Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006192

Physical Location & Seq

Genomic Coordinates Forward (+)

18426423 .. 18428914

Gene Structure 2492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19910.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTTAGGAACAGGATGTAAAGATGAGGGCCCACAAATGCAAGCGTTGAGGAGGATAGCGGAGTGGATCCCACGACTTCAAAATTCTGGACCAGAGGAGGAGAGATGGAGGGAGGGAGGGGAGAGAGAGAGAGAGAAATGGACGAAGAAATGGTGGAGTTCGCGAGGGAGGCTTTCGAGGGGGATGAAATTGACATGGACTACGAATTCGATGCGCCAAAGTTCTACGACTTCACTAGGCCGGAATCCGATTGGGAGGCCGAGGAGGCGGAGGAATGGTTCCGGTCAGCCGGAGGCTATCAGCCCTCCCTACATGAAATTGTATCTTACCGTTATGCTTTATGTTCATGTTTCAACACGATTAGAGTTTTCTAATCACATGGCTCAAGACACTCCGAAAACCAAACTGAAGTCCCCGGGTAAGTCACCACATCTATCAAGGAGTTCAACGTTAATGAAACCCACGGCGAGTCAGTTGGCAAAGCAAAACCACCACCGAGAGGTTCACTCCAATCGGTTATTAAGGAGAGTTGCGAAAAAGCTCGGGAAACTTTATGAGAAATCACAGAATTCTCCGCCACCTACGAAAAGGCAGAAGTTGGAGGCTGGCTATGTACGCAAGGTCGGAGCTGATGCTGCTAGACCTAAAGTTACAGTGCCGAAAGAACCAAACCTGGAAACAGCAAATCGAGCACAAAGACGTAGGTACAAGTGCAATGCCAAACCAGGAGAACAATCTAAAATTCACAGGGCTCCTCCATGGCCTAGCCCGAAAAAGAGCACAATACCAGCAGCAGAGTTTCAGGTAATCATAAAACGTTGTAATGTATTTCTTTGGTGTCTTTGCAAAGGAGAGAAACTTCGACAAAGCTGCCCTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2_importin

Protein Analysis

294

Amino Acids

33.65

Weight (kDa)

10.8

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07170 AT5G07170 AT5G62240
fragaria_vesca	FvH4_7g28280 FvH4_7g28280 FvH4_7g28280 FvH4_7g28280
malus_domestica	MD01G1187200.v1.1 MD07G1259000.v1.1 MD07G1259100.v1.1 MD07G1259400.v1.1
prunus_persica	Prupe.2G283500_v2.0.a1
pyrus_communis	pycom01g19910 pycom07g23180 pycom07g23190
rosa_chinensis	RchiOBHm_Chr1g0375251 RchiOBHm_Chr3g0465611
rosa_laevigata	RLG00000026674
rosa_multiflora	Rmu_sc0000554.1_g000033
rosa_roxburghii	Rroxscaffold_4G00282900
rosa_rugosa	Rorug01G0389400 Rorug01G0389500
rosa_samantha	Rh1AG400200 Rh1BG364200 Rh1CG377400 Rh1DG394800
rosa_wichuraiana	Rw1G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	163
AciI	CCGC	3 cut(s)	59, 268, 575
AclI	AACGTT	2 cut(s)	449, 817
AclWI	GGATC	2 cut(s)	61, 74
AcsI	RAATTY	4 cut(s)	82, 205, 568, 741
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	2 cut(s)	615, 707
AfiI	CCNNNNNNNGG	1 cut(s)	499
AgsI	TTSAA	3 cut(s)	80, 354, 447
AjnI	CCWGG	2 cut(s)	672, 724
AloI	GAACNNNNNNTCC	2 cut(s)	262, 294
AluBI	AGCT	3 cut(s)	541, 629, 870
AluI	AGCT	3 cut(s)	541, 629, 870
Alw21I	GWGCWC	2 cut(s)	694, 782
AlwI	GGATC	2 cut(s)	61, 74
Ama87I	CYCGRG	2 cut(s)	415, 542
AoxI	GGCC	4 cut(s)	28, 238, 257, 761
ApaI	GGGCCC	1 cut(s)	32
ApeKI	GCWGC	3 cut(s)	635, 791, 870
ApoI	RAATTY	4 cut(s)	82, 205, 568, 741
ArsI	GACNNNNNNTTYG	2 cut(s)	190, 222
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	3 cut(s)	28, 29, 89
AsuC2I	CCSGG	2 cut(s)	416, 417
AsuHPI	GGTGA	1 cut(s)	417
AvaI	CYCGRG	2 cut(s)	415, 542
AvaII	GGWCC	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	32
BamHI	GGATCC	1 cut(s)	66
BanII	GRGCYC	2 cut(s)	32, 754
Bbv12I	GWGCWC	2 cut(s)	694, 782
BbvI	GCAGC	3 cut(s)	622, 803, 857
BccI	CCATC	1 cut(s)	99
BceAI	ACGGC	1 cut(s)	480
BcgI	CGANNNNNNTGC	3 cut(s)	193, 227, 852
BciT130I	CCWGG	2 cut(s)	674, 726
BcnI	CCSGG	2 cut(s)	416, 417
BfaI	CTAG	3 cut(s)	236, 639, 765
BglI	GCCNNNNNGGC	1 cut(s)	265
BisI	GCNGC	3 cut(s)	636, 792, 871
BlsI	GCNGC	3 cut(s)	637, 793, 872
Bme1390I	CCNGG	4 cut(s)	416, 417, 674, 726
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	2 cut(s)	415, 542
BmgT120I	GGNCC	3 cut(s)	28, 29, 89
BmiI	GGNNCC	4 cut(s)	30, 68, 280, 753
BmrFI	CCNGG	4 cut(s)	416, 417, 674, 726
BmsI	GCATC	2 cut(s)	201, 622
BplI	GAGNNNNNCTC	2 cut(s)	491, 523
BpuEI	CTTGAG	1 cut(s)	369
BpuMI	CCSGG	2 cut(s)	416, 417
BsaJI	CCNNGG	5 cut(s)	260, 414, 415, 462, 758
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	262, 292
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
Bse3DI	GCAATG	1 cut(s)	721
BseBI	CCWGG	2 cut(s)	674, 726
BseDI	CCNNGG	5 cut(s)	260, 414, 415, 462, 758
BseGI	GGATG	2 cut(s)	20, 189
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseMI	GCAATG	1 cut(s)	721
BseRI	GAGGAG	5 cut(s)	64, 110, 113, 277, 744
BseSI	GKGCMC	1 cut(s)	32
BseXI	GCAGC	3 cut(s)	622, 803, 857
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	4 cut(s)	30, 240, 259, 763
BsiHKAI	GWGCWC	2 cut(s)	694, 782
BsiHKCI	CYCGRG	2 cut(s)	415, 542
BsiSI	CCGG	4 cut(s)	241, 282, 290, 416
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	1 cut(s)	499
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	4 cut(s)	30, 240, 259, 763
BsoBI	CYCGRG	2 cut(s)	415, 542
Bsp120I	GGGCCC	1 cut(s)	28
Bsp1286I	GDGCHC	4 cut(s)	32, 694, 754, 782
Bsp143I	GATC	1 cut(s)	66
Bsp19I	CCATGG	1 cut(s)	758
Bsp68I	TCGCGA	1 cut(s)	163
BspACI	CCGC	3 cut(s)	59, 268, 575
BspANI	GGCC	4 cut(s)	30, 240, 259, 763
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	4 cut(s)	30, 68, 280, 753
BspPI	GGATC	2 cut(s)	61, 74
BsrDI	GCAATG	1 cut(s)	721
BssECI	CCNNGG	5 cut(s)	260, 414, 415, 462, 758
BssMI	GATC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	758
Bst2UI	CCWGG	2 cut(s)	674, 726
Bst4CI	ACNGT	2 cut(s)	331, 655
BstC8I	GCNNGC	2 cut(s)	42, 607
BstDSI	CCRYGG	2 cut(s)	462, 758
BstF5I	GGATG	2 cut(s)	20, 189
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	5 cut(s)	169, 265, 615, 635, 689
BstNI	CCWGG	2 cut(s)	674, 726
BstSCI	CCNGG	4 cut(s)	414, 415, 672, 724
BstSLI	GKGCMC	1 cut(s)	32
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	3 cut(s)	622, 803, 857
BstX2I	RGATCY	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	66
BsuRI	GGCC	4 cut(s)	30, 240, 259, 763
BtgI	CCRYGG	2 cut(s)	462, 758
BtsCI	GGATG	2 cut(s)	20, 189
BtsIMutI	CAGTG	1 cut(s)	660
BtuMI	TCGCGA	1 cut(s)	163
Cac8I	GCNNGC	2 cut(s)	42, 607
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	3 cut(s)	28, 29, 89
Cfr9I	CCCGGG	1 cut(s)	415
Csp6I	GTAC	2 cut(s)	614, 706
CviAII	CATG	5 cut(s)	195, 313, 347, 379, 759
CviQI	GTAC	2 cut(s)	614, 706
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
EciI	GGCGGA	2 cut(s)	283, 564
Eco130I	CCWWGG	1 cut(s)	758
Eco24I	GRGCYC	2 cut(s)	32, 754
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	428
Eco88I	CYCGRG	2 cut(s)	415, 542
EcoO109I	RGGNCCY	1 cut(s)	28
EcoRI	GAATTC	2 cut(s)	205, 568
EcoRII	CCWGG	2 cut(s)	672, 724
EcoT14I	CCWWGG	1 cut(s)	758
EcoT38I	GRGCYC	2 cut(s)	32, 754
ErhI	CCWWGG	1 cut(s)	758
FaeI	CATG	5 cut(s)	198, 316, 350, 382, 762
FalI	AAGNNNNNCTT	1 cut(s)	859
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	5 cut(s)	194, 312, 346, 378, 758
Fnu4HI	GCNGC	3 cut(s)	636, 792, 871
FokI	GGATG	2 cut(s)	27, 196
FriOI	GRGCYC	2 cut(s)	32, 754
Fsp4HI	GCNGC	3 cut(s)	636, 792, 871
FspBI	CTAG	3 cut(s)	236, 639, 765
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	3 cut(s)	636, 792, 871
HaeIII	GGCC	4 cut(s)	30, 240, 259, 763
HapII	CCGG	4 cut(s)	241, 282, 290, 416
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	5 cut(s)	198, 316, 350, 382, 762
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	244, 469
HpaII	CCGG	4 cut(s)	241, 282, 290, 416
HphI	GGTGA	1 cut(s)	417
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	3 cut(s)	249, 396, 626
Hpy188III	TCNNGA	4 cut(s)	87, 162, 386, 544
Hpy8I	GTNNAC	1 cut(s)	505
HpyCH4III	ACNGT	2 cut(s)	331, 655
HpyCH4IV	ACGT	3 cut(s)	449, 700, 817
HpyCH4V	TGCA	3 cut(s)	40, 714, 846
HpyF10VI	GCNNNNNNNGC	5 cut(s)	169, 265, 615, 635, 689
HpySE526I	ACGT	3 cut(s)	449, 700, 817
Hsp92II	CATG	5 cut(s)	198, 316, 350, 382, 762
HspAI	GCGC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	2 cut(s)	626, 757
Lsp1109I	GCAGC	3 cut(s)	622, 803, 857
LweI	GCATC	2 cut(s)	201, 622
MaeI	CTAG	3 cut(s)	236, 639, 765
MaeII	ACGT	3 cut(s)	449, 700, 817
MaeIII	GTNAC	2 cut(s)	423, 649
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	1 cut(s)	157
MflI	RGATCY	1 cut(s)	66
MhlI	GDGCHC	4 cut(s)	32, 694, 754, 782
MluCI	AATT	6 cut(s)	82, 188, 205, 317, 568, 741
MlyI	GAGTC	1 cut(s)	478
MmeI	TCCRAC	2 cut(s)	579, 604
MseI	TTAA	2 cut(s)	452, 521
MspI	CCGG	4 cut(s)	241, 282, 290, 416
MspR9I	CCNGG	4 cut(s)	416, 417, 674, 726
MvaI	CCWGG	2 cut(s)	674, 726
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	5 cut(s)	169, 265, 615, 635, 689
NciI	CCSGG	2 cut(s)	416, 417
NcoI	CCATGG	1 cut(s)	758
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	5 cut(s)	198, 316, 350, 382, 762
NlaIV	GGNNCC	4 cut(s)	30, 68, 280, 753
NmeAIII	GCCGAG	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	423
NruI	TCGCGA	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	3 cut(s)	637, 793, 872
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
Psp1406I	AACGTT	2 cut(s)	449, 817
Psp6I	CCWGG	2 cut(s)	672, 724
PspGI	CCWGG	2 cut(s)	672, 724
PspN4I	GGNNCC	4 cut(s)	30, 68, 280, 753
PspOMI	GGGCCC	1 cut(s)	28
PspPI	GGNCC	3 cut(s)	28, 29, 89
PsuI	RGATCY	1 cut(s)	66
RruI	TCGCGA	1 cut(s)	163
RsaI	GTAC	2 cut(s)	615, 707
RsaNI	GTAC	2 cut(s)	614, 706
SaqAI	TTAA	2 cut(s)	452, 521
SatI	GCNGC	3 cut(s)	636, 792, 871
Sau3AI	GATC	1 cut(s)	66
Sau96I	GGNCC	3 cut(s)	28, 29, 89
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	4 cut(s)	416, 417, 674, 726
SduI	GDGCHC	4 cut(s)	32, 694, 754, 782
SfaNI	GCATC	2 cut(s)	201, 622
SinI	GGWCC	1 cut(s)	89
SmaI	CCCGGG	1 cut(s)	417
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	6 cut(s)	82, 188, 205, 317, 568, 741
SsiI	CCGC	3 cut(s)	59, 268, 575
SspMI	CTAG	3 cut(s)	236, 639, 765
StyD4I	CCNGG	4 cut(s)	414, 415, 672, 724
StyI	CCWWGG	1 cut(s)	758
TaaI	ACNGT	2 cut(s)	331, 655
TaiI	ACGT	3 cut(s)	452, 703, 820
TaqI	TCGA	4 cut(s)	176, 209, 688, 862
TasI	AATT	6 cut(s)	82, 188, 205, 317, 568, 741
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	2 cut(s)	452, 521
Tru9I	TTAA	2 cut(s)	452, 521
TscAI	CASTG	1 cut(s)	660
TseFI	GTSAC	1 cut(s)	423
TseI	GCWGC	3 cut(s)	635, 791, 870
Tsp45I	GTSAC	1 cut(s)	423
TspDTI	ATGAA	4 cut(s)	200, 329, 335, 470
TspMI	CCCGGG	1 cut(s)	415
TspRI	CASTG	1 cut(s)	660
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	4 cut(s)	82, 205, 568, 741
XmaI	CCCGGG	1 cut(s)	415
XspI	CTAG	3 cut(s)	236, 639, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.