Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006192

Physical Location & Seq

Genomic Coordinates Forward (+)

28132548 .. 28136589

Gene Structure 4042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G283500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGGCGCAGAAATGCAGGATTTTATGAGGGAAGCTTACGAGGGCGATGAAATTGATTTGGACTACGAGTTCGATGCGCCTAAGTTCTACGATTTCACTCAGCCCGATTCCGATTTGGAGGCCACGGAAGCCGAAGACTGGTTCCGATTCGCCGGAAGTTATCCGCCTTCGCCTTTCATTATAAAATTGTTGATGAATTGGCAAAAAGACATTCCTGTGGAACCTGTAAAAGTCTCTGCTGAATCCAAAGATGTTGAAGGCATTAGAGACAGTGATTCAAATAATTGCATGGAAGCTGAGGTCTCTGCAGCAGTAGATGAGAATAACAGAGAATTTTCTAATCACATGGCTCAAGATACTCAAAACCCTAAAACAAACTCCCCAGCCAAGTCACCGCCTCTATCAAGGATTTCAACTTTGATGAAACCCACAGCAAGTCAGTTGGCCAAGCAAAATCATCGTCGAGAACCTCACATGAACCGGTTATCGAGGAGGTTTGGGAAGAAGCTTGAGAAAGCTGATGATAATTCACAGAAATCTCCTTCTAGTGATACCCGTTGTACTAAAAGACAGAAGTTGGAGGCTGGCTATTTACGCAAGGTTGCTGAACTTAAGCATCAACCTTTTTGGTTGCACAAGGTGCCAATAAAGGTTGGAGGTGATGTTATCACAGTAAATGCTAGACCTAAAGTAACCATTCCTAGAGAACCGAATTTGGAAACGGCACATAGAGCACAAAGACGTAGGTATAAGGTTAATGTCAAACCAGGAGAACAAGCAAAAATTCTCAAGGCTCCTCCATTGCCTACCCCTAAAAAGAGCACAGTACCAGCAACAGAGTTTCAGGTGTTTAACCTCAGGACATCGGCAAGAGCTTATGCAATGCAACAGACATTTAATAACGTGACAAATGCACCTAATTCTAATGAAAATACAGAGATTAAAGGGCCAACCTTTGGCTATGCCTTAACACAAGAGAAAAGTGGAACGGCTTACAAATGCACAGCTTGCTCTATTAAAAAGAAGGAATTCAAGTTTGCAATTGACAAGAGGTTTCTAAAGGAGCCACCAACAGATTTATTTAGTAAGCTCTCCCTTGCATCTGAAGCCCAGAACAACGCAAAACCTCAGTCCAAAAGTGCCTTTGCCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2_importin

Protein Analysis

385

Amino Acids

43.41

Weight (kDa)

9.17

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07170 AT5G07170 AT5G62240
fragaria_vesca	FvH4_7g28280 FvH4_7g28280 FvH4_7g28280 FvH4_7g28280
malus_domestica	MD01G1187200.v1.1 MD07G1259000.v1.1 MD07G1259100.v1.1 MD07G1259400.v1.1
prunus_persica	Prupe.2G283500_v2.0.a1
pyrus_communis	pycom01g19910 pycom07g23180 pycom07g23190
rosa_chinensis	RchiOBHm_Chr1g0375251 RchiOBHm_Chr3g0465611
rosa_laevigata	RLG00000026674
rosa_multiflora	Rmu_sc0000554.1_g000033
rosa_roxburghii	Rroxscaffold_4G00282900
rosa_rugosa	Rorug01G0389400 Rorug01G0389500
rosa_samantha	Rh1AG400200 Rh1BG364200 Rh1CG377400 Rh1DG394800
rosa_wichuraiana	Rw1G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	640
AccB7I	CCANNNNNTGG	1 cut(s)	956
AciI	CCGC	2 cut(s)	164, 395
AcoI	YGGCCR	1 cut(s)	444
AcsI	RAATTY	4 cut(s)	332, 712, 783, 1028
AcuI	CTGAAG	1 cut(s)	1125
AdeI	CACNNNGTG	1 cut(s)	640
AfaI	GTAC	2 cut(s)	562, 828
AfiI	CCNNNNNNNGG	2 cut(s)	138, 956
AflII	CTTAAG	1 cut(s)	611
AgeI	ACCGGT	1 cut(s)	480
AgsI	TTSAA	4 cut(s)	257, 279, 414, 1033
AjnI	CCWGG	1 cut(s)	766
AloI	GAACNNNNNNTCC	2 cut(s)	53, 85
AluBI	AGCT	7 cut(s)	35, 296, 508, 518, 875, 1007, 1090
AluI	AGCT	7 cut(s)	35, 296, 508, 518, 875, 1007, 1090
Alw21I	GWGCWC	2 cut(s)	736, 824
Alw26I	GTCTC	3 cut(s)	238, 261, 307
AoxI	GGCC	3 cut(s)	120, 444, 947
ApeKI	GCWGC	1 cut(s)	308
ApoI	RAATTY	4 cut(s)	332, 712, 783, 1028
ArsI	GACNNNNNNTTYG	6 cut(s)	53, 85, 445, 477, 1115, 1147
AsiGI	ACCGGT	1 cut(s)	480
Asp700I	GAANNNNTTC	1 cut(s)	1028
AspLEI	GCGC	2 cut(s)	8, 79
AspS9I	GGNCC	1 cut(s)	947
AsuHPI	GGTGA	2 cut(s)	384, 671
AxyI	CCTNAGG	1 cut(s)	857
BalI	TGGCCA	1 cut(s)	446
BanI	GGYRCC	1 cut(s)	640
BbsI	GAAGAC	1 cut(s)	141
Bbv12I	GWGCWC	2 cut(s)	736, 824
BbvCI	CCTCAGC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	320
BceAI	ACGGC	2 cut(s)	738, 1005
BcgI	CGANNNNNNTGC	4 cut(s)	56, 90, 440, 474
BciT130I	CCWGG	1 cut(s)	768
BcoDI	GTCTC	3 cut(s)	238, 261, 307
BfaI	CTAG	3 cut(s)	546, 681, 702
BfmI	CTRYAG	1 cut(s)	306
BfrI	CTTAAG	1 cut(s)	611
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	768
BmgT120I	GGNCC	1 cut(s)	947
BmiI	GGNNCC	5 cut(s)	143, 222, 642, 795, 1065
BmrFI	CCNGG	1 cut(s)	768
BmsI	GCATC	3 cut(s)	64, 625, 1109
BpiI	GAAGAC	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	3 cut(s)	336, 530, 773
BsaI	GGTCTC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	480
BsaXI	ACNNNNNCTCC	2 cut(s)	648, 678
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 956
Bse118I	RCCGGY	1 cut(s)	480
Bse1I	ACTGG	1 cut(s)	143
Bse21I	CCTNAGG	1 cut(s)	857
Bse3DI	GCAATG	2 cut(s)	800, 888
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	1 cut(s)	123
BseLI	CCNNNNNNNGG	2 cut(s)	138, 956
BseMI	GCAATG	2 cut(s)	800, 888
BseMII	CTCAG	4 cut(s)	113, 288, 871, 1142
BseNI	ACTGG	1 cut(s)	143
BseRI	GAGGAG	2 cut(s)	505, 786
BseXI	GCAGC	1 cut(s)	320
BseYI	CCCAGC	1 cut(s)	382
BshFI	GGCC	3 cut(s)	122, 446, 949
BshNI	GGYRCC	1 cut(s)	640
BshTI	ACCGGT	1 cut(s)	480
BsiHKAI	GWGCWC	2 cut(s)	736, 824
BsiSI	CCGG	2 cut(s)	153, 481
BslI	CCNNNNNNNGG	2 cut(s)	138, 956
BsmAI	GTCTC	3 cut(s)	238, 261, 307
BsnI	GGCC	3 cut(s)	122, 446, 949
Bso31I	GGTCTC	1 cut(s)	307
Bsp1286I	GDGCHC	2 cut(s)	736, 824
BspACI	CCGC	2 cut(s)	164, 395
BspANI	GGCC	3 cut(s)	122, 446, 949
BspCNI	CTCAG	4 cut(s)	112, 289, 870, 1141
BspLI	GGNNCC	5 cut(s)	143, 222, 642, 795, 1065
BspMAI	CTGCAG	1 cut(s)	310
BspT107I	GGYRCC	1 cut(s)	640
BspTI	CTTAAG	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	307
BsrDI	GCAATG	2 cut(s)	800, 888
BsrFI	RCCGGY	1 cut(s)	480
BsrI	ACTGG	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	480
BssECI	CCNNGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	3 cut(s)	272, 673, 826
BstAFI	CTTAAG	1 cut(s)	611
BstAPI	GCANNNNNTGC	2 cut(s)	640, 1008
BstC8I	GCNNGC	3 cut(s)	586, 1009, 1150
BstDEI	CTNAG	5 cut(s)	81, 99, 297, 857, 1128
BstDSI	CCRYGG	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	8, 79
BstMAI	GTCTC	3 cut(s)	238, 261, 307
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 594, 640, 731, 1008, 1106
BstNI	CCWGG	1 cut(s)	768
BstSCI	CCNGG	1 cut(s)	766
BstSFI	CTRYAG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	320
BstV2I	GAAGAC	1 cut(s)	141
Bsu36I	CCTNAGG	1 cut(s)	857
BsuRI	GGCC	3 cut(s)	122, 446, 949
BtgI	CCRYGG	1 cut(s)	123
BtgZI	GCGATG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	3 cut(s)	586, 1009, 1150
CfoI	GCGC	2 cut(s)	8, 79
Cfr10I	RCCGGY	1 cut(s)	480
Cfr13I	GGNCC	1 cut(s)	947
Csp6I	GTAC	2 cut(s)	561, 827
CspAI	ACCGGT	1 cut(s)	480
CviAII	CATG	3 cut(s)	289, 346, 475
CviQI	GTAC	2 cut(s)	561, 827
DdeI	CTNAG	5 cut(s)	81, 99, 297, 857, 1128
DraIII	CACNNNGTG	1 cut(s)	640
EaeI	YGGCCR	1 cut(s)	444
EciI	GGCGGA	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	1125
Eco81I	CCTNAGG	1 cut(s)	857
EcoRI	GAATTC	1 cut(s)	1028
EcoRII	CCWGG	1 cut(s)	766
FaeI	CATG	3 cut(s)	292, 349, 478
FaiI	YATR	9 cut(s)	26, 182, 290, 347, 476, 729, 750, 879, 963
FatI	CATG	3 cut(s)	288, 345, 474
Fnu4HI	GCNGC	1 cut(s)	309
Fsp4HI	GCNGC	1 cut(s)	309
FspBI	CTAG	3 cut(s)	546, 681, 702
GlaI	GCGC	2 cut(s)	7, 78
GluI	GCNGC	1 cut(s)	309
GsaI	CCCAGC	1 cut(s)	386
HaeIII	GGCC	3 cut(s)	122, 446, 949
HapII	CCGG	2 cut(s)	153, 481
HhaI	GCGC	2 cut(s)	8, 79
Hin1II	CATG	3 cut(s)	292, 349, 478
Hin6I	GCGC	2 cut(s)	6, 77
HinP1I	GCGC	2 cut(s)	6, 77
HindIII	AAGCTT	2 cut(s)	33, 506
HinfI	GANTC	4 cut(s)	107, 147, 242, 275
HpaII	CCGG	2 cut(s)	153, 481
HphI	GGTGA	2 cut(s)	384, 671
Hpy188I	TCNGA	3 cut(s)	112, 146, 1105
Hpy188III	TCNNGA	3 cut(s)	353, 464, 859
Hpy99I	CGWCG	1 cut(s)	465
HpyAV	CCTTC	4 cut(s)	177, 251, 552, 1018
HpyCH4III	ACNGT	3 cut(s)	272, 673, 826
HpyCH4IV	ACGT	2 cut(s)	742, 903
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 594, 640, 731, 1008, 1106
HpyF3I	CTNAG	5 cut(s)	81, 99, 297, 857, 1128
HpySE526I	ACGT	2 cut(s)	742, 903
Hsp92II	CATG	3 cut(s)	292, 349, 478
HspAI	GCGC	2 cut(s)	6, 77
LmnI	GCTCC	2 cut(s)	799, 1063
Lsp1109I	GCAGC	1 cut(s)	320
LweI	GCATC	3 cut(s)	64, 625, 1109
MaeI	CTAG	3 cut(s)	546, 681, 702
MaeII	ACGT	2 cut(s)	742, 903
MaeIII	GTNAC	3 cut(s)	390, 691, 904
MboII	GAAGA	2 cut(s)	146, 514
MfeI	CAATTG	1 cut(s)	1041
MhlI	GDGCHC	2 cut(s)	736, 824
MlsI	TGGCCA	1 cut(s)	446
MluNI	TGGCCA	1 cut(s)	446
MmeI	TCCRAC	2 cut(s)	558, 634
Mox20I	TGGCCA	1 cut(s)	446
MroXI	GAANNNNTTC	1 cut(s)	1028
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	7 cut(s)	612, 756, 852, 897, 942, 968, 1017
MslI	CAYNNNNRTG	1 cut(s)	215
Msp20I	TGGCCA	1 cut(s)	446
MspCI	CTTAAG	1 cut(s)	611
MspI	CCGG	2 cut(s)	153, 481
MspR9I	CCNGG	1 cut(s)	768
MunI	CAATTG	1 cut(s)	1041
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	6 cut(s)	128, 594, 640, 731, 1008, 1106
NlaIII	CATG	3 cut(s)	292, 349, 478
NlaIV	GGNNCC	5 cut(s)	143, 222, 642, 795, 1065
NmuCI	GTSAC	2 cut(s)	390, 904
PdmI	GAANNNNTTC	1 cut(s)	1028
PfeI	GAWTC	4 cut(s)	107, 147, 242, 275
PflMI	CCANNNNNTGG	1 cut(s)	956
PinAI	ACCGGT	1 cut(s)	480
PkrI	GCNGC	1 cut(s)	310
PsiI	TTATAA	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	766
PspFI	CCCAGC	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	5 cut(s)	143, 222, 642, 795, 1065
PspPI	GGNCC	1 cut(s)	947
PstI	CTGCAG	1 cut(s)	310
RsaI	GTAC	2 cut(s)	562, 828
RsaNI	GTAC	2 cut(s)	561, 827
RseI	CAYNNNNRTG	1 cut(s)	215
SaqAI	TTAA	7 cut(s)	612, 756, 852, 897, 942, 968, 1017
SatI	GCNGC	1 cut(s)	309
Sau96I	GGNCC	1 cut(s)	947
ScrFI	CCNGG	1 cut(s)	768
SduI	GDGCHC	2 cut(s)	736, 824
SfaNI	GCATC	3 cut(s)	64, 625, 1109
SfcI	CTRYAG	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	4 cut(s)	351, 509, 611, 788
SmoI	CTYRAG	4 cut(s)	351, 509, 611, 788
SsiI	CCGC	2 cut(s)	164, 395
SspMI	CTAG	3 cut(s)	546, 681, 702
StyD4I	CCNGG	1 cut(s)	766
TaaI	ACNGT	3 cut(s)	272, 673, 826
TaiI	ACGT	2 cut(s)	745, 906
TaqI	TCGA	3 cut(s)	72, 463, 488
TatI	WGTACW	1 cut(s)	560
TfiI	GAWTC	4 cut(s)	107, 147, 242, 275
Tru1I	TTAA	7 cut(s)	612, 756, 852, 897, 942, 968, 1017
Tru9I	TTAA	7 cut(s)	612, 756, 852, 897, 942, 968, 1017
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	2 cut(s)	390, 904
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	2 cut(s)	390, 904
TspDTI	ATGAA	6 cut(s)	63, 166, 209, 437, 491, 942
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	277
Van91I	CCANNNNNTGG	1 cut(s)	956
Vha464I	CTTAAG	1 cut(s)	611
XapI	RAATTY	4 cut(s)	332, 712, 783, 1028
XmnI	GAANNNNTTC	1 cut(s)	1028
XspI	CTAG	3 cut(s)	546, 681, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.