Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000554.1

Orthogroup ID

OG0006192

Physical Location & Seq

Genomic Coordinates Forward (+)

149504 .. 151512

Gene Structure 2009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000554.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggacgacgaagaaatgatggagtttgttaaggaggctttcgagggtgaagaaattgacatggattatgagttcgacgcgcctaggttctatgattttacaacgcttgaaaccgattgggaggctgaagtggctgaagattggttcagatacgccggaagttatccttcgtctcgtaagcaatttacagagctcgttaaatatttgatcacatttctagaaatggaattggatgattttgaatcactagcaatatcctattgtctgcttgagaagaagctagggaaagtcgcggagaattcaccgagttctccattattcgatagtgtagcaactaaaagacagaagttggaggctggctatgtgcggaaggttggaactgctgtaacgtcaccaaatggtagacctaaagtcaccattcctagagaaccaaacttggaaacagcacaaagggcacaaagacgtaggtataagactattgcgaaagatggagaacaagcaaaagtaagtgtctattcccttaacgctcctttagcagaaacgtttgtgcttcaagtcaatagtatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2_importin

Protein Analysis

189

Amino Acids

21.73

Weight (kDa)

4.67

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07170 AT5G07170 AT5G62240
fragaria_vesca	FvH4_7g28280 FvH4_7g28280 FvH4_7g28280 FvH4_7g28280
malus_domestica	MD01G1187200.v1.1 MD07G1259000.v1.1 MD07G1259100.v1.1 MD07G1259400.v1.1
prunus_persica	Prupe.2G283500_v2.0.a1
pyrus_communis	pycom01g19910 pycom07g23180 pycom07g23190
rosa_chinensis	RchiOBHm_Chr1g0375251 RchiOBHm_Chr3g0465611
rosa_laevigata	RLG00000026674
rosa_multiflora	Rmu_sc0000554.1_g000033
rosa_roxburghii	Rroxscaffold_4G00282900
rosa_rugosa	Rorug01G0389400 Rorug01G0389500
rosa_samantha	Rh1AG400200 Rh1BG364200 Rh1CG377400 Rh1DG394800
rosa_wichuraiana	Rw1G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	403
AccII	CGCG	2 cut(s)	80, 293
AciI	CCGC	2 cut(s)	293, 367
AclI	AACGTT	1 cut(s)	542
AcsI	RAATTY	1 cut(s)	298
AcuI	CTGAAG	2 cut(s)	147, 156
AgsI	TTSAA	3 cut(s)	110, 242, 554
AhdI	GACNNNNNGTC	1 cut(s)	410
AloI	GAACNNNNNNTCC	2 cut(s)	56, 88
AluBI	AGCT	2 cut(s)	193, 280
AluI	AGCT	2 cut(s)	193, 280
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	298
AspA2I	CCTAGG	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	82
AsuHPI	GGTGA	4 cut(s)	59, 294, 384, 406
AvrII	CCTAGG	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BccI	CCATC	2 cut(s)	13, 482
BclI	TGATCA	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	177
BfaI	CTAG	5 cut(s)	84, 218, 248, 281, 423
BlnI	CCTAGG	1 cut(s)	83
BmeRI	GACNNNNNGTC	1 cut(s)	410
BpuEI	CTTGAG	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	1 cut(s)	238
BseSI	GKGCMC	1 cut(s)	457
Bsh1236I	CGCG	2 cut(s)	80, 293
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	1 cut(s)	156
BsmAI	GTCTC	1 cut(s)	177
BsmBI	CGTCTC	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	195, 457
Bsp143I	GATC	1 cut(s)	207
BspACI	CCGC	2 cut(s)	293, 367
BspFNI	CGCG	2 cut(s)	80, 293
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	2 cut(s)	80, 293
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	1 cut(s)	210
BstMAI	GTCTC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 452, 533
BstSLI	GKGCMC	1 cut(s)	457
BstUI	CGCG	2 cut(s)	80, 293
BtsCI	GGATG	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	358
CfoI	GCGC	1 cut(s)	82
CseI	GACGC	1 cut(s)	86
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	7 cut(s)	38, 125, 134, 193, 280, 356, 360
CviKI_1	RGCY	7 cut(s)	38, 125, 134, 193, 280, 356, 360
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
DriI	GACNNNNNGTC	1 cut(s)	410
Eam1105I	GACNNNNNGTC	1 cut(s)	410
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	83
Eco24I	GRGCYC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	193
Eco57I	CTGAAG	2 cut(s)	147, 156
EcoICRI	GAGCTC	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	298
EcoT14I	CCWWGG	1 cut(s)	83
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	1 cut(s)	64
FaiI	YATR	5 cut(s)	62, 69, 93, 363, 471
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
FatI	CATG	1 cut(s)	60
FbaI	TGATCA	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	403
FokI	GGATG	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	195
FspBI	CTAG	5 cut(s)	84, 218, 248, 281, 423
GlaI	GCGC	1 cut(s)	81
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	64
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	4 cut(s)	59, 294, 384, 406
Hpy166II	GTNNAC	1 cut(s)	404
Hpy188I	TCNGA	1 cut(s)	149
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	404
Hpy99I	CGWCG	2 cut(s)	11, 80
HpyAV	CCTTC	2 cut(s)	177, 364
HpyCH4IV	ACGT	3 cut(s)	389, 463, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 452, 533
HpySE526I	ACGT	3 cut(s)	389, 463, 542
Hsp92II	CATG	1 cut(s)	64
HspAI	GCGC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	532
LpnPI	CCDG	2 cut(s)	169, 342
MaeI	CTAG	5 cut(s)	84, 218, 248, 281, 423
MaeII	ACGT	3 cut(s)	389, 463, 542
MaeIII	GTNAC	3 cut(s)	385, 390, 412
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	4 cut(s)	23, 62, 149, 286
MhlI	GDGCHC	2 cut(s)	195, 457
MluCI	AATT	4 cut(s)	54, 182, 227, 298
MmeI	TCCRAC	2 cut(s)	330, 355
MnlI	CCTC	4 cut(s)	28, 37, 115, 346
MseI	TTAA	3 cut(s)	30, 198, 522
MspI	CCGG	1 cut(s)	156
MvnI	CGCG	2 cut(s)	80, 293
MwoI	GCNNNNNNNGC	3 cut(s)	131, 452, 533
NdeII	GATC	1 cut(s)	207
NlaIII	CATG	1 cut(s)	64
NmuCI	GTSAC	2 cut(s)	390, 412
PfeI	GAWTC	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	195
Psp1406I	AACGTT	1 cut(s)	542
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	3 cut(s)	30, 198, 522
Sau3AI	GATC	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	195, 457
SetI	ASST	9 cut(s)	89, 195, 282, 375, 392, 409, 466, 470, 545
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
Sse9I	AATT	4 cut(s)	54, 182, 227, 298
SsiI	CCGC	2 cut(s)	293, 367
SspI	AATATT	1 cut(s)	203
SspMI	CTAG	5 cut(s)	84, 218, 248, 281, 423
SstI	GAGCTC	1 cut(s)	195
StyI	CCWWGG	1 cut(s)	83
TaiI	ACGT	3 cut(s)	392, 466, 545
TaqI	TCGA	3 cut(s)	42, 75, 321
TasI	AATT	4 cut(s)	54, 182, 227, 298
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	3 cut(s)	30, 198, 522
Tru9I	TTAA	3 cut(s)	30, 198, 522
TseFI	GTSAC	2 cut(s)	390, 412
Tsp45I	GTSAC	2 cut(s)	390, 412
XapI	RAATTY	1 cut(s)	298
XbaI	TCTAGA	1 cut(s)	217
XmaJI	CCTAGG	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	403
XspI	CTAG	5 cut(s)	84, 218, 248, 281, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.