RLG00000026674

Cell cycle regulated microtubule associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006192
Physical Location & Seq
Reverse (-)
4808092 .. 4811191
3100 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026674

Sequence Viewer

Length: 1164 bp
ATGGACGACGAAGAAATGGTGGAGTTTGTTAAGGAGGCTTTCGAGGGTGAAGAAATTGACATGGATTATGAGTTCGACGCGCCTAGGTTCTATGATTTTACAACGCTTGAAACCGATTGGGAGGCTGAAGTGGCTGAAGATTGGTTCAGATACGCCGGAAGTTATCCTTCGTCTCCTTTTATAGTGAGATTGTTGAATTGGCACAAAGGCAATTCTCTTGAGGAAACAGCAAACACCTCTGTGGAATTCAAAGATGTCGAATGCATTAAATGTGCTAGCATCGAGTCGAAGAATAACATGGAAGCTGAGGTTTCTTCAATAGAAGATGATAGTAACAGAGGAGTAAAATGCTCTAATAAAATGGATCAAGATACTCCAAAAGCTAAAACCAAGTCCTCGGTCAAGTCACCATCCATATCAAGGAGTTCAACTTTGATGAAACCCACAGCGAGTCAATTAGCCAAGCAAAAACAGCGTCGTCTTGAAGTTCGACAATCTCACTCCAATCGATTATCGAGGAGGCTTGAGAAGAAGCTAGGGAAAGTCACGGAGAATTCACCGAGTTCTCCATTATGCGATAGTGTAGCAACTAAAAGACAGAAGTTGGAGGCTGGCTATGTGCGGAAGGTTTCTCAACTTAAGCATCAACCTCTTTGGTTTCACAAGTCGCCAAAAAAGGTTGGAACTGCTGTAACGTCACCAAATGGTAGACCTAAAGTCACCATTCCTAGAGAACCAAACTTGGAAACAGCACAAAGGGCACAAAGACGTAGGTATAAGACTATTGCGAAAGATGGAGAACAAGCAAAAATTATCAAGGAGCCTCCATGGACCCTGCCTAAGAAGAGCGCACCACAAGCAAAAGAATTTCAAGTGTTTTATTTCAGGACATCACAAAGAGCTAAGCAAAGCACAGTTGATAATGTGACAAACACACCGATTTCTAGTTGTTTATCACCGACTGAAGCCACAGAGATTAAAGGACCAAACTCTGCCTCTGCCAAAAGTGATAAATGCAAAGTACTCTCTCTTAAAAAGAAGGAATTAAAGTTGGACAAGAGGTTTATGAAGGAGCCACCAACAGATTTATTCAGCAAGCTCTCACTTGCACCTGAAGCCCATCATAATGCAAATCCTGAGCTTAAAACTGCCTATGCCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2_importin

Protein Analysis

388

Amino Acids

43.86

Weight (kDa)

9.22

Isoelectric Point (pI)

56.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2_importin PF12214 239 - 325 2.8e-08 Cell cycle regulated microtubule associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 709
AccII CGCG 1 cut(s) 80
AciI CCGC 1 cut(s) 622
AclWI GGATC 1 cut(s) 372
AcsI RAATTY 3 cut(s) 245, 553, 866
AcuI CTGAAG 4 cut(s) 147, 156, 984, 1134
AfaI GTAC 1 cut(s) 1023
AfiI CCNNNNNNNGG 1 cut(s) 420
AflII CTTAAG 1 cut(s) 638
AgsI TTSAA 7 cut(s) 110, 196, 250, 318, 429, 485, 872
AhdI GACNNNNNGTC 1 cut(s) 716
AleI CACNNNNGTG 1 cut(s) 239
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 6 cut(s) 305, 383, 535, 902, 1099, 1141
AluI AGCT 6 cut(s) 305, 383, 535, 902, 1099, 1141
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 1 cut(s) 372
ApoI RAATTY 3 cut(s) 245, 553, 866
ArsI GACNNNNNNTTYG 2 cut(s) 460, 492
AspA2I CCTAGG 1 cut(s) 83
AspLEI GCGC 2 cut(s) 82, 851
AspS9I GGNCC 2 cut(s) 831, 983
AsuHPI GGTGA 6 cut(s) 59, 399, 549, 690, 712, 948
AsuNHI GCTAGC 1 cut(s) 275
AvaII GGWCC 2 cut(s) 831, 983
AvrII CCTAGG 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 763
BbvCI CCTCAGC 1 cut(s) 306
BccI CCATC 3 cut(s) 418, 788, 1128
BcoDI GTCTC 1 cut(s) 177
BfaI CTAG 5 cut(s) 84, 276, 536, 729, 945
BfrI CTTAAG 1 cut(s) 638
BlnI CCTAGG 1 cut(s) 83
BlpI GCTNAGC 1 cut(s) 903
BmcAI AGTACT 1 cut(s) 1023
Bme18I GGWCC 2 cut(s) 831, 983
BmeRI GACNNNNNGTC 1 cut(s) 716
BmgT120I GGNCC 2 cut(s) 831, 983
BmiI GGNNCC 3 cut(s) 822, 833, 1074
BmsI GCATC 2 cut(s) 288, 652
BmtI GCTAGC 1 cut(s) 279
Bpu10I CCTNAGC 2 cut(s) 306, 1137
Bpu1102I GCTNAGC 1 cut(s) 903
BpuEI CTTGAG 2 cut(s) 239, 545
Bsa29I ATCGAT 1 cut(s) 508
BsaJI CCNNGG 3 cut(s) 83, 396, 827
Bsc4I CCNNNNNNNGG 1 cut(s) 420
BseCI ATCGAT 1 cut(s) 508
BseDI CCNNGG 3 cut(s) 83, 396, 827
BseGI GGATG 1 cut(s) 410
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMII CTCAG 2 cut(s) 297, 1128
BseRI GAGGAG 2 cut(s) 354, 532
BseSI GKGCMC 1 cut(s) 763
Bsh1236I CGCG 1 cut(s) 80
BshVI ATCGAT 1 cut(s) 508
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 420
BsmAI GTCTC 1 cut(s) 177
BsmBI CGTCTC 1 cut(s) 177
BsmI GAATGC 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 763
Bsp143I GATC 1 cut(s) 364
Bsp1720I GCTNAGC 1 cut(s) 903
Bsp19I CCATGG 1 cut(s) 827
BspACI CCGC 1 cut(s) 622
BspCNI CTCAG 2 cut(s) 298, 1129
BspDI ATCGAT 1 cut(s) 508
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 3 cut(s) 822, 833, 1074
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 1 cut(s) 372
BspQI GCTCTTC 1 cut(s) 839
BspTI CTTAAG 1 cut(s) 638
BssECI CCNNGG 3 cut(s) 83, 396, 827
BssMI GATC 1 cut(s) 364
BssT1I CCWWGG 2 cut(s) 83, 827
Bst4CI ACNGT 1 cut(s) 916
Bst6I CTCTTC 1 cut(s) 839
BstAFI CTTAAG 1 cut(s) 638
BstC8I GCNNGC 4 cut(s) 277, 613, 1097, 1159
BstDEI CTNAG 4 cut(s) 306, 840, 903, 1137
BstDSI CCRYGG 1 cut(s) 827
BstF5I GGATG 1 cut(s) 410
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 2 cut(s) 82, 851
BstKTI GATC 1 cut(s) 367
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 1 cut(s) 364
BstMWI GCNNNNNNNGC 5 cut(s) 131, 472, 758, 857, 1115
BstSLI GKGCMC 1 cut(s) 763
BstUI CGCG 1 cut(s) 80
Bsu15I ATCGAT 1 cut(s) 508
BsuTUI ATCGAT 1 cut(s) 508
BtgI CCRYGG 1 cut(s) 827
BtsCI GGATG 1 cut(s) 410
Cac8I GCNNGC 4 cut(s) 277, 613, 1097, 1159
CfoI GCGC 2 cut(s) 82, 851
Cfr13I GGNCC 2 cut(s) 831, 983
ClaI ATCGAT 1 cut(s) 508
CseI GACGC 2 cut(s) 86, 464
Csp6I GTAC 1 cut(s) 1022
CviAII CATG 3 cut(s) 61, 298, 828
CviQI GTAC 1 cut(s) 1022
DdeI CTNAG 4 cut(s) 306, 840, 903, 1137
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
DriI GACNNNNNGTC 1 cut(s) 716
Eam1104I CTCTTC 1 cut(s) 839
Eam1105I GACNNNNNGTC 1 cut(s) 716
EarI CTCTTC 1 cut(s) 839
Eco130I CCWWGG 2 cut(s) 83, 827
Eco47I GGWCC 2 cut(s) 831, 983
Eco57I CTGAAG 4 cut(s) 147, 156, 984, 1134
EcoRI GAATTC 2 cut(s) 245, 553
EcoT14I CCWWGG 2 cut(s) 83, 827
EcoT22I ATGCAT 1 cut(s) 266
ErhI CCWWGG 2 cut(s) 83, 827
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 3 cut(s) 64, 301, 831
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FatI CATG 3 cut(s) 60, 297, 827
FblI GTMKAC 1 cut(s) 709
FokI GGATG 1 cut(s) 397
FspBI CTAG 5 cut(s) 84, 276, 536, 729, 945
GlaI GCGC 2 cut(s) 81, 850
HapII CCGG 1 cut(s) 156
HgaI GACGC 2 cut(s) 86, 464
HhaI GCGC 2 cut(s) 82, 851
Hin1II CATG 3 cut(s) 64, 301, 831
Hin6I GCGC 2 cut(s) 80, 849
HinP1I GCGC 2 cut(s) 80, 849
HinfI GANTC 2 cut(s) 284, 451
HpaII CCGG 1 cut(s) 156
HphI GGTGA 6 cut(s) 59, 399, 549, 690, 712, 948
Hpy166II GTNNAC 1 cut(s) 710
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 5 cut(s) 218, 368, 482, 886, 1136
Hpy8I GTNNAC 1 cut(s) 710
Hpy99I CGWCG 3 cut(s) 11, 80, 480
HpyAV CCTTC 4 cut(s) 177, 619, 1033, 1063
HpyCH4III ACNGT 1 cut(s) 916
HpyCH4IV ACGT 2 cut(s) 695, 769
HpyCH4V TGCA 4 cut(s) 264, 1017, 1109, 1130
HpyF10VI GCNNNNNNNGC 5 cut(s) 131, 472, 758, 857, 1115
HpyF3I CTNAG 4 cut(s) 306, 840, 903, 1137
HpySE526I ACGT 2 cut(s) 695, 769
Hsp92II CATG 3 cut(s) 64, 301, 831
HspAI GCGC 2 cut(s) 80, 849
Kzo9I GATC 1 cut(s) 364
LguI GCTCTTC 1 cut(s) 839
LmnI GCTCC 2 cut(s) 820, 1072
LpnPI CCDG 6 cut(s) 169, 597, 848, 871, 1125, 1149
LweI GCATC 2 cut(s) 288, 652
MaeI CTAG 5 cut(s) 84, 276, 536, 729, 945
MaeII ACGT 2 cut(s) 695, 769
MaeIII GTNAC 7 cut(s) 332, 405, 544, 691, 696, 718, 925
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 8 cut(s) 23, 62, 149, 301, 306, 335, 541, 856
MhlI GDGCHC 1 cut(s) 763
MluCI AATT 9 cut(s) 54, 196, 211, 245, 455, 553, 810, 866, 1043
MlyI GAGTC 2 cut(s) 293, 460
MmeI TCCRAC 3 cut(s) 585, 661, 1032
Mph1103I ATGCAT 1 cut(s) 266
MseI TTAA 7 cut(s) 30, 267, 639, 978, 1032, 1046, 1143
MslI CAYNNNNRTG 2 cut(s) 239, 1125
MspCI CTTAAG 1 cut(s) 638
MspI CCGG 1 cut(s) 156
Mva1269I GAATGC 1 cut(s) 266
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 5 cut(s) 131, 472, 758, 857, 1115
NcoI CCATGG 1 cut(s) 827
NdeII GATC 1 cut(s) 364
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 3 cut(s) 64, 301, 831
NlaIV GGNNCC 3 cut(s) 822, 833, 1074
NmuCI GTSAC 5 cut(s) 405, 544, 696, 718, 925
NsiI ATGCAT 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 239
PciSI GCTCTTC 1 cut(s) 839
PctI GAATGC 1 cut(s) 266
PleI GAGTC 2 cut(s) 292, 459
PpsI GAGTC 2 cut(s) 292, 459
PspN4I GGNNCC 3 cut(s) 822, 833, 1074
PspPI GGNCC 2 cut(s) 831, 983
RsaI GTAC 1 cut(s) 1023
RsaNI GTAC 1 cut(s) 1022
RseI CAYNNNNRTG 2 cut(s) 239, 1125
SapI GCTCTTC 1 cut(s) 839
SaqAI TTAA 7 cut(s) 30, 267, 639, 978, 1032, 1046, 1143
Sau3AI GATC 1 cut(s) 364
Sau96I GGNCC 2 cut(s) 831, 983
ScaI AGTACT 1 cut(s) 1023
SchI GAGTC 2 cut(s) 293, 460
SduI GDGCHC 1 cut(s) 763
SfaNI GCATC 2 cut(s) 288, 652
SinI GGWCC 2 cut(s) 831, 983
SmiMI CAYNNNNRTG 2 cut(s) 239, 1125
SmlI CTYRAG 3 cut(s) 218, 524, 638
SmoI CTYRAG 3 cut(s) 218, 524, 638
Sse9I AATT 9 cut(s) 54, 196, 211, 245, 455, 553, 810, 866, 1043
SsiI CCGC 1 cut(s) 622
SspMI CTAG 5 cut(s) 84, 276, 536, 729, 945
StyI CCWWGG 2 cut(s) 83, 827
TaaI ACNGT 1 cut(s) 916
TaiI ACGT 2 cut(s) 698, 772
TaqI TCGA 8 cut(s) 42, 75, 258, 282, 287, 490, 508, 515
TaqII GACCGA 1 cut(s) 388
TasI AATT 9 cut(s) 54, 196, 211, 245, 455, 553, 810, 866, 1043
TatI WGTACW 1 cut(s) 1021
Tru1I TTAA 7 cut(s) 30, 267, 639, 978, 1032, 1046, 1143
Tru9I TTAA 7 cut(s) 30, 267, 639, 978, 1032, 1046, 1143
TseFI GTSAC 5 cut(s) 405, 544, 696, 718, 925
Tsp45I GTSAC 5 cut(s) 405, 544, 696, 718, 925
TspDTI ATGAA 2 cut(s) 452, 1082
TspGWI ACGGA 1 cut(s) 563
Vha464I CTTAAG 1 cut(s) 638
VpaK11BI GGWCC 2 cut(s) 831, 983
XapI RAATTY 3 cut(s) 245, 553, 866
XmaJI CCTAGG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 709
XspI CTAG 5 cut(s) 84, 276, 536, 729, 945
ZrmI AGTACT 1 cut(s) 1023
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.