Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006192

Physical Location & Seq

Genomic Coordinates Forward (+)

32502623 .. 32505950

Gene Structure 3328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1259100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAAGCGGAGGTCTCTGCAGTAGTAGACGATAATATTAGAGAACTCCCTATTCACATGGCTCAAGACACTCCAAGCGCTAAACCAAAGTCCCCGGGCAAGTCACCACCTCTATCAAGGAGTTCAACGCTAATGAAACCCACGGCAAGTCAGCTGGCCAAGCAAAAGCACCGCCGAGAAGTTCACTCCAACCGGTTATTAAGGAGAGTGGCGAAAAAGCTCGGGAAACTTGATGAGAAATCACAGAATTCTCCACCACCTACGAAAAGACAGAAGTTGGAGGCTGGCTATGTACGCAAGGTTGCTGAACAGCTCAAGCATCAACCTCTTTGGTTATACAAGGTGCCGAAAAAGGTCGGAGCTGATGCTGCCAGACCTAAAGTTACCGTTTCGAAGGAACCAAATTTGGAAACAGCAAATAGAGCACAAAGACGTAGGTATAAGGTTAATGCCAAACCAGGAGAACAATCAAAAATTCACAGGGCTCCTCCATGGCCTAGCCCGAAAAAGAGCACAATTCCAGCAACAGAGTTTCAGGTAACAAATGGACCTAATTCTAGTTATTTATCAGAAAATGAGACTACAGAGATCGAAAGGTTAATAATTTCAATAGTAAAGAAAAAGGCGATCCCAAGCCAACGAGGCTTCCCGCTTTACGAAGGTCGAGGGAACGTCTATCGTACGCGGAGTTATCCATGCTTTGCAAAGAGGTTGTTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2_importin

Protein Analysis

241

Amino Acids

27.14

Weight (kDa)

10.43

Isoelectric Point (pI)

53.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07170 AT5G07170 AT5G62240
fragaria_vesca	FvH4_7g28280 FvH4_7g28280 FvH4_7g28280 FvH4_7g28280
malus_domestica	MD01G1187200.v1.1 MD07G1259000.v1.1 MD07G1259100.v1.1 MD07G1259400.v1.1
prunus_persica	Prupe.2G283500_v2.0.a1
pyrus_communis	pycom01g19910 pycom07g23180 pycom07g23190
rosa_chinensis	RchiOBHm_Chr1g0375251 RchiOBHm_Chr3g0465611
rosa_laevigata	RLG00000026674
rosa_multiflora	Rmu_sc0000554.1_g000033
rosa_roxburghii	Rroxscaffold_4G00282900
rosa_rugosa	Rorug01G0389400 Rorug01G0389500
rosa_samantha	Rh1AG400200 Rh1BG364200 Rh1CG377400 Rh1DG394800
rosa_wichuraiana	Rw1G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	343
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	1 cut(s)	685
AciI	CCGC	4 cut(s)	8, 172, 650, 685
AclWI	GGATC	1 cut(s)	622
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	3 cut(s)	247, 403, 474
AfaI	GTAC	2 cut(s)	294, 682
AfeI	AGCGCT	1 cut(s)	79
AgeI	ACCGGT	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	126, 609
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	4 cut(s)	154, 220, 313, 362
AluI	AGCT	4 cut(s)	154, 220, 313, 362
Alw21I	GWGCWC	2 cut(s)	427, 515
Alw26I	GTCTC	2 cut(s)	19, 572
AlwI	GGATC	1 cut(s)	622
Ama87I	CYCGRG	2 cut(s)	94, 221
Aor51HI	AGCGCT	1 cut(s)	79
AoxI	GGCC	2 cut(s)	156, 494
ApeKI	GCWGC	1 cut(s)	368
ApoI	RAATTY	3 cut(s)	247, 403, 474
AsiGI	ACCGGT	1 cut(s)	192
AspLEI	GCGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	548
AsuC2I	CCSGG	2 cut(s)	95, 96
AsuHPI	GGTGA	1 cut(s)	96
AsuII	TTCGAA	1 cut(s)	392
AvaI	CYCGRG	2 cut(s)	94, 221
AvaII	GGWCC	1 cut(s)	548
BalI	TGGCCA	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	343
BanII	GRGCYC	1 cut(s)	487
Bbv12I	GWGCWC	2 cut(s)	427, 515
BbvI	GCAGC	1 cut(s)	355
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	1 cut(s)	459
BcnI	CCSGG	2 cut(s)	95, 96
BcoDI	GTCTC	2 cut(s)	19, 572
BfaI	CTAG	2 cut(s)	498, 558
BfmI	CTRYAG	2 cut(s)	18, 582
BfoI	RGCGCY	1 cut(s)	81
BglI	GCCNNNNNGGC	1 cut(s)	642
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme1390I	CCNGG	3 cut(s)	95, 96, 459
Bme18I	GGWCC	1 cut(s)	548
BmeT110I	CYCGRG	2 cut(s)	94, 221
BmgT120I	GGNCC	1 cut(s)	548
BmiI	GGNNCC	3 cut(s)	345, 399, 486
BmrFI	CCNGG	3 cut(s)	95, 96, 459
BmsI	GCATC	2 cut(s)	328, 355
Bpu14I	TTCGAA	1 cut(s)	392
BpuEI	CTTGAG	2 cut(s)	48, 299
BpuMI	CCSGG	2 cut(s)	95, 96
BsaI	GGTCTC	1 cut(s)	19
BsaJI	CCNNGG	4 cut(s)	93, 94, 141, 491
BsaWI	WCCGGW	1 cut(s)	192
Bse118I	RCCGGY	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	4 cut(s)	93, 94, 141, 491
BseRI	GAGGAG	1 cut(s)	477
BseXI	GCAGC	1 cut(s)	355
Bsh1236I	CGCG	1 cut(s)	685
BshFI	GGCC	2 cut(s)	158, 496
BshNI	GGYRCC	1 cut(s)	343
BshTI	ACCGGT	1 cut(s)	192
BsiHKAI	GWGCWC	2 cut(s)	427, 515
BsiHKCI	CYCGRG	2 cut(s)	94, 221
BsiSI	CCGG	2 cut(s)	95, 193
BsiWI	CGTACG	1 cut(s)	680
BslFI	GGGAC	1 cut(s)	76
BsmAI	GTCTC	2 cut(s)	19, 572
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	158, 496
Bso31I	GGTCTC	1 cut(s)	19
BsoBI	CYCGRG	2 cut(s)	94, 221
Bsp119I	TTCGAA	1 cut(s)	392
Bsp1286I	GDGCHC	3 cut(s)	427, 487, 515
Bsp143I	GATC	2 cut(s)	588, 627
Bsp19I	CCATGG	1 cut(s)	491
BspACI	CCGC	4 cut(s)	8, 172, 650, 685
BspANI	GGCC	2 cut(s)	158, 496
BspFNI	CGCG	1 cut(s)	685
BspLI	GGNNCC	3 cut(s)	345, 399, 486
BspMAI	CTGCAG	1 cut(s)	22
BspPI	GGATC	1 cut(s)	622
BspT104I	TTCGAA	1 cut(s)	392
BspT107I	GGYRCC	1 cut(s)	343
BspTNI	GGTCTC	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	192
BssAI	RCCGGY	1 cut(s)	192
BssECI	CCNNGG	4 cut(s)	93, 94, 141, 491
BssMI	GATC	2 cut(s)	588, 627
BssT1I	CCWWGG	1 cut(s)	491
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	1 cut(s)	388
BstBI	TTCGAA	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	156, 286
BstDSI	CCRYGG	2 cut(s)	141, 491
BstFNI	CGCG	1 cut(s)	685
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	2 cut(s)	591, 630
BstMAI	GTCTC	2 cut(s)	19, 572
BstMBI	GATC	2 cut(s)	588, 627
BstMWI	GCNNNNNNNGC	5 cut(s)	160, 294, 368, 422, 642
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	3 cut(s)	93, 94, 457
BstSFI	CTRYAG	2 cut(s)	18, 582
BstUI	CGCG	1 cut(s)	685
BstV1I	GCAGC	1 cut(s)	355
BsuRI	GGCC	2 cut(s)	158, 496
BtgI	CCRYGG	2 cut(s)	141, 491
Cac8I	GCNNGC	2 cut(s)	156, 286
CfoI	GCGC	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	192
Cfr13I	GGNCC	1 cut(s)	548
Cfr9I	CCCGGG	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	293, 681
CspAI	ACCGGT	1 cut(s)	192
CviAII	CATG	3 cut(s)	58, 492, 696
CviQI	GTAC	2 cut(s)	293, 681
DpnI	GATC	2 cut(s)	590, 629
DpnII	GATC	2 cut(s)	588, 627
EaeI	YGGCCR	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	491
Eco24I	GRGCYC	1 cut(s)	487
Eco31I	GGTCTC	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	548
Eco47III	AGCGCT	1 cut(s)	79
Eco88I	CYCGRG	2 cut(s)	94, 221
EcoRI	GAATTC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	491
EcoT38I	GRGCYC	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	491
FaeI	CATG	3 cut(s)	61, 495, 699
FaiI	YATR	7 cut(s)	59, 291, 337, 441, 493, 697, 721
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	3 cut(s)	57, 491, 695
FauI	CCCGC	1 cut(s)	657
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	369
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	2 cut(s)	498, 558
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	1 cut(s)	369
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	2 cut(s)	158, 496
HapII	CCGG	2 cut(s)	95, 193
HhaI	GCGC	1 cut(s)	80
Hin1II	CATG	3 cut(s)	61, 495, 699
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HpaII	CCGG	2 cut(s)	95, 193
HphI	GGTGA	1 cut(s)	96
Hpy166II	GTNNAC	2 cut(s)	28, 184
Hpy188I	TCNGA	2 cut(s)	359, 571
Hpy188III	TCNNGA	2 cut(s)	65, 223
Hpy8I	GTNNAC	2 cut(s)	28, 184
HpyAV	CCTTC	2 cut(s)	388, 653
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	2 cut(s)	433, 672
HpyCH4V	TGCA	2 cut(s)	20, 704
HpyF10VI	GCNNNNNNNGC	5 cut(s)	160, 294, 368, 422, 642
HpySE526I	ACGT	2 cut(s)	433, 672
Hsp92II	CATG	3 cut(s)	61, 495, 699
HspAI	GCGC	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	588, 627
LmnI	GCTCC	2 cut(s)	359, 490
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	2 cut(s)	328, 355
MaeI	CTAG	2 cut(s)	498, 558
MaeII	ACGT	2 cut(s)	433, 672
MaeIII	GTNAC	3 cut(s)	102, 382, 538
MalI	GATC	2 cut(s)	590, 629
MboI	GATC	2 cut(s)	588, 627
MhlI	GDGCHC	3 cut(s)	427, 487, 515
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	6 cut(s)	247, 403, 474, 516, 553, 603
MluNI	TGGCCA	1 cut(s)	158
MmeI	TCCRAC	3 cut(s)	213, 258, 337
MnlI	CCTC	8 cut(s)	4, 120, 274, 336, 498, 635, 659, 702
Mox20I	TGGCCA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	3 cut(s)	200, 447, 599
Msp20I	TGGCCA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	2 cut(s)	95, 193
MspR9I	CCNGG	3 cut(s)	95, 96, 459
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	685
MwoI	GCNNNNNNNGC	5 cut(s)	160, 294, 368, 422, 642
NciI	CCSGG	2 cut(s)	95, 96
NcoI	CCATGG	1 cut(s)	491
NdeII	GATC	2 cut(s)	588, 627
NlaIII	CATG	3 cut(s)	61, 495, 699
NlaIV	GGNNCC	3 cut(s)	345, 399, 486
NmeAIII	GCCGAG	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	102
NspV	TTCGAA	1 cut(s)	392
Pfl23II	CGTACG	1 cut(s)	680
PinAI	ACCGGT	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PspLI	CGTACG	1 cut(s)	680
PspN4I	GGNNCC	3 cut(s)	345, 399, 486
PspPI	GGNCC	1 cut(s)	548
PstI	CTGCAG	1 cut(s)	22
PvuII	CAGCTG	1 cut(s)	154
RsaI	GTAC	2 cut(s)	294, 682
RsaNI	GTAC	2 cut(s)	293, 681
SaqAI	TTAA	3 cut(s)	200, 447, 599
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	2 cut(s)	588, 627
Sau96I	GGNCC	1 cut(s)	548
ScrFI	CCNGG	3 cut(s)	95, 96, 459
SduI	GDGCHC	3 cut(s)	427, 487, 515
SfaNI	GCATC	2 cut(s)	328, 355
SfcI	CTRYAG	2 cut(s)	18, 582
SfuI	TTCGAA	1 cut(s)	392
SinI	GGWCC	1 cut(s)	548
SmaI	CCCGGG	1 cut(s)	96
SmlI	CTYRAG	2 cut(s)	63, 314
SmoI	CTYRAG	2 cut(s)	63, 314
Sse9I	AATT	6 cut(s)	247, 403, 474, 516, 553, 603
SsiI	CCGC	4 cut(s)	8, 172, 650, 685
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	2 cut(s)	498, 558
StyD4I	CCNGG	3 cut(s)	93, 94, 457
StyI	CCWWGG	1 cut(s)	491
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	2 cut(s)	436, 675
TaqI	TCGA	3 cut(s)	392, 591, 664
TasI	AATT	6 cut(s)	247, 403, 474, 516, 553, 603
Tru1I	TTAA	3 cut(s)	200, 447, 599
Tru9I	TTAA	3 cut(s)	200, 447, 599
TseFI	GTSAC	1 cut(s)	102
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	102
TspDTI	ATGAA	1 cut(s)	149
TspMI	CCCGGG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	3 cut(s)	247, 403, 474
XmaI	CCCGGG	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	2 cut(s)	498, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.