Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0006192

Physical Location & Seq

Genomic Coordinates Forward (+)

32565190 .. 32566602

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1259400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGACGAAGAAATGGTGGAGTTCGTTAGGGAGGCTTTCGAGGGGGGAGAAATTGACATGGACCATGAATTTGATGCGCCCAAGTTCTATGATTTCACCCAGCCGGAGACTGGTCGGGAGGCCGAGGAGGCGGAGGAATGGTTCCTGTCAGCAGGAGATTATCAGCCCTCGCCTTTCCTTGAAAAATTGTTGAATTGGCAAAAAGGGATTCATCCGGAACCTGTAAAAAACTCCGCCGAACCAAAAGACGTTGAAGAAGTTGAAGTTATCAGCTGTATTGACTCAAATAATTGCATGGAAGCGGAGGTCTCTGTAGTAGTAGACGATAATATTAGAGAACTCCCTATTCACATGGCTCAAGACACTCCAAGCGCTAAACCAAAGTCCCCGGGCAAGTCACCACCTCTATCAAGGAGTTCAACGCTAACGAAACCCACGGCAAGTCAGCTGACCAAGCAAAATCACCACCGAGAAGTTCACTCCAACCAGTTATTACGGAGAGTGGCGAAAAAGCTCGGGAAACTTGATAAGAAATTGTTGGATATAAGTCAACAATCTGTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2_importin

Protein Analysis

189

Amino Acids

21.29

Weight (kDa)

4.85

Isoelectric Point (pI)

56.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07170 AT5G07170 AT5G62240
fragaria_vesca	FvH4_7g28280 FvH4_7g28280 FvH4_7g28280 FvH4_7g28280
malus_domestica	MD01G1187200.v1.1 MD07G1259000.v1.1 MD07G1259100.v1.1 MD07G1259400.v1.1
prunus_persica	Prupe.2G283500_v2.0.a1
pyrus_communis	pycom01g19910 pycom07g23180 pycom07g23190
rosa_chinensis	RchiOBHm_Chr1g0375251 RchiOBHm_Chr3g0465611
rosa_laevigata	RLG00000026674
rosa_multiflora	Rmu_sc0000554.1_g000033
rosa_roxburghii	Rroxscaffold_4G00282900
rosa_rugosa	Rorug01G0389400 Rorug01G0389500
rosa_samantha	Rh1AG400200 Rh1BG364200 Rh1CG377400 Rh1DG394800
rosa_wichuraiana	Rw1G035530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	321
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	3 cut(s)	131, 234, 302
AcsI	RAATTY	1 cut(s)	68
AfeI	AGCGCT	1 cut(s)	373
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	5 cut(s)	182, 193, 254, 263, 420
AloI	GAACNNNNNNTCC	2 cut(s)	125, 157
AluBI	AGCT	3 cut(s)	273, 448, 514
AluI	AGCT	3 cut(s)	273, 448, 514
Alw26I	GTCTC	2 cut(s)	101, 313
Ama87I	CYCGRG	2 cut(s)	388, 515
Aor13HI	TCCGGA	1 cut(s)	214
Aor51HI	AGCGCT	1 cut(s)	373
AoxI	GGCC	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	68
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AspLEI	GCGC	2 cut(s)	79, 374
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	2 cut(s)	389, 390
AsuHPI	GGTGA	3 cut(s)	88, 390, 455
AvaI	CYCGRG	2 cut(s)	388, 515
AvaII	GGWCC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	453
BcnI	CCSGG	2 cut(s)	389, 390
BcoDI	GTCTC	2 cut(s)	101, 313
BfmI	CTRYAG	1 cut(s)	312
BfoI	RGCGCY	1 cut(s)	375
BglI	GCCNNNNNGGC	1 cut(s)	128
Bme1390I	CCNGG	2 cut(s)	389, 390
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	2 cut(s)	388, 515
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	2 cut(s)	143, 219
BmrFI	CCNGG	2 cut(s)	389, 390
BmsI	GCATC	1 cut(s)	64
BpuEI	CTTGAG	1 cut(s)	342
BpuMI	CCSGG	2 cut(s)	389, 390
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	4 cut(s)	123, 387, 388, 435
BsaWI	WCCGGW	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	115, 487
BseAI	TCCGGA	1 cut(s)	214
BseDI	CCNNGG	4 cut(s)	123, 387, 388, 435
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseNI	ACTGG	2 cut(s)	115, 487
BseRI	GAGGAG	1 cut(s)	140
BseYI	CCCAGC	1 cut(s)	99
BshFI	GGCC	1 cut(s)	122
BsiHKCI	CYCGRG	2 cut(s)	388, 515
BsiSI	CCGG	3 cut(s)	104, 215, 389
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	2 cut(s)	101, 313
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	1 cut(s)	122
Bso31I	GGTCTC	1 cut(s)	313
BsoBI	CYCGRG	2 cut(s)	388, 515
Bsp13I	TCCGGA	1 cut(s)	214
BspACI	CCGC	3 cut(s)	131, 234, 302
BspANI	GGCC	1 cut(s)	122
BspEI	TCCGGA	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	143, 219
BspTNI	GGTCTC	1 cut(s)	313
BsrI	ACTGG	2 cut(s)	115, 487
BssECI	CCNNGG	4 cut(s)	123, 387, 388, 435
BstDSI	CCRYGG	1 cut(s)	435
BstF5I	GGATG	1 cut(s)	211
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	2 cut(s)	79, 374
BstMAI	GTCTC	2 cut(s)	101, 313
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 454
BstSCI	CCNGG	2 cut(s)	387, 388
BstSFI	CTRYAG	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	435
BtsCI	GGATG	1 cut(s)	211
CfoI	GCGC	2 cut(s)	79, 374
Cfr13I	GGNCC	1 cut(s)	61
Cfr9I	CCCGGG	1 cut(s)	388
CviAII	CATG	4 cut(s)	58, 65, 295, 352
CviJI	RGCY	8 cut(s)	35, 103, 122, 166, 273, 356, 448, 514
CviKI_1	RGCY	8 cut(s)	35, 103, 122, 166, 273, 356, 448, 514
EciI	GGCGGA	2 cut(s)	146, 223
Eco31I	GGTCTC	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	61
Eco47III	AGCGCT	1 cut(s)	373
Eco88I	CYCGRG	2 cut(s)	388, 515
FaeI	CATG	4 cut(s)	61, 68, 298, 355
FaiI	YATR	6 cut(s)	59, 66, 90, 296, 353, 545
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	4 cut(s)	57, 64, 294, 351
FblI	GTMKAC	1 cut(s)	321
FokI	GGATG	1 cut(s)	198
GlaI	GCGC	2 cut(s)	78, 373
GsaI	CCCAGC	1 cut(s)	103
HaeII	RGCGCY	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	3 cut(s)	104, 215, 389
HhaI	GCGC	2 cut(s)	79, 374
Hin1II	CATG	4 cut(s)	61, 68, 298, 355
Hin6I	GCGC	2 cut(s)	77, 372
HinP1I	GCGC	2 cut(s)	77, 372
HincII	GTYRAC	1 cut(s)	551
HindII	GTYRAC	1 cut(s)	551
HinfI	GANTC	2 cut(s)	208, 281
HpaII	CCGG	3 cut(s)	104, 215, 389
HphI	GGTGA	3 cut(s)	88, 390, 455
Hpy166II	GTNNAC	3 cut(s)	322, 478, 551
Hpy188III	TCNNGA	4 cut(s)	116, 215, 359, 517
Hpy8I	GTNNAC	3 cut(s)	322, 478, 551
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 454
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	4 cut(s)	61, 68, 298, 355
HspAI	GCGC	2 cut(s)	77, 372
Kpn2I	TCCGGA	1 cut(s)	214
LpnPI	CCDG	9 cut(s)	96, 113, 117, 138, 158, 228, 234, 402, 500
LweI	GCATC	1 cut(s)	64
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	396
MboII	GAAGA	2 cut(s)	20, 266
MluCI	AATT	6 cut(s)	51, 68, 185, 193, 289, 533
MlyI	GAGTC	1 cut(s)	275
MmeI	TCCRAC	2 cut(s)	507, 519
MnlI	CCTC	9 cut(s)	25, 34, 112, 118, 121, 127, 178, 298, 414
MroI	TCCGGA	1 cut(s)	214
MseI	TTAA	1 cut(s)	565
MspA1I	CMGCKG	2 cut(s)	273, 448
MspI	CCGG	3 cut(s)	104, 215, 389
MspR9I	CCNGG	2 cut(s)	389, 390
MwoI	GCNNNNNNNGC	2 cut(s)	128, 454
NciI	CCSGG	2 cut(s)	389, 390
NlaIII	CATG	4 cut(s)	61, 68, 298, 355
NlaIV	GGNNCC	2 cut(s)	143, 219
NmeAIII	GCCGAG	1 cut(s)	148
NmuCI	GTSAC	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PspFI	CCCAGC	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	143, 219
PspPI	GGNCC	1 cut(s)	61
PvuII	CAGCTG	2 cut(s)	273, 448
SaqAI	TTAA	1 cut(s)	565
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	275
ScrFI	CCNGG	2 cut(s)	389, 390
SetI	ASST	7 cut(s)	223, 252, 275, 309, 406, 450, 516
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	1 cut(s)	61
SmaI	CCCGGG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
Sse9I	AATT	6 cut(s)	51, 68, 185, 193, 289, 533
SsiI	CCGC	3 cut(s)	131, 234, 302
SspI	AATATT	1 cut(s)	331
StyD4I	CCNGG	2 cut(s)	387, 388
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	39
TasI	AATT	6 cut(s)	51, 68, 185, 193, 289, 533
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	1 cut(s)	565
Tru9I	TTAA	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	396
Tsp45I	GTSAC	1 cut(s)	396
TspDTI	ATGAA	2 cut(s)	81, 200
TspGWI	ACGGA	1 cut(s)	511
TspMI	CCCGGG	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	1 cut(s)	68
XcmI	CCANNNNNNNNNTGG	1 cut(s)	107
XmaI	CCCGGG	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.