MD01G1187200.v1.1

Cell cycle regulated microtubule associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0006192
Physical Location & Seq
Forward (+)
28590054 .. 28593736
3683 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1187200.v1.1.491

Sequence Viewer

Length: 1164 bp
ATGGAGGGAGGGGAGAGAGAGATGGACGAAGAAATGGTGGAGTTCGCGAGGGAGGCTTTTGAGGGGGATGAAATTGACATGGACTACGAATTCGATGCGCCCAAGTTCTACGACTTCACTAGGCCGGAATCCGATTGGGAGGCCGAGGAGGCGGAGGAATGGTTCCGGTCAGCCGGAGGCTATCAGCCCTCGCCTTTCCTTGAAAAATTGTTGAATTGGCAAAAAGAGAATCATCCGGAACCTGTAAAAACCTTCGTGGAATCGAAAGATGTTGAAGTTACTAGATGCAGTAACCCGAATAATTGCTTGGAAGCGGAGGTCTCTGCAGCGGTAGACGATAATGACAAAAAGTTTTCTAATCACATGGCTCAAGACACTCCAAAAGCTAAACTGAAGTCCCCGGGCAAGTCACCACATCTCTCAAGGAGTTCAACGTTAATGAAACCCACGGCGAGTCAGTTGGCCAAGCAAAATCACCACCGAGCGGTTCACTCCAATCGATTATTAAGGAGAGTCGCGAAAAAGCTCGGGAAACTTGATGAGAAATCACAGAATTCTCCGCCACCTACGAAAAGGCAGAAGTTGGAGGCTGGCTATGTACGCAAGGTTGCTGAACAACTCAAGCATCAACCTCTCTGGTTACATAAGGCGGCAAAAAAGGTCGGAGCTGATGCTGCTAGACCTAAAGTTACAGTTCCGAAAGAACCAAATCTTGAAACAGCAAATCGAGCACGAAGACGTAGGTACAAGGTTAACACCAAACCAGGAGAACAATCAAAAATTCATAGGGCTCCTCCATGGCCTAGCCCGAAAAAGAGCACAATTCCAGCAACAGAGTTTCAGGTGTTCCGCCTTCGGACATCAGCGCGAGCTATGCAACAGACATTTAATCACCAGGTAACAAATGGACCCGACTCTAGTTATTTATCAGAAAATGAAGCTACAGAGATCAAAGGGCCAAACTCTGTGTATGCCTTAAAGCAAGAGAAAGGTCAAATGATATATAAGTGCGTAGCTTGCTCTCTTAAAAATAAGGAATTGAAGTTTGCAATCGACAAGAGATGCCTAAAGGAGCCACCAACAGATTTATTTAGTAAGCTCTCCCTTGCATCCGATGCACAGCATAATACAAAACCCCAGTCAAAAAGTGCCTTTGCCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPX2_importin

Protein Analysis

388

Amino Acids

43.99

Weight (kDa)

9.22

Isoelectric Point (pI)

50.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2_importin PF12214 229 - 301 1.7e-10 Cell cycle regulated microtubule associated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 485
AccI GTMKAC 1 cut(s) 333
AccII CGCG 3 cut(s) 47, 518, 868
AccIII TCCGGA 1 cut(s) 235
AciI CCGC 7 cut(s) 152, 314, 329, 485, 560, 650, 850
AclI AACGTT 1 cut(s) 434
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 3 cut(s) 89, 553, 780
AcuI CTGAAG 1 cut(s) 413
AfaI GTAC 2 cut(s) 600, 746
AfiI CCNNNNNNNGG 1 cut(s) 484
AgsI TTSAA 6 cut(s) 203, 214, 275, 432, 716, 1042
AjnI CCWGG 2 cut(s) 763, 894
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AloI GAACNNNNNNTCC 2 cut(s) 146, 178
AluBI AGCT 7 cut(s) 386, 526, 668, 872, 941, 1016, 1099
AluI AGCT 7 cut(s) 386, 526, 668, 872, 941, 1016, 1099
Alw21I GWGCWC 2 cut(s) 733, 821
Alw26I GTCTC 1 cut(s) 325
Ama87I CYCGRG 2 cut(s) 400, 527
Aor13HI TCCGGA 1 cut(s) 235
AoxI GGCC 5 cut(s) 122, 141, 462, 800, 956
ApeKI GCWGC 2 cut(s) 326, 674
ApoI RAATTY 3 cut(s) 89, 553, 780
ArsI GACNNNNNNTTYG 4 cut(s) 74, 106, 1124, 1156
AspLEI GCGC 2 cut(s) 100, 868
AspS9I GGNCC 2 cut(s) 908, 956
AsuC2I CCSGG 2 cut(s) 401, 402
AsuHPI GGTGA 3 cut(s) 402, 467, 884
AvaI CYCGRG 2 cut(s) 400, 527
AvaII GGWCC 1 cut(s) 908
BalI TGGCCA 1 cut(s) 464
BanII GRGCYC 1 cut(s) 793
BbsI GAAGAC 1 cut(s) 742
Bbv12I GWGCWC 2 cut(s) 733, 821
BbvI GCAGC 2 cut(s) 338, 661
BccI CCATC 1 cut(s) 16
BceAI ACGGC 1 cut(s) 465
BcgI CGANNNNNNTGC 2 cut(s) 77, 111
BciT130I CCWGG 2 cut(s) 765, 896
BcnI CCSGG 2 cut(s) 401, 402
BcoDI GTCTC 1 cut(s) 325
BfaI CTAG 5 cut(s) 120, 282, 678, 804, 918
BfmI CTRYAG 2 cut(s) 324, 942
BglI GCCNNNNNGGC 1 cut(s) 149
BisI GCNGC 3 cut(s) 327, 651, 675
BlsI GCNGC 3 cut(s) 328, 652, 676
Bme1390I CCNGG 4 cut(s) 401, 402, 765, 896
Bme18I GGWCC 1 cut(s) 908
BmeT110I CYCGRG 2 cut(s) 400, 527
BmgT120I GGNCC 2 cut(s) 908, 956
BmiI GGNNCC 5 cut(s) 164, 240, 792, 910, 1074
BmrFI CCNGG 4 cut(s) 401, 402, 765, 896
BmrI ACTGGG 1 cut(s) 1132
BmsI GCATC 7 cut(s) 85, 275, 634, 661, 1052, 1105, 1118
BmuI ACTGGG 1 cut(s) 1132
BpiI GAAGAC 1 cut(s) 742
BpuEI CTTGAG 3 cut(s) 354, 406, 605
BpuMI CCSGG 2 cut(s) 401, 402
Bsa29I ATCGAT 1 cut(s) 499
BsaI GGTCTC 1 cut(s) 325
BsaJI CCNNGG 5 cut(s) 144, 399, 400, 447, 797
BsaWI WCCGGW 2 cut(s) 165, 235
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse1I ACTGG 1 cut(s) 1138
BseAI TCCGGA 1 cut(s) 235
BseBI CCWGG 2 cut(s) 765, 896
BseCI ATCGAT 1 cut(s) 499
BseDI CCNNGG 5 cut(s) 144, 399, 400, 447, 797
BseGI GGATG 3 cut(s) 73, 232, 1109
BseLI CCNNNNNNNGG 1 cut(s) 484
BseNI ACTGG 1 cut(s) 1138
BseRI GAGGAG 2 cut(s) 161, 783
BseXI GCAGC 2 cut(s) 338, 661
Bsh1236I CGCG 3 cut(s) 47, 518, 868
BshFI GGCC 5 cut(s) 124, 143, 464, 802, 958
BshVI ATCGAT 1 cut(s) 499
BsiHKAI GWGCWC 2 cut(s) 733, 821
BsiHKCI CYCGRG 2 cut(s) 400, 527
BsiSI CCGG 5 cut(s) 125, 166, 174, 236, 401
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 1 cut(s) 325
BsmFI GGGAC 1 cut(s) 382
BsnI GGCC 5 cut(s) 124, 143, 464, 802, 958
Bso31I GGTCTC 1 cut(s) 325
BsoBI CYCGRG 2 cut(s) 400, 527
Bsp1286I GDGCHC 3 cut(s) 733, 793, 821
Bsp13I TCCGGA 1 cut(s) 235
Bsp143I GATC 1 cut(s) 948
Bsp19I CCATGG 1 cut(s) 797
Bsp68I TCGCGA 2 cut(s) 47, 518
BspACI CCGC 7 cut(s) 152, 314, 329, 485, 560, 650, 850
BspANI GGCC 5 cut(s) 124, 143, 464, 802, 958
BspDI ATCGAT 1 cut(s) 499
BspEI TCCGGA 1 cut(s) 235
BspFNI CGCG 3 cut(s) 47, 518, 868
BspLI GGNNCC 5 cut(s) 164, 240, 792, 910, 1074
BspMAI CTGCAG 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 325
BsrBI CCGCTC 1 cut(s) 485
BsrI ACTGG 1 cut(s) 1138
BssECI CCNNGG 5 cut(s) 144, 399, 400, 447, 797
BssMI GATC 1 cut(s) 948
BssT1I CCWWGG 1 cut(s) 797
Bst2UI CCWGG 2 cut(s) 765, 896
Bst4CI ACNGT 1 cut(s) 694
BstAPI GCANNNNNTGC 1 cut(s) 1115
BstC8I GCNNGC 4 cut(s) 592, 870, 1018, 1159
BstDSI CCRYGG 2 cut(s) 447, 797
BstF5I GGATG 3 cut(s) 73, 232, 1109
BstFNI CGCG 3 cut(s) 47, 518, 868
BstHHI GCGC 2 cut(s) 100, 868
BstKTI GATC 1 cut(s) 951
BstMAI GTCTC 1 cut(s) 325
BstMBI GATC 1 cut(s) 948
BstMWI GCNNNNNNNGC 8 cut(s) 53, 149, 600, 674, 728, 874, 1017, 1115
BstNI CCWGG 2 cut(s) 765, 896
BstSCI CCNGG 4 cut(s) 399, 400, 763, 894
BstSFI CTRYAG 2 cut(s) 324, 942
BstUI CGCG 3 cut(s) 47, 518, 868
BstV1I GCAGC 2 cut(s) 338, 661
BstV2I GAAGAC 1 cut(s) 742
Bsu15I ATCGAT 1 cut(s) 499
BsuRI GGCC 5 cut(s) 124, 143, 464, 802, 958
BsuTUI ATCGAT 1 cut(s) 499
BtgI CCRYGG 2 cut(s) 447, 797
BtsCI GGATG 3 cut(s) 73, 232, 1109
BtuMI TCGCGA 2 cut(s) 47, 518
Cac8I GCNNGC 4 cut(s) 592, 870, 1018, 1159
CfoI GCGC 2 cut(s) 100, 868
Cfr13I GGNCC 2 cut(s) 908, 956
Cfr9I CCCGGG 1 cut(s) 400
ClaI ATCGAT 1 cut(s) 499
CsiI ACCWGGT 1 cut(s) 894
Csp6I GTAC 2 cut(s) 599, 745
CviAII CATG 3 cut(s) 79, 364, 798
CviQI GTAC 2 cut(s) 599, 745
DpnI GATC 1 cut(s) 950
DpnII GATC 1 cut(s) 948
EaeI YGGCCR 1 cut(s) 462
EciI GGCGGA 3 cut(s) 167, 549, 839
Eco130I CCWWGG 1 cut(s) 797
Eco24I GRGCYC 1 cut(s) 793
Eco31I GGTCTC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 908
Eco57I CTGAAG 1 cut(s) 413
Eco88I CYCGRG 2 cut(s) 400, 527
EcoRI GAATTC 2 cut(s) 89, 553
EcoRII CCWGG 2 cut(s) 763, 894
EcoT14I CCWWGG 1 cut(s) 797
EcoT38I GRGCYC 1 cut(s) 793
ErhI CCWWGG 1 cut(s) 797
FaeI CATG 3 cut(s) 82, 367, 801
FaqI GGGAC 1 cut(s) 382
FatI CATG 3 cut(s) 78, 363, 797
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 3 cut(s) 327, 651, 675
FokI GGATG 3 cut(s) 80, 219, 1096
FriOI GRGCYC 1 cut(s) 793
Fsp4HI GCNGC 3 cut(s) 327, 651, 675
FspBI CTAG 5 cut(s) 120, 282, 678, 804, 918
GlaI GCGC 2 cut(s) 99, 867
GluI GCNGC 3 cut(s) 327, 651, 675
HaeIII GGCC 5 cut(s) 124, 143, 464, 802, 958
HapII CCGG 5 cut(s) 125, 166, 174, 236, 401
HhaI GCGC 2 cut(s) 100, 868
Hin1II CATG 3 cut(s) 82, 367, 801
Hin6I GCGC 2 cut(s) 98, 866
HinP1I GCGC 2 cut(s) 98, 866
HincII GTYRAC 1 cut(s) 754
HindII GTYRAC 1 cut(s) 754
HinfI GANTC 6 cut(s) 128, 229, 260, 454, 513, 914
HpaI GTTAAC 1 cut(s) 754
HpaII CCGG 5 cut(s) 125, 166, 174, 236, 401
HphI GGTGA 3 cut(s) 402, 467, 884
Hpy166II GTNNAC 3 cut(s) 334, 490, 754
Hpy188I TCNGA 6 cut(s) 133, 665, 699, 858, 931, 1114
Hpy188III TCNNGA 6 cut(s) 46, 236, 371, 517, 529, 713
Hpy8I GTNNAC 3 cut(s) 334, 490, 754
HpyAV CCTTC 2 cut(s) 262, 863
HpyCH4III ACNGT 1 cut(s) 694
HpyCH4IV ACGT 2 cut(s) 434, 739
HpyCH4V TGCA 6 cut(s) 288, 326, 877, 1049, 1109, 1118
HpyF10VI GCNNNNNNNGC 8 cut(s) 53, 149, 600, 674, 728, 874, 1017, 1115
HpySE526I ACGT 2 cut(s) 434, 739
Hsp92II CATG 3 cut(s) 82, 367, 801
HspAI GCGC 2 cut(s) 98, 866
Kpn2I TCCGGA 1 cut(s) 235
KspAI GTTAAC 1 cut(s) 754
Kzo9I GATC 1 cut(s) 948
LmnI GCTCC 3 cut(s) 665, 796, 1072
Lsp1109I GCAGC 2 cut(s) 338, 661
LweI GCATC 7 cut(s) 85, 275, 634, 661, 1052, 1105, 1118
MabI ACCWGGT 1 cut(s) 894
MaeI CTAG 5 cut(s) 120, 282, 678, 804, 918
MaeII ACGT 2 cut(s) 434, 739
MaeIII GTNAC 6 cut(s) 277, 290, 408, 639, 688, 898
MalI GATC 1 cut(s) 950
MbiI CCGCTC 1 cut(s) 485
MboI GATC 1 cut(s) 948
MboII GAAGA 2 cut(s) 41, 747
MhlI GDGCHC 3 cut(s) 733, 793, 821
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 9 cut(s) 72, 89, 206, 214, 301, 553, 780, 822, 1037
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 3 cut(s) 463, 522, 908
MmeI TCCRAC 2 cut(s) 564, 643
Mox20I TGGCCA 1 cut(s) 464
MroI TCCGGA 1 cut(s) 235
MscI TGGCCA 1 cut(s) 464
MseI TTAA 6 cut(s) 437, 506, 753, 888, 977, 1026
Msp20I TGGCCA 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 5 cut(s) 125, 166, 174, 236, 401
MspR9I CCNGG 4 cut(s) 401, 402, 765, 896
MvaI CCWGG 2 cut(s) 765, 896
MvnI CGCG 3 cut(s) 47, 518, 868
MwoI GCNNNNNNNGC 8 cut(s) 53, 149, 600, 674, 728, 874, 1017, 1115
NciI CCSGG 2 cut(s) 401, 402
NcoI CCATGG 1 cut(s) 797
NdeII GATC 1 cut(s) 948
NlaIII CATG 3 cut(s) 82, 367, 801
NlaIV GGNNCC 5 cut(s) 164, 240, 792, 910, 1074
NmeAIII GCCGAG 1 cut(s) 169
NmuCI GTSAC 1 cut(s) 408
NruI TCGCGA 2 cut(s) 47, 518
PfeI GAWTC 3 cut(s) 128, 229, 260
PkrI GCNGC 3 cut(s) 328, 652, 676
PleI GAGTC 3 cut(s) 462, 521, 908
PpsI GAGTC 3 cut(s) 462, 521, 908
Psp1406I AACGTT 1 cut(s) 434
Psp6I CCWGG 2 cut(s) 763, 894
PspGI CCWGG 2 cut(s) 763, 894
PspN4I GGNNCC 5 cut(s) 164, 240, 792, 910, 1074
PspPI GGNCC 2 cut(s) 908, 956
PstI CTGCAG 1 cut(s) 328
RruI TCGCGA 2 cut(s) 47, 518
RsaI GTAC 2 cut(s) 600, 746
RsaNI GTAC 2 cut(s) 599, 745
SaqAI TTAA 6 cut(s) 437, 506, 753, 888, 977, 1026
SatI GCNGC 3 cut(s) 327, 651, 675
Sau3AI GATC 1 cut(s) 948
Sau96I GGNCC 2 cut(s) 908, 956
SchI GAGTC 3 cut(s) 463, 522, 908
ScrFI CCNGG 4 cut(s) 401, 402, 765, 896
SduI GDGCHC 3 cut(s) 733, 793, 821
SexAI ACCWGGT 1 cut(s) 894
SfaNI GCATC 7 cut(s) 85, 275, 634, 661, 1052, 1105, 1118
SfcI CTRYAG 2 cut(s) 324, 942
SinI GGWCC 1 cut(s) 908
SmaI CCCGGG 1 cut(s) 402
SmlI CTYRAG 3 cut(s) 369, 421, 620
SmoI CTYRAG 3 cut(s) 369, 421, 620
Sse9I AATT 9 cut(s) 72, 89, 206, 214, 301, 553, 780, 822, 1037
SsiI CCGC 7 cut(s) 152, 314, 329, 485, 560, 650, 850
SspMI CTAG 5 cut(s) 120, 282, 678, 804, 918
StyD4I CCNGG 4 cut(s) 399, 400, 763, 894
StyI CCWWGG 1 cut(s) 797
TaaI ACNGT 1 cut(s) 694
TaiI ACGT 2 cut(s) 437, 742
TaqI TCGA 5 cut(s) 93, 263, 499, 727, 1053
TasI AATT 9 cut(s) 72, 89, 206, 214, 301, 553, 780, 822, 1037
TauI GCSGC 1 cut(s) 653
TfiI GAWTC 3 cut(s) 128, 229, 260
Tru1I TTAA 6 cut(s) 437, 506, 753, 888, 977, 1026
Tru9I TTAA 6 cut(s) 437, 506, 753, 888, 977, 1026
TseFI GTSAC 1 cut(s) 408
TseI GCWGC 2 cut(s) 326, 674
Tsp45I GTSAC 1 cut(s) 408
TspDTI ATGAA 4 cut(s) 84, 455, 773, 951
TspMI CCCGGG 1 cut(s) 400
VpaK11BI GGWCC 1 cut(s) 908
XapI RAATTY 3 cut(s) 89, 553, 780
XcmI CCANNNNNNNNNTGG 1 cut(s) 902
XmaI CCCGGG 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 333
XspI CTAG 5 cut(s) 120, 282, 678, 804, 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.