut(s)	631
BsuRI	GGCC	8 cut(s)	355, 380, 445, 491, 506, 560, 629, 643
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	3 cut(s)	84, 134, 706
Cac8I	GCNNGC	6 cut(s)	170, 249, 288, 562, 600, 672
CfoI	GCGC	2 cut(s)	77, 304
Cfr10I	RCCGGY	2 cut(s)	338, 560
Cfr13I	GGNCC	6 cut(s)	480, 504, 531, 558, 627, 641
CpoI	CGGWCCG	1 cut(s)	480
CseI	GACGC	3 cut(s)	174, 228, 433
CspAI	ACCGGT	1 cut(s)	338
CspI	CGGWCCG	1 cut(s)	480
CviAII	CATG	1 cut(s)	106
DdeI	CTNAG	4 cut(s)	14, 89, 278, 631
DpnI	GATC	4 cut(s)	27, 467, 476, 500
DpnII	GATC	4 cut(s)	25, 465, 474, 498
DrdI	GACNNNNNNGTC	1 cut(s)	121
DriI	GACNNNNNGTC	1 cut(s)	238
DseDI	GACNNNNNNGTC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	353
Eam1105I	GACNNNNNGTC	1 cut(s)	238
EciI	GGCGGA	1 cut(s)	544
Ecl136II	GAGCTC	1 cut(s)	674
Eco24I	GRGCYC	4 cut(s)	95, 320, 351, 676
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	2 cut(s)	480, 531
Eco53kI	GAGCTC	1 cut(s)	674
Eco57I	CTGAAG	1 cut(s)	437
Eco81I	CCTNAGG	1 cut(s)	631
Eco88I	CYCGRG	1 cut(s)	675
Eco91I	GGTNACC	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	674
EcoO65I	GGTNACC	1 cut(s)	293
EcoRII	CCWGG	4 cut(s)	119, 350, 468, 491
EcoT38I	GRGCYC	4 cut(s)	95, 320, 351, 676
Esp3I	CGTCTC	1 cut(s)	157
FaeI	CATG	1 cut(s)	109
FaiI	YATR	3 cut(s)	107, 684, 696
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	1 cut(s)	105
FauI	CCCGC	2 cut(s)	563, 591
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	5 cut(s)	99, 173, 263, 325, 334
FokI	GGATG	3 cut(s)	71, 121, 713
FriOI	GRGCYC	4 cut(s)	95, 320, 351, 676
Fsp4HI	GCNGC	5 cut(s)	99, 173, 263, 325, 334
FspBI	CTAG	1 cut(s)	248
GlaI	GCGC	2 cut(s)	76, 303
GluI	GCNGC	5 cut(s)	99, 173, 263, 325, 334
GsaI	CCCAGC	1 cut(s)	98
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	8 cut(s)	355, 380, 445, 491, 506, 560, 629, 643
HapII	CCGG	9 cut(s)	226, 339, 362, 446, 457, 478, 502, 561, 644
HgaI	GACGC	3 cut(s)	174, 228, 433
HhaI	GCGC	2 cut(s)	77, 304
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	2 cut(s)	75, 302
HinP1I	GCGC	2 cut(s)	75, 302
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	3 cut(s)	80, 368, 622
HpaII	CCGG	9 cut(s)	226, 339, 362, 446, 457, 478, 502, 561, 644
HphI	GGTGA	2 cut(s)	305, 397
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	5 cut(s)	25, 346, 373, 417, 453
Hpy188III	TCNNGA	3 cut(s)	13, 88, 272
Hpy8I	GTNNAC	1 cut(s)	61
Hpy99I	CGWCG	4 cut(s)	55, 244, 401, 427
HpyAV	CCTTC	2 cut(s)	412, 601
HpyCH4III	ACNGT	2 cut(s)	385, 520
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	2 cut(s)	262, 553
HpyF10VI	GCNNNNNNNGC	6 cut(s)	283, 324, 330, 333, 503, 608
HpyF3I	CTNAG	4 cut(s)	14, 89, 278, 631
HpySE526I	ACGT	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	2 cut(s)	75, 302
KroI	GCCGGC	1 cut(s)	560
KroNI	GCCGGC	1 cut(s)	562
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	4 cut(s)	25, 465, 474, 498
LmnI	GCTCC	2 cut(s)	274, 346
Lsp1109I	GCAGC	5 cut(s)	110, 184, 274, 311, 345
LweI	GCATC	2 cut(s)	143, 540
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	4 cut(s)	27, 467, 476, 500
MboI	GATC	4 cut(s)	25, 465, 474, 498
MhlI	GDGCHC	4 cut(s)	95, 320, 351, 676
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	351
MroNI	GCCGGC	1 cut(s)	560
MseI	TTAA	1 cut(s)	715
MspI	CCGG	9 cut(s)	226, 339, 362, 446, 457, 478, 502, 561, 644
MvaI	CCWGG	4 cut(s)	121, 352, 470, 493
MvnI	CGCG	1 cut(s)	304
MwoI	GCNNNNNNNGC	6 cut(s)	283, 324, 330, 333, 503, 608
NaeI	GCCGGC	1 cut(s)	562
NciI	CCSGG	6 cut(s)	226, 363, 447, 458, 503, 645
NdeII	GATC	4 cut(s)	25, 465, 474, 498
NgoMIV	GCCGGC	1 cut(s)	560
NheI	GCTAGC	1 cut(s)	247
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	348
NmeAIII	GCCGAG	2 cut(s)	181, 532
NmuCI	GTSAC	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	2 cut(s)	172, 236
PdiI	GCCGGC	1 cut(s)	562
PfeI	GAWTC	2 cut(s)	80, 622
PinAI	ACCGGT	1 cut(s)	338
PkrI	GCNGC	5 cut(s)	100, 174, 264, 326, 335
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp124BI	GAGCTC	1 cut(s)	676
Psp6I	CCWGG	4 cut(s)	119, 350, 468, 491
PspEI	GGTNACC	1 cut(s)	293
PspFI	CCCAGC	1 cut(s)	94
PspGI	CCWGG	4 cut(s)	119, 350, 468, 491
PspN4I	GGNNCC	1 cut(s)	348
PspPI	GGNCC	6 cut(s)	480, 504, 531, 558, 627, 641
Rsr2I	CGGWCCG	1 cut(s)	480
RsrII	CGGWCCG	1 cut(s)	480
SacI	GAGCTC	1 cut(s)	676
SaqAI	TTAA	1 cut(s)	715
SatI	GCNGC	5 cut(s)	99, 173, 263, 325, 334
Sau3AI	GATC	4 cut(s)	25, 465, 474, 498
Sau96I	GGNCC	6 cut(s)	480, 504, 531, 558, 627, 641
SchI	GAGTC	1 cut(s)	377
SduI	GDGCHC	4 cut(s)	95, 320, 351, 676
SfaNI	GCATC	2 cut(s)	143, 540
SinI	GGWCC	2 cut(s)	480, 531
SsiI	CCGC	7 cut(s)	202, 251, 327, 529, 564, 570, 598
SspI	AATATT	1 cut(s)	713
SspMI	CTAG	1 cut(s)	248
SstI	GAGCTC	1 cut(s)	676
TaaI	ACNGT	2 cut(s)	385, 520
TaiI	ACGT	1 cut(s)	270
TaqII	GACCGA	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	80, 622
Tru1I	TTAA	1 cut(s)	715
Tru9I	TTAA	1 cut(s)	715
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	5 cut(s)	98, 172, 262, 324, 333
Tsp45I	GTSAC	1 cut(s)	293
TspGWI	ACGGA	2 cut(s)	245, 472
VpaK11BI	GGWCC	2 cut(s)	480, 531
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.