FvH4_7g28280

Cell cycle regulated microtubule associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006192
Physical Location & Seq
Forward (+)
20974764 .. 20978444
3681 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28280.t1

Sequence Viewer

Length: 1209 bp
ATGGACGATGAAGAAATGGTGGAGTTTGCTTTGGAGGCTTTGGAGGGTGAAGAGATTGACATGGATTATGAGTTCGATGCGCCTAAGTTCTTTGATTTTACGAGGCTTGAAACCGATTGGGAGGCTGAAGAAGCCGAAGATTGGTTTCGATGCGCCGGAAGTTATCCTTCTTCTCCTTTCATATTGAGATTGTTGAATTGGCACAAAGGCAATTCTCCAGAGGAAACAGCAACGACCTCTGTGGAAGTCGAAGATGTAGAATGCATTAGATATGATAGCAACGAGTCGAGTAGCATTGAAGCTGAGGGTTCTTCATTAGAAGATGATAGTATCAAAGGAGTAAATTGCTCTAACAAAATGGATCAAGATTCTCCAAAAGCTAAAACCAAGTCCTCAATCAAGTCACCAACCCTATCAAGGAGTTCAACTTTAATGAAACCCACAGCTAGCCAATTAGCCAAGCAGATCCAGCGTCGTCGTGAAGTTAGAGAACCTCACTCCAGTCGATTATCAAGGAGAGATGAGAAGAAGCTAGGGAAAGTTGCGGAGAGTTCACTAAGTTCTCCATTATTCGATAGTGTAGCAACTAAAAGACAGAAGTTGGAGGCTGGCTATTTGCGCAAGGTTTCTCATCTTAAGCATCAACCTCTTTGGTTACACAAATCACCAAATAATAGAACCAAAGTCACCATTCCTAGAGAACCAAACTTGGAAACAGCACAAAGGGCACAAAGACGTAGGTACAAGACTAATGGGAAAGATGGAGAACAACCAAAAATATTTAAGGAGCCTCCATGGACCCTCTCTAAGAAGAGCACGCCACAAGCAAAAGAGTTTCAAGTGTTTCATTTTAGGACATCACAAAGAGCTAAGCATAGCACAGTTGATAATGTGACAAATACACCAATTTCTAGTTGTTTATCACCAACTGAAGCTACAGAGATTAAAGGACCAAAATCTGCCTTTCACAAAAGTGATAAATGCAAAGTGCTCTCTCTTAAAAAGAAGACATTGTCAAGTAAAGAAGGTACTGGTGTTCTACCAAATATCAAACAGGAAGGCAGACAACCAAGTCCAAGGGAATTAAAGTTTACTACTGACAAGAGGTTTATTAACGAGCCACCAACAGATTTATTCAGCAAGCTCTCACTTGCACCTGAACCCCATCACAATTCAAAACCTGAGCTCAAAACTGCCTATGCCTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2_importin

Protein Analysis

403

Amino Acids

45.67

Weight (kDa)

8.78

Isoelectric Point (pI)

62.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2_importin PF12214 228 - 357 1.4e-11 Cell cycle regulated microtubule associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1071
Acc16I TGCGCA 1 cut(s) 620
AciI CCGC 1 cut(s) 545
AclWI GGATC 2 cut(s) 369, 460
AcuI CTGAAG 2 cut(s) 147, 951
AfaI GTAC 2 cut(s) 743, 1030
AfiI CCNNNNNNNGG 2 cut(s) 141, 417
AflII CTTAAG 1 cut(s) 635
AgsI TTSAA 6 cut(s) 110, 196, 299, 426, 839, 1176
AleI CACNNNNGTG 1 cut(s) 972
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 8 cut(s) 302, 380, 446, 532, 869, 935, 1144, 1186
AluI AGCT 8 cut(s) 302, 380, 446, 532, 869, 935, 1144, 1186
Alw21I GWGCWC 3 cut(s) 818, 993, 1188
AlwI GGATC 2 cut(s) 369, 460
AspLEI GCGC 3 cut(s) 82, 155, 621
AspS9I GGNCC 2 cut(s) 798, 950
AsuHPI GGTGA 5 cut(s) 59, 396, 657, 679, 915
AsuNHI GCTAGC 1 cut(s) 446
AvaII GGWCC 2 cut(s) 798, 950
BaeGI GKGCMC 1 cut(s) 730
BaeI ACNNNNGTAYC 2 cut(s) 1020, 1053
BanII GRGCYC 1 cut(s) 1188
BbsI GAAGAC 1 cut(s) 1013
Bbv12I GWGCWC 3 cut(s) 818, 993, 1188
BbvCI CCTCAGC 1 cut(s) 303
BccI CCATC 2 cut(s) 755, 1173
BfaI CTAG 5 cut(s) 447, 533, 696, 912, 1207
BfmI CTRYAG 1 cut(s) 936
BfrI CTTAAG 1 cut(s) 635
BlpI GCTNAGC 1 cut(s) 870
Bme18I GGWCC 2 cut(s) 798, 950
BmgT120I GGNCC 2 cut(s) 798, 950
BmiI GGNNCC 2 cut(s) 789, 800
BmsI GCATC 3 cut(s) 67, 140, 649
BmtI GCTAGC 1 cut(s) 450
BpiI GAAGAC 1 cut(s) 1013
BpmI CTGGAG 2 cut(s) 201, 484
Bpu10I CCTNAGC 2 cut(s) 303, 1182
Bpu1102I GCTNAGC 1 cut(s) 870
BsaJI CCNNGG 2 cut(s) 794, 1076
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 417
Bse1I ACTGG 2 cut(s) 501, 1036
BseDI CCNNGG 2 cut(s) 794, 1076
BseLI CCNNNNNNNGG 2 cut(s) 141, 417
BseMII CTCAG 2 cut(s) 294, 1173
BseNI ACTGG 2 cut(s) 501, 1036
BseSI GKGCMC 1 cut(s) 730
BsiHKAI GWGCWC 3 cut(s) 818, 993, 1188
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 2 cut(s) 141, 417
BsmI GAATGC 1 cut(s) 266
Bsp1286I GDGCHC 4 cut(s) 730, 818, 993, 1188
Bsp143I GATC 2 cut(s) 361, 465
Bsp1720I GCTNAGC 1 cut(s) 870
Bsp19I CCATGG 1 cut(s) 794
BspACI CCGC 1 cut(s) 545
BspCNI CTCAG 2 cut(s) 295, 1174
BspLI GGNNCC 2 cut(s) 789, 800
BspOI GCTAGC 1 cut(s) 450
BspPI GGATC 2 cut(s) 369, 460
BspQI GCTCTTC 1 cut(s) 806
BspTI CTTAAG 1 cut(s) 635
BsrI ACTGG 2 cut(s) 501, 1036
BssECI CCNNGG 2 cut(s) 794, 1076
BssMI GATC 2 cut(s) 361, 465
BssT1I CCWWGG 2 cut(s) 794, 1076
Bst4CI ACNGT 1 cut(s) 883
Bst6I CTCTTC 2 cut(s) 45, 806
BstAFI CTTAAG 1 cut(s) 635
BstC8I GCNNGC 5 cut(s) 448, 610, 818, 1142, 1204
BstDEI CTNAG 6 cut(s) 84, 303, 557, 807, 870, 1182
BstDSI CCRYGG 1 cut(s) 794
BstHHI GCGC 3 cut(s) 82, 155, 621
BstKTI GATC 2 cut(s) 364, 468
BstMBI GATC 2 cut(s) 361, 465
BstMWI GCNNNNNNNGC 5 cut(s) 35, 131, 469, 618, 725
BstSFI CTRYAG 1 cut(s) 936
BstSLI GKGCMC 1 cut(s) 730
BstV2I GAAGAC 1 cut(s) 1013
BstX2I RGATCY 1 cut(s) 465
BstYI RGATCY 1 cut(s) 465
BtgI CCRYGG 1 cut(s) 794
Cac8I GCNNGC 5 cut(s) 448, 610, 818, 1142, 1204
CfoI GCGC 3 cut(s) 82, 155, 621
Cfr13I GGNCC 2 cut(s) 798, 950
CseI GACGC 1 cut(s) 461
Csp6I GTAC 2 cut(s) 742, 1029
CviAII CATG 2 cut(s) 61, 795
CviQI GTAC 2 cut(s) 742, 1029
DdeI CTNAG 6 cut(s) 84, 303, 557, 807, 870, 1182
DpnI GATC 2 cut(s) 363, 467
DpnII GATC 2 cut(s) 361, 465
DrdI GACNNNNNNGTC 1 cut(s) 1071
DseDI GACNNNNNNGTC 1 cut(s) 1071
Eam1104I CTCTTC 2 cut(s) 45, 806
EarI CTCTTC 2 cut(s) 45, 806
Ecl136II GAGCTC 1 cut(s) 1186
Eco130I CCWWGG 2 cut(s) 794, 1076
Eco24I GRGCYC 1 cut(s) 1188
Eco47I GGWCC 2 cut(s) 798, 950
Eco53kI GAGCTC 1 cut(s) 1186
Eco57I CTGAAG 2 cut(s) 147, 951
EcoICRI GAGCTC 1 cut(s) 1186
EcoT14I CCWWGG 2 cut(s) 794, 1076
EcoT22I ATGCAT 1 cut(s) 266
EcoT38I GRGCYC 1 cut(s) 1188
ErhI CCWWGG 2 cut(s) 794, 1076
FaeI CATG 2 cut(s) 64, 798
FaiI YATR 7 cut(s) 62, 69, 182, 273, 796, 876, 1200
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FatI CATG 2 cut(s) 60, 794
FriOI GRGCYC 1 cut(s) 1188
FspBI CTAG 5 cut(s) 447, 533, 696, 912, 1207
FspI TGCGCA 1 cut(s) 620
GlaI GCGC 3 cut(s) 81, 154, 620
GsuI CTGGAG 2 cut(s) 201, 484
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 461
HhaI GCGC 3 cut(s) 82, 155, 621
Hin1II CATG 2 cut(s) 64, 798
Hin6I GCGC 3 cut(s) 80, 153, 619
HinP1I GCGC 3 cut(s) 80, 153, 619
HinfI GANTC 2 cut(s) 284, 368
HpaII CCGG 1 cut(s) 156
HphI GGTGA 5 cut(s) 59, 396, 657, 679, 915
Hpy166II GTNNAC 2 cut(s) 554, 1092
Hpy188III TCNNGA 3 cut(s) 218, 365, 479
Hpy8I GTNNAC 2 cut(s) 554, 1092
Hpy99I CGWCG 2 cut(s) 477, 480
HpyAV CCTTC 3 cut(s) 177, 1019, 1052
HpyCH4III ACNGT 1 cut(s) 883
HpyCH4IV ACGT 1 cut(s) 736
HpyCH4V TGCA 3 cut(s) 264, 984, 1154
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 131, 469, 618, 725
HpyF3I CTNAG 6 cut(s) 84, 303, 557, 807, 870, 1182
HpySE526I ACGT 1 cut(s) 736
Hsp92II CATG 2 cut(s) 64, 798
HspAI GCGC 3 cut(s) 80, 153, 619
Kzo9I GATC 2 cut(s) 361, 465
LguI GCTCTTC 1 cut(s) 806
LmnI GCTCC 1 cut(s) 787
LpnPI CCDG 9 cut(s) 169, 231, 482, 514, 594, 1017, 1040, 1170, 1194
LweI GCATC 3 cut(s) 67, 140, 649
MaeI CTAG 5 cut(s) 447, 533, 696, 912, 1207
MaeII ACGT 1 cut(s) 736
MaeIII GTNAC 4 cut(s) 402, 654, 685, 892
MalI GATC 2 cut(s) 363, 467
MboI GATC 2 cut(s) 361, 465
MflI RGATCY 1 cut(s) 465
MhlI GDGCHC 4 cut(s) 730, 818, 993, 1188
MluCI AATT 7 cut(s) 196, 211, 343, 452, 906, 1082, 1171
MlyI GAGTC 1 cut(s) 293
MmeI TCCRAC 1 cut(s) 582
Mph1103I ATGCAT 1 cut(s) 266
MseI TTAA 7 cut(s) 431, 636, 783, 945, 999, 1085, 1113
MslI CAYNNNNRTG 1 cut(s) 972
MspCI CTTAAG 1 cut(s) 635
MspI CCGG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 266
MwoI GCNNNNNNNGC 5 cut(s) 35, 131, 469, 618, 725
NcoI CCATGG 1 cut(s) 794
NdeII GATC 2 cut(s) 361, 465
NheI GCTAGC 1 cut(s) 446
NlaIII CATG 2 cut(s) 64, 798
NlaIV GGNNCC 2 cut(s) 789, 800
NmuCI GTSAC 3 cut(s) 402, 685, 892
NsbI TGCGCA 1 cut(s) 620
NsiI ATGCAT 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 972
PciSI GCTCTTC 1 cut(s) 806
PctI GAATGC 1 cut(s) 266
PfeI GAWTC 1 cut(s) 368
PflFI GACNNNGTC 1 cut(s) 1012
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
Psp124BI GAGCTC 1 cut(s) 1188
PspN4I GGNNCC 2 cut(s) 789, 800
PspPI GGNCC 2 cut(s) 798, 950
PsuI RGATCY 1 cut(s) 465
PsyI GACNNNGTC 1 cut(s) 1012
RsaI GTAC 2 cut(s) 743, 1030
RsaNI GTAC 2 cut(s) 742, 1029
RseI CAYNNNNRTG 1 cut(s) 972
SacI GAGCTC 1 cut(s) 1188
SapI GCTCTTC 1 cut(s) 806
SaqAI TTAA 7 cut(s) 431, 636, 783, 945, 999, 1085, 1113
Sau3AI GATC 2 cut(s) 361, 465
Sau96I GGNCC 2 cut(s) 798, 950
SchI GAGTC 1 cut(s) 293
SduI GDGCHC 4 cut(s) 730, 818, 993, 1188
SfaNI GCATC 3 cut(s) 67, 140, 649
SfcI CTRYAG 1 cut(s) 936
SinI GGWCC 2 cut(s) 798, 950
SmiMI CAYNNNNRTG 1 cut(s) 972
SmlI CTYRAG 1 cut(s) 635
SmoI CTYRAG 1 cut(s) 635
Sse9I AATT 7 cut(s) 196, 211, 343, 452, 906, 1082, 1171
SsiI CCGC 1 cut(s) 545
SspI AATATT 1 cut(s) 780
SspMI CTAG 5 cut(s) 447, 533, 696, 912, 1207
SstI GAGCTC 1 cut(s) 1188
StyI CCWWGG 2 cut(s) 794, 1076
TaaI ACNGT 1 cut(s) 883
TaiI ACGT 1 cut(s) 739
TaqI TCGA 6 cut(s) 75, 148, 249, 287, 505, 573
TasI AATT 7 cut(s) 196, 211, 343, 452, 906, 1082, 1171
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 7 cut(s) 431, 636, 783, 945, 999, 1085, 1113
Tru9I TTAA 7 cut(s) 431, 636, 783, 945, 999, 1085, 1113
TseFI GTSAC 3 cut(s) 402, 685, 892
Tsp45I GTSAC 3 cut(s) 402, 685, 892
TspDTI ATGAA 5 cut(s) 24, 169, 303, 449, 836
Tth111I GACNNNGTC 1 cut(s) 1012
Vha464I CTTAAG 1 cut(s) 635
VpaK11BI GGWCC 2 cut(s) 798, 950
XspI CTAG 5 cut(s) 447, 533, 696, 912, 1207
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.