pycom07g23180

Cell cycle regulated microtubule associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0006192
Physical Location & Seq
Forward (+)
24209886 .. 24210215
330 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g23180.1

Sequence Viewer

Length: 330 bp
ATGGACGAAGAAATGGTGAAGTTCGTTAGGGAGGCTTTCAAGGGGGGAGAAATTGACATGGACTATGAATTCGATGCGCCCAAGTTCTACGATTTCACTCGGCCGGAGACTGGTCGGGAGGCCGAGGAGGCGGAGGAATGGTTCCTGCCAGCAGGAGGTTATCAGCCCTCGCGTAAGCGTTTTCAGAAACATTGGTTTACTGTTCTCCTAGTCATGTCCCACAACAACGAATTTTTTGATCATTTTCTATGCTTACCACATCAATTGATGATCGATCAAAAAAATCTGCTAATTCATTTCAATATATGTATGCTTAATTCATGCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2_importin

Protein Analysis

110

Amino Acids

13.09

Weight (kDa)

4.99

Isoelectric Point (pI)

58.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 172
AciI CCGC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 101
AcsI RAATTY 2 cut(s) 68, 230
AfiI CCNNNNNNNGG 2 cut(s) 110, 155
AgsI TTSAA 2 cut(s) 40, 301
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
Alw26I GTCTC 1 cut(s) 101
AoxI GGCC 2 cut(s) 101, 120
ApoI RAATTY 2 cut(s) 68, 230
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AspLEI GCGC 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 28
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 209
BglI GCCNNNNNGGC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 143
BmsI GCATC 1 cut(s) 64
Bsa29I ATCGAT 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 123
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 155
Bse1I ACTGG 1 cut(s) 115
BseCI ATCGAT 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 110, 155
BseNI ACTGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 140
BseX3I CGGCCG 1 cut(s) 101
Bsh1236I CGCG 1 cut(s) 172
Bsh1285I CGRYCG 1 cut(s) 104
BshFI GGCC 2 cut(s) 103, 122
BshVI ATCGAT 1 cut(s) 273
BsiEI CGRYCG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 2 cut(s) 110, 155
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 202
BsnI GGCC 2 cut(s) 103, 122
Bsp143I GATC 3 cut(s) 238, 270, 274
BspACI CCGC 1 cut(s) 131
BspANI GGCC 2 cut(s) 103, 122
BspDI ATCGAT 1 cut(s) 273
BspFNI CGCG 1 cut(s) 172
BspLI GGNNCC 1 cut(s) 143
BsrI ACTGG 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 3 cut(s) 238, 270, 274
Bst4CI ACNGT 1 cut(s) 202
BstC8I GCNNGC 1 cut(s) 150
BstFNI CGCG 1 cut(s) 172
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 3 cut(s) 241, 273, 277
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 3 cut(s) 238, 270, 274
BstMCI CGRYCG 1 cut(s) 104
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstUI CGCG 1 cut(s) 172
BstZI CGGCCG 1 cut(s) 101
Bsu15I ATCGAT 1 cut(s) 273
BsuRI GGCC 2 cut(s) 103, 122
BsuTUI ATCGAT 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 150
CfoI GCGC 1 cut(s) 79
ClaI ATCGAT 1 cut(s) 273
CspCI CAANNNNNGTGG 2 cut(s) 246, 281
CviAII CATG 3 cut(s) 58, 214, 321
CviJI RGCY 4 cut(s) 35, 103, 122, 166
CviKI_1 RGCY 4 cut(s) 35, 103, 122, 166
DpnI GATC 3 cut(s) 240, 272, 276
DpnII GATC 3 cut(s) 238, 270, 274
EaeI YGGCCR 1 cut(s) 101
EagI CGGCCG 1 cut(s) 101
EciI GGCGGA 1 cut(s) 146
EclXI CGGCCG 1 cut(s) 101
Eco52I CGGCCG 1 cut(s) 101
EcoRI GAATTC 1 cut(s) 68
EcoT22I ATGCAT 1 cut(s) 326
FaeI CATG 3 cut(s) 61, 217, 324
FaiI YATR 8 cut(s) 59, 66, 215, 250, 305, 307, 311, 322
FaqI GGGAC 1 cut(s) 202
FatI CATG 3 cut(s) 57, 213, 320
FbaI TGATCA 1 cut(s) 238
FspBI CTAG 1 cut(s) 209
GlaI GCGC 1 cut(s) 78
HaeIII GGCC 2 cut(s) 103, 122
HapII CCGG 1 cut(s) 104
HhaI GCGC 1 cut(s) 79
Hin1II CATG 3 cut(s) 61, 217, 324
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 2 cut(s) 186, 329
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
Hsp92II CATG 3 cut(s) 61, 217, 324
HspAI GCGC 1 cut(s) 77
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 3 cut(s) 238, 270, 274
LpnPI CCDG 5 cut(s) 96, 117, 138, 158, 162
LweI GCATC 1 cut(s) 64
MaeI CTAG 1 cut(s) 209
MalI GATC 3 cut(s) 240, 272, 276
MboI GATC 3 cut(s) 238, 270, 274
MboII GAAGA 1 cut(s) 20
MfeI CAATTG 1 cut(s) 263
MluCI AATT 6 cut(s) 51, 68, 230, 263, 291, 316
MnlI CCTC 7 cut(s) 25, 112, 118, 121, 127, 149, 178
Mph1103I ATGCAT 1 cut(s) 326
MseI TTAA 1 cut(s) 315
MspI CCGG 1 cut(s) 104
MunI CAATTG 1 cut(s) 263
MvnI CGCG 1 cut(s) 172
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 3 cut(s) 238, 270, 274
NlaIII CATG 3 cut(s) 61, 217, 324
NlaIV GGNNCC 1 cut(s) 143
NmeAIII GCCGAG 2 cut(s) 79, 148
NsiI ATGCAT 1 cut(s) 326
PspN4I GGNNCC 1 cut(s) 143
SaqAI TTAA 1 cut(s) 315
Sau3AI GATC 3 cut(s) 238, 270, 274
SetI ASST 1 cut(s) 160
SfaNI GCATC 1 cut(s) 64
Sse9I AATT 6 cut(s) 51, 68, 230, 263, 291, 316
SsiI CCGC 1 cut(s) 131
SspMI CTAG 1 cut(s) 209
TaaI ACNGT 1 cut(s) 202
TaqI TCGA 2 cut(s) 72, 273
TasI AATT 6 cut(s) 51, 68, 230, 263, 291, 316
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TspDTI ATGAA 3 cut(s) 81, 284, 309
XapI RAATTY 2 cut(s) 68, 230
XspI CTAG 1 cut(s) 209
Zsp2I ATGCAT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.