Rroxscaffold_4G00282900

Cell cycle regulated microtubule associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0006192
Physical Location & Seq
Reverse (-)
5000360 .. 5003419
3060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00282900.1

Sequence Viewer

Length: 1230 bp
ATGGACGACCAGGAAATGGTGGAGTTTGTTAAGGAGGCTTTCGAGGGTGAAGAGATTGACATGGATTATGAGTTCGACGCGCCTAGGTTCTATGATTTTACAAGGCTAGAAACCGATTGGGAGGCTGAAGAGGCTGAAGATTGGTTCAGATACGCCGGAAGTTACCCTTCGTCTCCTTTTATCGTGAGATTGTTGAATTGGCACAAAGGCAATTCTCTTGAGGAAATAACGGACACCTCTGTGGAATTCAAAGATGTTGAATGCATTAAATGTGCTAGCATCGAGTCGAAGAATAGCATGGAAGCTGAGGGTTCTTCAATAGAAGATGATAGTAACGGAGGAGTAAAATGCTCTAATAAAATGGATCAAGATACGCCAAAAGCTAAAACCAAGTCCTCGGTCAAGTCACCATCCATATCAAGGAGTTCAACTTTGATGAAACCCACAGCGAGTCAATTAGCCAAGCAAAAACAGCGTCGTCATGAAGTTCGACAATCTCACTCCAATCGATTATCGAGGAGGCTTGAGAAGAAGCTAGGGAAAGAGAATTCACCGAGTTCTCCATTATTCGATAGTGTAGCAACTAAAAGACAGAAGTTGGAGGCTGGCTATGTGCGGAAGGTTTCTCAACTTAAGCATCAACCTCTTTGGTTACACAAGTCGCCAAAAAAGGTTGGAACTGCTGTAACGTCACCAAATGGTAGACCTAAAGTCACCATTCCTAGAGAACCAAACTTGGAAACAGCACAAAGGGCACAAAGACGTAGGTATAAGACTATTGCGAAAGATGGAGAACAAGCAAAAATTATCAAGGAGCCTCCATGGACCCTGCCTAAGAAGAGCACACCACAAGCAAAAGAATTTCAAGTGTTTTATTTCAGGACATCACAAAGAGCTAAGCAAAGAACAGTTGATAATGTGACAAACACACCGATTTTTAGCTGTTTATCACCAACTGAAGCCACAGAGATTAAAGGACCAAACTCTGCCTCTGCCAAAAGTGATAAATGCAAAGTACTCTCTCTTAAAAAGAAGACATTGTCAAGTAAAGAAGGAACTGGTGCTATCCCAAATATCAAACAGGAAAGCAGACTAACAAGTCCAAGGGAATTAAAGTTTGACAAGAGGTTTATGAAGGAGCCACCAACAGATTTATTCAGTAAGCTCTCACTTGCACCTGAAGCCCATCATAATGCAAATCCTGAGCTTAAAACTGCCTATGCCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2_importin

Protein Analysis

409

Amino Acids

46.4

Weight (kDa)

9.34

Isoelectric Point (pI)

57.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2_importin PF12214 237 - 373 3.8e-12 Cell cycle regulated microtubule associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1098
AccB7I CCANNNNNTGG 1 cut(s) 16
AccI GTMKAC 1 cut(s) 703
AccII CGCG 1 cut(s) 80
AciI CCGC 1 cut(s) 616
AclWI GGATC 1 cut(s) 372
AcsI RAATTY 3 cut(s) 245, 547, 860
AcuI CTGAAG 4 cut(s) 147, 156, 978, 1200
AfaI GTAC 1 cut(s) 1017
AfiI CCNNNNNNNGG 2 cut(s) 16, 420
AflII CTTAAG 1 cut(s) 632
AgsI TTSAA 6 cut(s) 196, 250, 260, 318, 429, 866
AhdI GACNNNNNGTC 1 cut(s) 710
AjnI CCWGG 1 cut(s) 9
AleI CACNNNNGTG 1 cut(s) 239
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 7 cut(s) 305, 383, 535, 896, 942, 1165, 1207
AluI AGCT 7 cut(s) 305, 383, 535, 896, 942, 1165, 1207
Alw21I GWGCWC 1 cut(s) 845
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 1 cut(s) 372
ApoI RAATTY 3 cut(s) 245, 547, 860
ArsI GACNNNNNNTTYG 2 cut(s) 460, 492
AspA2I CCTAGG 1 cut(s) 83
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 2 cut(s) 825, 977
AsuHPI GGTGA 6 cut(s) 59, 399, 543, 684, 706, 942
AsuNHI GCTAGC 1 cut(s) 275
AvaII GGWCC 2 cut(s) 825, 977
AvrII CCTAGG 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 757
BbsI GAAGAC 1 cut(s) 1040
Bbv12I GWGCWC 1 cut(s) 845
BbvCI CCTCAGC 1 cut(s) 306
BccI CCATC 3 cut(s) 418, 782, 1194
BciT130I CCWGG 1 cut(s) 11
BcoDI GTCTC 1 cut(s) 177
BfaI CTAG 5 cut(s) 84, 107, 276, 536, 723
BfrI CTTAAG 1 cut(s) 632
BlnI CCTAGG 1 cut(s) 83
BlpI GCTNAGC 1 cut(s) 897
BmcAI AGTACT 1 cut(s) 1017
Bme1390I CCNGG 1 cut(s) 11
Bme18I GGWCC 2 cut(s) 825, 977
BmeRI GACNNNNNGTC 1 cut(s) 710
BmgT120I GGNCC 2 cut(s) 825, 977
BmiI GGNNCC 3 cut(s) 816, 827, 1140
BmrFI CCNGG 1 cut(s) 11
BmsI GCATC 2 cut(s) 288, 646
BmtI GCTAGC 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 1040
Bpu10I CCTNAGC 2 cut(s) 306, 1203
Bpu1102I GCTNAGC 1 cut(s) 897
BpuEI CTTGAG 2 cut(s) 239, 545
Bsa29I ATCGAT 1 cut(s) 508
BsaJI CCNNGG 4 cut(s) 83, 396, 821, 1103
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 420
Bse1I ACTGG 1 cut(s) 1063
BseBI CCWGG 1 cut(s) 11
BseCI ATCGAT 1 cut(s) 508
BseDI CCNNGG 4 cut(s) 83, 396, 821, 1103
BseGI GGATG 1 cut(s) 410
BseLI CCNNNNNNNGG 2 cut(s) 16, 420
BseMII CTCAG 2 cut(s) 297, 1194
BseNI ACTGG 1 cut(s) 1063
BseRI GAGGAG 2 cut(s) 354, 532
BseSI GKGCMC 1 cut(s) 757
Bsh1236I CGCG 1 cut(s) 80
BshVI ATCGAT 1 cut(s) 508
BsiHKAI GWGCWC 1 cut(s) 845
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 2 cut(s) 16, 420
BsmAI GTCTC 1 cut(s) 177
BsmBI CGTCTC 1 cut(s) 177
BsmI GAATGC 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 757, 845
Bsp143I GATC 1 cut(s) 364
Bsp1720I GCTNAGC 1 cut(s) 897
Bsp19I CCATGG 1 cut(s) 821
BspACI CCGC 1 cut(s) 616
BspCNI CTCAG 2 cut(s) 298, 1195
BspDI ATCGAT 1 cut(s) 508
BspFNI CGCG 1 cut(s) 80
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 3 cut(s) 816, 827, 1140
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 1 cut(s) 372
BspQI GCTCTTC 1 cut(s) 833
BspTI CTTAAG 1 cut(s) 632
BsrI ACTGG 1 cut(s) 1063
BssECI CCNNGG 4 cut(s) 83, 396, 821, 1103
BssMI GATC 1 cut(s) 364
BssT1I CCWWGG 3 cut(s) 83, 821, 1103
Bst2UI CCWGG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 910
Bst6I CTCTTC 3 cut(s) 45, 123, 833
BstAFI CTTAAG 1 cut(s) 632
BstC8I GCNNGC 3 cut(s) 277, 607, 1225
BstDEI CTNAG 4 cut(s) 306, 834, 897, 1203
BstDSI CCRYGG 1 cut(s) 821
BstF5I GGATG 1 cut(s) 410
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 1 cut(s) 367
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 1 cut(s) 364
BstMWI GCNNNNNNNGC 4 cut(s) 131, 472, 752, 1181
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 757
BstUI CGCG 1 cut(s) 80
BstV2I GAAGAC 1 cut(s) 1040
Bsu15I ATCGAT 1 cut(s) 508
BsuTUI ATCGAT 1 cut(s) 508
BtgI CCRYGG 1 cut(s) 821
BtsCI GGATG 1 cut(s) 410
Cac8I GCNNGC 3 cut(s) 277, 607, 1225
CciI TCATGA 1 cut(s) 481
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 2 cut(s) 825, 977
ClaI ATCGAT 1 cut(s) 508
CseI GACGC 2 cut(s) 86, 464
Csp6I GTAC 1 cut(s) 1016
CviAII CATG 4 cut(s) 61, 298, 482, 822
CviQI GTAC 1 cut(s) 1016
DdeI CTNAG 4 cut(s) 306, 834, 897, 1203
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
DrdI GACNNNNNNGTC 1 cut(s) 1098
DriI GACNNNNNGTC 1 cut(s) 710
DseDI GACNNNNNNGTC 1 cut(s) 1098
Eam1104I CTCTTC 3 cut(s) 45, 123, 833
Eam1105I GACNNNNNGTC 1 cut(s) 710
EarI CTCTTC 3 cut(s) 45, 123, 833
Eco130I CCWWGG 3 cut(s) 83, 821, 1103
Eco47I GGWCC 2 cut(s) 825, 977
Eco57I CTGAAG 4 cut(s) 147, 156, 978, 1200
EcoRI GAATTC 2 cut(s) 245, 547
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 3 cut(s) 83, 821, 1103
EcoT22I ATGCAT 1 cut(s) 266
ErhI CCWWGG 3 cut(s) 83, 821, 1103
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 4 cut(s) 64, 301, 485, 825
FalI AAGNNNNNCTT 2 cut(s) 151, 183
FatI CATG 4 cut(s) 60, 297, 481, 821
FblI GTMKAC 1 cut(s) 703
FokI GGATG 1 cut(s) 397
FspBI CTAG 5 cut(s) 84, 107, 276, 536, 723
GlaI GCGC 1 cut(s) 81
HapII CCGG 1 cut(s) 156
HgaI GACGC 2 cut(s) 86, 464
HhaI GCGC 1 cut(s) 82
Hin1II CATG 4 cut(s) 64, 301, 485, 825
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 2 cut(s) 284, 451
HpaII CCGG 1 cut(s) 156
HphI GGTGA 6 cut(s) 59, 399, 543, 684, 706, 942
Hpy166II GTNNAC 1 cut(s) 704
Hpy188I TCNGA 1 cut(s) 149
Hpy188III TCNNGA 6 cut(s) 184, 218, 368, 482, 880, 1202
Hpy8I GTNNAC 1 cut(s) 704
Hpy99I CGWCG 2 cut(s) 80, 480
HpyAV CCTTC 4 cut(s) 177, 613, 1046, 1129
HpyCH4III ACNGT 1 cut(s) 910
HpyCH4IV ACGT 2 cut(s) 689, 763
HpyCH4V TGCA 4 cut(s) 264, 1011, 1175, 1196
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 472, 752, 1181
HpyF3I CTNAG 4 cut(s) 306, 834, 897, 1203
HpySE526I ACGT 2 cut(s) 689, 763
Hsp92II CATG 4 cut(s) 64, 301, 485, 825
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 364
LguI GCTCTTC 1 cut(s) 833
LmnI GCTCC 2 cut(s) 814, 1138
LpnPI CCDG 9 cut(s) 23, 169, 591, 842, 865, 1044, 1067, 1191, 1215
LweI GCATC 2 cut(s) 288, 646
MaeI CTAG 5 cut(s) 84, 107, 276, 536, 723
MaeII ACGT 2 cut(s) 689, 763
MaeIII GTNAC 8 cut(s) 161, 332, 405, 651, 685, 690, 712, 919
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 9 cut(s) 62, 140, 149, 301, 306, 335, 541, 850, 1045
MhlI GDGCHC 2 cut(s) 757, 845
MluCI AATT 8 cut(s) 196, 211, 245, 455, 547, 804, 860, 1109
MlyI GAGTC 2 cut(s) 293, 460
MmeI TCCRAC 2 cut(s) 579, 655
Mph1103I ATGCAT 1 cut(s) 266
MseI TTAA 7 cut(s) 30, 267, 633, 972, 1026, 1112, 1209
MslI CAYNNNNRTG 2 cut(s) 239, 1191
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 11
Mva1269I GAATGC 1 cut(s) 266
MvaI CCWGG 1 cut(s) 11
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 4 cut(s) 131, 472, 752, 1181
NcoI CCATGG 1 cut(s) 821
NdeII GATC 1 cut(s) 364
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 4 cut(s) 64, 301, 485, 825
NlaIV GGNNCC 3 cut(s) 816, 827, 1140
NmuCI GTSAC 4 cut(s) 405, 690, 712, 919
NsiI ATGCAT 1 cut(s) 266
OliI CACNNNNGTG 1 cut(s) 239
PagI TCATGA 1 cut(s) 481
PciSI GCTCTTC 1 cut(s) 833
PctI GAATGC 1 cut(s) 266
PflFI GACNNNGTC 1 cut(s) 1039
PflMI CCANNNNNTGG 1 cut(s) 16
PleI GAGTC 2 cut(s) 292, 459
PpsI GAGTC 2 cut(s) 292, 459
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
PspN4I GGNNCC 3 cut(s) 816, 827, 1140
PspPI GGNCC 2 cut(s) 825, 977
PsyI GACNNNGTC 1 cut(s) 1039
RsaI GTAC 1 cut(s) 1017
RsaNI GTAC 1 cut(s) 1016
RseI CAYNNNNRTG 2 cut(s) 239, 1191
SapI GCTCTTC 1 cut(s) 833
SaqAI TTAA 7 cut(s) 30, 267, 633, 972, 1026, 1112, 1209
Sau3AI GATC 1 cut(s) 364
Sau96I GGNCC 2 cut(s) 825, 977
ScaI AGTACT 1 cut(s) 1017
SchI GAGTC 2 cut(s) 293, 460
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 2 cut(s) 757, 845
SfaNI GCATC 2 cut(s) 288, 646
SinI GGWCC 2 cut(s) 825, 977
SmiMI CAYNNNNRTG 2 cut(s) 239, 1191
SmlI CTYRAG 3 cut(s) 218, 524, 632
SmoI CTYRAG 3 cut(s) 218, 524, 632
Sse9I AATT 8 cut(s) 196, 211, 245, 455, 547, 804, 860, 1109
SsiI CCGC 1 cut(s) 616
SspMI CTAG 5 cut(s) 84, 107, 276, 536, 723
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 3 cut(s) 83, 821, 1103
TaaI ACNGT 1 cut(s) 910
TaiI ACGT 2 cut(s) 692, 766
TaqI TCGA 8 cut(s) 42, 75, 282, 287, 490, 508, 515, 570
TaqII GACCGA 1 cut(s) 388
TasI AATT 8 cut(s) 196, 211, 245, 455, 547, 804, 860, 1109
TatI WGTACW 1 cut(s) 1015
Tru1I TTAA 7 cut(s) 30, 267, 633, 972, 1026, 1112, 1209
Tru9I TTAA 7 cut(s) 30, 267, 633, 972, 1026, 1112, 1209
TseFI GTSAC 4 cut(s) 405, 690, 712, 919
Tsp45I GTSAC 4 cut(s) 405, 690, 712, 919
TspDTI ATGAA 3 cut(s) 452, 498, 1148
TspGWI ACGGA 2 cut(s) 245, 351
Tth111I GACNNNGTC 1 cut(s) 1039
Van91I CCANNNNNTGG 1 cut(s) 16
Vha464I CTTAAG 1 cut(s) 632
VpaK11BI GGWCC 2 cut(s) 825, 977
XapI RAATTY 3 cut(s) 245, 547, 860
XmaJI CCTAGG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 703
XspI CTAG 5 cut(s) 84, 107, 276, 536, 723
ZrmI AGTACT 1 cut(s) 1017
Zsp2I ATGCAT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.