AT5G07170

Cell cycle regulated microtubule associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006192
Physical Location & Seq
Forward (+)
2222763 .. 2225469
2707 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G07170.1

Sequence Viewer

Length: 1092 bp
ATGCTCGATTTCAACATGTTCTTCCCCAAGAAAATTGATCCGGAAACAATGGATATATTTGCAGAAGATTTCTCCCTTGAGAAATTCGACATCGATTTCGAATTCGACATCGATTTCGAATTCGACGCTCCTCGATTCTACGATTTCTCCAAACCTGAACTCGATTCAGAAACAGAGGAAACAGAGCTTTGGTTTCAATCAGCTGGAAACTATCCTCCTTCACCATTTAGCATACATTTGAGATACGAAGAAAAACATCTTGAGATCCCTAAACCCGTCTCAGATCAATACAATGGGTTTATATATAATAACCAAGCTCCTAAAGATGTTCCCAAGGCGACGCATAAGTCTAAAACCAAAACTTATTTACGAAAGAACTCAACTTTAACGAGACCCACTGCTTCTTTGTTGGCAAGACAGAATAAACCTCTCGATATTTACTCTGTTCGGCTTCTCACAAGATGTCAGCGGTCATTAGGAAAGTGTGATGACAAGTTCTCATCTCACTTATATTCAATGCCTCAAACCCAAGATAACAAAAGGCAAAAACTCGAAACCGGCTTCTTGCGCAAGGTTTCACGGCTGGACCAAACTCCTTTTTTACATAAAGTTCCAAAGAAGGGGTCCAAAGTCACTGTTCCAAGAGAGCCTAACCTCAAGACTGCCCAAAGAGCTGCAAGAAACCGGTTTAAGGCTAACTCAGCACCCGAGCAGATTGCAAAATTCATCTCTAATATGAATAAAACAGTTCAAGGAACTACTTCACCATCTTTGCCTAAGAAGAATACGCCTCACCACCCCCAAGATCTACAGGCATTTCATCTAAGGACATCTCTTAGAGCGAGGGAACGCTCTTCCAGTGCTAAAATTGCACCAACCGATGATTCTAAACACTCCTTAACGTCAAAGTCCGTTGGTTCCATGAAGGGTATGAAGGTCAAGGCGTCTCGCAGCTCAAATTCCAATTGTCAAGTTTATGGACCTAAGATTTGCCCTCTAGACTCAAAGGTGATGCAGACATCAAGCAAATGCGGTGAAGCAATCGATATCAAACATGAAAACAATCTTCTGAGGTTTATTGAAGGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2_importin

Protein Analysis

363

Amino Acids

41.55

Weight (kDa)

9.49

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2_importin PF12214 210 - 303 1.9e-12 Cell cycle regulated microtubule associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 346
Acc16I TGCGCA 1 cut(s) 569
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 2 cut(s) 469, 1032
AclWI GGATC 2 cut(s) 32, 259
AcsI RAATTY 6 cut(s) 83, 101, 119, 722, 958, 1086
AcyI GRCGYC 1 cut(s) 944
AfiI CCNNNNNNNGG 2 cut(s) 620, 691
AflIII ACRYGT 1 cut(s) 15
AgeI ACCGGT 1 cut(s) 684
AgsI TTSAA 5 cut(s) 13, 197, 516, 752, 1082
AjuI GAANNNNNNNTTGG 2 cut(s) 868, 900
AluBI AGCT 5 cut(s) 187, 203, 317, 674, 954
AluI AGCT 5 cut(s) 187, 203, 317, 674, 954
Alw26I GTCTC 3 cut(s) 283, 385, 951
AlwI GGATC 2 cut(s) 32, 259
Ama87I CYCGRG 1 cut(s) 707
Aor13HI TCCGGA 1 cut(s) 40
ApeKI GCWGC 2 cut(s) 674, 951
ApoI RAATTY 6 cut(s) 83, 101, 119, 722, 958, 1086
ArsI GACNNNNNNTTYG 8 cut(s) 80, 98, 112, 130, 608, 640, 972, 1004
AsiGI ACCGGT 1 cut(s) 684
Asp700I GAANNNNTTC 1 cut(s) 760
AspLEI GCGC 1 cut(s) 570
AspS9I GGNCC 3 cut(s) 586, 624, 980
AsuHPI GGTGA 5 cut(s) 213, 756, 785, 1021, 1046
AsuII TTCGAA 2 cut(s) 99, 117
AvaI CYCGRG 1 cut(s) 707
AvaII GGWCC 3 cut(s) 586, 624, 980
BbvI GCAGC 2 cut(s) 661, 963
BccI CCATC 1 cut(s) 775
BceAI ACGGC 1 cut(s) 596
BcgI CGANNNNNNTGC 2 cut(s) 698, 732
BcoDI GTCTC 3 cut(s) 283, 385, 951
BfaI CTAG 1 cut(s) 998
BfmI CTRYAG 1 cut(s) 809
BglII AGATCT 1 cut(s) 805
BisI GCNGC 2 cut(s) 675, 952
BlsI GCNGC 2 cut(s) 676, 953
Bme18I GGWCC 3 cut(s) 586, 624, 980
BmeT110I CYCGRG 1 cut(s) 707
BmgT120I GGNCC 3 cut(s) 586, 624, 980
BmiI GGNNCC 2 cut(s) 625, 919
BmsI GCATC 1 cut(s) 1002
Bpu14I TTCGAA 2 cut(s) 99, 117
BpuEI CTTGAG 3 cut(s) 98, 281, 641
Bsa29I ATCGAT 3 cut(s) 93, 111, 1044
BsaHI GRCGYC 1 cut(s) 944
BsaI GGTCTC 1 cut(s) 385
BsaJI CCNNGG 1 cut(s) 333
BsaWI WCCGGW 2 cut(s) 40, 684
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 2 cut(s) 620, 691
Bse118I RCCGGY 2 cut(s) 557, 684
Bse1I ACTGG 1 cut(s) 858
BseAI TCCGGA 1 cut(s) 40
BseCI ATCGAT 3 cut(s) 93, 111, 1044
BseDI CCNNGG 1 cut(s) 333
BseLI CCNNNNNNNGG 2 cut(s) 620, 691
BseMII CTCAG 3 cut(s) 294, 714, 1061
BseNI ACTGG 1 cut(s) 858
BseRI GAGGAG 1 cut(s) 120
BseXI GCAGC 2 cut(s) 661, 963
BshTI ACCGGT 1 cut(s) 684
BshVI ATCGAT 3 cut(s) 93, 111, 1044
BsiHKCI CYCGRG 1 cut(s) 707
BsiSI CCGG 3 cut(s) 41, 558, 685
BslI CCNNNNNNNGG 2 cut(s) 620, 691
BsmAI GTCTC 3 cut(s) 283, 385, 951
BsmBI CGTCTC 2 cut(s) 283, 951
Bso31I GGTCTC 1 cut(s) 385
BsoBI CYCGRG 1 cut(s) 707
Bsp119I TTCGAA 2 cut(s) 99, 117
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 4 cut(s) 37, 264, 283, 805
BspACI CCGC 2 cut(s) 469, 1032
BspCNI CTCAG 3 cut(s) 293, 713, 1062
BspDI ATCGAT 3 cut(s) 93, 111, 1044
BspEI TCCGGA 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 625, 919
BspPI GGATC 2 cut(s) 32, 259
BspQI GCTCTTC 1 cut(s) 859
BspT104I TTCGAA 2 cut(s) 99, 117
BspTNI GGTCTC 1 cut(s) 385
BsrFI RCCGGY 2 cut(s) 557, 684
BsrI ACTGG 1 cut(s) 858
BssAI RCCGGY 2 cut(s) 557, 684
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 4 cut(s) 37, 264, 283, 805
BssNI GRCGYC 1 cut(s) 944
BssT1I CCWWGG 1 cut(s) 333
Bst4CI ACNGT 2 cut(s) 637, 748
Bst6I CTCTTC 1 cut(s) 859
BstACI GRCGYC 1 cut(s) 944
BstBI TTCGAA 2 cut(s) 99, 117
BstDEI CTNAG 7 cut(s) 280, 700, 777, 824, 836, 984, 1070
BstHHI GCGC 1 cut(s) 570
BstKTI GATC 4 cut(s) 40, 267, 286, 808
BstMAI GTCTC 3 cut(s) 283, 385, 951
BstMBI GATC 4 cut(s) 37, 264, 283, 805
BstMWI GCNNNNNNNGC 4 cut(s) 567, 671, 701, 869
BstNSI RCATGY 1 cut(s) 19
BstSFI CTRYAG 1 cut(s) 809
BstV1I GCAGC 2 cut(s) 661, 963
BstX2I RGATCY 2 cut(s) 264, 805
BstYI RGATCY 2 cut(s) 264, 805
Bsu15I ATCGAT 3 cut(s) 93, 111, 1044
BsuTUI ATCGAT 3 cut(s) 93, 111, 1044
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 3 cut(s) 396, 633, 865
CfoI GCGC 1 cut(s) 570
Cfr10I RCCGGY 2 cut(s) 557, 684
Cfr13I GGNCC 3 cut(s) 586, 624, 980
ClaI ATCGAT 3 cut(s) 93, 111, 1044
CseI GACGC 3 cut(s) 134, 349, 933
CspAI ACCGGT 1 cut(s) 684
CviAII CATG 3 cut(s) 16, 922, 1055
DdeI CTNAG 7 cut(s) 280, 700, 777, 824, 836, 984, 1070
DpnI GATC 4 cut(s) 39, 266, 285, 807
DpnII GATC 4 cut(s) 37, 264, 283, 805
DrdI GACNNNNNNGTC 1 cut(s) 346
DseDI GACNNNNNNGTC 1 cut(s) 346
Eam1104I CTCTTC 1 cut(s) 859
EarI CTCTTC 1 cut(s) 859
Eco130I CCWWGG 1 cut(s) 333
Eco31I GGTCTC 1 cut(s) 385
Eco32I GATATC 1 cut(s) 1048
Eco47I GGWCC 3 cut(s) 586, 624, 980
Eco88I CYCGRG 1 cut(s) 707
EcoRI GAATTC 2 cut(s) 101, 119
EcoRV GATATC 1 cut(s) 1048
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
Esp3I CGTCTC 2 cut(s) 283, 951
FaeI CATG 3 cut(s) 19, 925, 1058
FatI CATG 3 cut(s) 15, 921, 1054
Fnu4HI GCNGC 2 cut(s) 675, 952
Fsp4HI GCNGC 2 cut(s) 675, 952
FspBI CTAG 1 cut(s) 998
FspI TGCGCA 1 cut(s) 569
GlaI GCGC 1 cut(s) 569
GluI GCNGC 2 cut(s) 675, 952
HapII CCGG 3 cut(s) 41, 558, 685
HgaI GACGC 3 cut(s) 134, 349, 933
HhaI GCGC 1 cut(s) 570
Hin1I GRCGYC 1 cut(s) 944
Hin1II CATG 3 cut(s) 19, 925, 1058
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HinfI GANTC 4 cut(s) 135, 164, 884, 1001
HpaII CCGG 3 cut(s) 41, 558, 685
HphI GGTGA 5 cut(s) 213, 756, 785, 1021, 1046
Hpy188I TCNGA 3 cut(s) 169, 283, 1071
Hpy188III TCNNGA 5 cut(s) 41, 260, 431, 658, 998
Hpy99I CGWCG 2 cut(s) 128, 343
HpyAV CCTTC 5 cut(s) 228, 613, 919, 928, 1076
HpyCH4III ACNGT 2 cut(s) 637, 748
HpyCH4IV ACGT 1 cut(s) 902
HpyCH4V TGCA 5 cut(s) 62, 677, 719, 872, 1015
HpyF10VI GCNNNNNNNGC 4 cut(s) 567, 671, 701, 869
HpyF3I CTNAG 7 cut(s) 280, 700, 777, 824, 836, 984, 1070
HpySE526I ACGT 1 cut(s) 902
Hsp92I GRCGYC 1 cut(s) 944
Hsp92II CATG 3 cut(s) 19, 925, 1058
HspAI GCGC 1 cut(s) 568
Kpn2I TCCGGA 1 cut(s) 40
Kzo9I GATC 4 cut(s) 37, 264, 283, 805
LguI GCTCTTC 1 cut(s) 859
LmnI GCTCC 2 cut(s) 133, 322
LpnPI CCDG 8 cut(s) 54, 168, 189, 569, 571, 698, 797, 871
Lsp1109I GCAGC 2 cut(s) 661, 963
LweI GCATC 1 cut(s) 1002
MaeI CTAG 1 cut(s) 998
MaeII ACGT 1 cut(s) 902
MaeIII GTNAC 1 cut(s) 631
MalI GATC 4 cut(s) 39, 266, 285, 807
MboI GATC 4 cut(s) 37, 264, 283, 805
MboII GAAGA 6 cut(s) 13, 77, 260, 793, 846, 1058
MfeI CAATTG 1 cut(s) 964
MflI RGATCY 2 cut(s) 264, 805
MluCI AATT 9 cut(s) 33, 83, 101, 119, 722, 867, 958, 964, 1086
MlyI GAGTC 1 cut(s) 995
MroI TCCGGA 1 cut(s) 40
MroXI GAANNNNTTC 1 cut(s) 760
MseI TTAA 3 cut(s) 386, 690, 899
MspA1I CMGCKG 2 cut(s) 203, 469
MspI CCGG 3 cut(s) 41, 558, 685
MunI CAATTG 1 cut(s) 964
MwoI GCNNNNNNNGC 4 cut(s) 567, 671, 701, 869
NdeII GATC 4 cut(s) 37, 264, 283, 805
NlaIII CATG 3 cut(s) 19, 925, 1058
NlaIV GGNNCC 2 cut(s) 625, 919
NmuCI GTSAC 1 cut(s) 631
NsbI TGCGCA 1 cut(s) 569
NspI RCATGY 1 cut(s) 19
NspV TTCGAA 2 cut(s) 99, 117
PciI ACATGT 1 cut(s) 15
PciSI GCTCTTC 1 cut(s) 859
PdmI GAANNNNTTC 1 cut(s) 760
PfeI GAWTC 3 cut(s) 135, 164, 884
PinAI ACCGGT 1 cut(s) 684
PkrI GCNGC 2 cut(s) 676, 953
PleI GAGTC 1 cut(s) 995
PpsI GAGTC 1 cut(s) 995
PscI ACATGT 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 625, 919
PspPI GGNCC 3 cut(s) 586, 624, 980
PsuI RGATCY 2 cut(s) 264, 805
PvuII CAGCTG 1 cut(s) 203
SapI GCTCTTC 1 cut(s) 859
SaqAI TTAA 3 cut(s) 386, 690, 899
SatI GCNGC 2 cut(s) 675, 952
Sau3AI GATC 4 cut(s) 37, 264, 283, 805
Sau96I GGNCC 3 cut(s) 586, 624, 980
SchI GAGTC 1 cut(s) 995
SfaNI GCATC 1 cut(s) 1002
SfcI CTRYAG 1 cut(s) 809
SfuI TTCGAA 2 cut(s) 99, 117
SinI GGWCC 3 cut(s) 586, 624, 980
SmlI CTYRAG 3 cut(s) 77, 260, 656
SmoI CTYRAG 3 cut(s) 77, 260, 656
Sse9I AATT 9 cut(s) 33, 83, 101, 119, 722, 867, 958, 964, 1086
SsiI CCGC 2 cut(s) 469, 1032
SspMI CTAG 1 cut(s) 998
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 637, 748
TaiI ACGT 1 cut(s) 905
TasI AATT 9 cut(s) 33, 83, 101, 119, 722, 867, 958, 964, 1086
TfiI GAWTC 3 cut(s) 135, 164, 884
Tru1I TTAA 3 cut(s) 386, 690, 899
Tru9I TTAA 3 cut(s) 386, 690, 899
TscAI CASTG 3 cut(s) 403, 640, 865
TseFI GTSAC 1 cut(s) 631
TseI GCWGC 2 cut(s) 674, 951
Tsp45I GTSAC 1 cut(s) 631
TspDTI ATGAA 6 cut(s) 715, 752, 809, 938, 947, 1071
TspGWI ACGGA 1 cut(s) 901
TspRI CASTG 3 cut(s) 403, 640, 865
VpaK11BI GGWCC 3 cut(s) 586, 624, 980
XapI RAATTY 6 cut(s) 83, 101, 119, 722, 958, 1086
XbaI TCTAGA 1 cut(s) 997
XceI RCATGY 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 760
XspI CTAG 1 cut(s) 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.