pycom07g23190

Cell cycle regulated microtubule associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0006192
Physical Location & Seq
Forward (+)
24210463 .. 24210840
378 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g23190.2

Sequence Viewer

Length: 231 bp
ATGGAAGCGGAGGTCTCTGCAGTAGTAGACGATAATATTAGAGAACTCCCTAATCACATGGCTCAAGACACTGCAAGCGCTAAACCAAAGTCCCCGGGCAAGTCACCACCTCTATCAAGGAGTTCAACGTTAATGAAACCCACGGCAAGTCAGCTGGCCAAGCAAAATAACTGCCGAGAAGTTCACTCCAACCGGTTACAAGGAGGTGCTAATTTTTTTTGTCTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2_importin

Protein Analysis

77

Amino Acids

8.17

Weight (kDa)

8.77

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 27
AciI CCGC 1 cut(s) 8
AclI AACGTT 1 cut(s) 128
AcoI YGGCCR 1 cut(s) 156
AfeI AGCGCT 1 cut(s) 79
AgeI ACCGGT 1 cut(s) 192
AgsI TTSAA 1 cut(s) 126
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw26I GTCTC 2 cut(s) 19, 227
Ama87I CYCGRG 1 cut(s) 94
Aor51HI AGCGCT 1 cut(s) 79
AoxI GGCC 1 cut(s) 156
AsiGI ACCGGT 1 cut(s) 192
AspLEI GCGC 1 cut(s) 80
AsuC2I CCSGG 2 cut(s) 95, 96
AsuHPI GGTGA 1 cut(s) 96
AvaI CYCGRG 1 cut(s) 94
BalI TGGCCA 1 cut(s) 158
BceAI ACGGC 1 cut(s) 159
BcnI CCSGG 2 cut(s) 95, 96
BcoDI GTCTC 2 cut(s) 19, 227
BfmI CTRYAG 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 81
Bme1390I CCNGG 2 cut(s) 95, 96
BmeT110I CYCGRG 1 cut(s) 94
BmrFI CCNGG 2 cut(s) 95, 96
BpuEI CTTGAG 1 cut(s) 48
BpuMI CCSGG 2 cut(s) 95, 96
BsaI GGTCTC 1 cut(s) 19
BsaJI CCNNGG 3 cut(s) 93, 94, 141
BsaWI WCCGGW 1 cut(s) 192
Bse118I RCCGGY 1 cut(s) 192
BseDI CCNNGG 3 cut(s) 93, 94, 141
BshFI GGCC 1 cut(s) 158
BshTI ACCGGT 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 94
BsiSI CCGG 2 cut(s) 95, 193
BslFI GGGAC 1 cut(s) 76
BsmAI GTCTC 2 cut(s) 19, 227
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 1 cut(s) 158
Bso31I GGTCTC 1 cut(s) 19
BsoBI CYCGRG 1 cut(s) 94
BspACI CCGC 1 cut(s) 8
BspANI GGCC 1 cut(s) 158
BspMAI CTGCAG 1 cut(s) 22
BspTNI GGTCTC 1 cut(s) 19
BsrFI RCCGGY 1 cut(s) 192
BssAI RCCGGY 1 cut(s) 192
BssECI CCNNGG 3 cut(s) 93, 94, 141
BstC8I GCNNGC 2 cut(s) 76, 156
BstDSI CCRYGG 1 cut(s) 141
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstMAI GTCTC 2 cut(s) 19, 227
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstSCI CCNGG 2 cut(s) 93, 94
BstSFI CTRYAG 1 cut(s) 18
BsuRI GGCC 1 cut(s) 158
BtgI CCRYGG 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 1 cut(s) 69
Cac8I GCNNGC 2 cut(s) 76, 156
CfoI GCGC 1 cut(s) 80
Cfr10I RCCGGY 1 cut(s) 192
Cfr9I CCCGGG 1 cut(s) 94
CspAI ACCGGT 1 cut(s) 192
CviAII CATG 1 cut(s) 58
CviJI RGCY 3 cut(s) 62, 154, 158
CviKI_1 RGCY 3 cut(s) 62, 154, 158
EaeI YGGCCR 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 19
Eco47III AGCGCT 1 cut(s) 79
Eco88I CYCGRG 1 cut(s) 94
FaeI CATG 1 cut(s) 61
FaiI YATR 1 cut(s) 59
FaqI GGGAC 1 cut(s) 76
FatI CATG 1 cut(s) 57
FblI GTMKAC 1 cut(s) 27
GlaI GCGC 1 cut(s) 79
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 1 cut(s) 158
HapII CCGG 2 cut(s) 95, 193
HhaI GCGC 1 cut(s) 80
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HpaII CCGG 2 cut(s) 95, 193
HphI GGTGA 1 cut(s) 96
Hpy166II GTNNAC 2 cut(s) 28, 184
Hpy188I TCNGA 1 cut(s) 227
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 2 cut(s) 28, 184
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 2 cut(s) 20, 74
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 128
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 1 cut(s) 78
LpnPI CCDG 3 cut(s) 108, 140, 206
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 2 cut(s) 102, 195
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 1 cut(s) 211
MluNI TGGCCA 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 3 cut(s) 4, 120, 197
Mox20I TGGCCA 1 cut(s) 158
MscI TGGCCA 1 cut(s) 158
MseI TTAA 1 cut(s) 131
Msp20I TGGCCA 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 154
MspI CCGG 2 cut(s) 95, 193
MspR9I CCNGG 2 cut(s) 95, 96
MwoI GCNNNNNNNGC 1 cut(s) 160
NciI CCSGG 2 cut(s) 95, 96
NlaIII CATG 1 cut(s) 61
NmeAIII GCCGAG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 102
PinAI ACCGGT 1 cut(s) 192
Psp1406I AACGTT 1 cut(s) 128
PstI CTGCAG 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 154
SaqAI TTAA 1 cut(s) 131
ScrFI CCNGG 2 cut(s) 95, 96
SetI ASST 5 cut(s) 15, 112, 131, 156, 208
SfcI CTRYAG 1 cut(s) 18
SmaI CCCGGG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
Sse9I AATT 1 cut(s) 211
SsiI CCGC 1 cut(s) 8
SspI AATATT 1 cut(s) 37
StyD4I CCNGG 2 cut(s) 93, 94
TaiI ACGT 1 cut(s) 131
TasI AATT 1 cut(s) 211
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TscAI CASTG 1 cut(s) 76
TseFI GTSAC 1 cut(s) 102
Tsp45I GTSAC 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 149
TspMI CCCGGG 1 cut(s) 94
TspRI CASTG 1 cut(s) 76
XmaI CCCGGG 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.